Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G27610 |
| fragaria_vesca | FvH4_3g24581 |
| prunus_persica | Prupe.6G127000_v2.0.a1 |
| pyrus_communis | pycom11g13360 |
| rosa_chinensis | RchiOBHm_Chr5g0044141 |
| rosa_laevigata | RLG00000034246 |
| rosa_multiflora | Rmu_sc0000939.1_g000031 Rmu_sc0014980.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00036910 |
| rosa_rugosa | Rorug05G0210800 |
| rosa_samantha | Rh5AG295700 Rh5BG303500 Rh5CG330500 Rh5DG312300 |
| rosa_wichuraiana | Rw5G027340 Rw5G027410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 954, 1080 |
| AarI | CACCTGC | 1 cut(s) | 183 |
| Acc36I | ACCTGC | 1 cut(s) | 183 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 565 |
| AccI | GTMKAC | 3 cut(s) | 367, 1795, 2477 |
| AccII | CGCG | 3 cut(s) | 107, 2087, 2129 |
| AclWI | GGATC | 2 cut(s) | 307, 1910 |
| AcsI | RAATTY | 3 cut(s) | 1470, 1511, 1801 |
| AcuI | CTGAAG | 5 cut(s) | 474, 965, 1016, 1299, 2093 |
| AfaI | GTAC | 3 cut(s) | 1145, 1275, 1849 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 21, 274, 565, 1319, 1483, 2599 |
| AflII | CTTAAG | 1 cut(s) | 329 |
| AjnI | CCWGG | 3 cut(s) | 558, 2227, 2470 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 989, 1021 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 660, 692 |
| Alw21I | GWGCWC | 2 cut(s) | 1932, 2038 |
| Alw26I | GTCTC | 5 cut(s) | 121, 192, 1701, 2508, 2616 |
| AlwI | GGATC | 2 cut(s) | 307, 1910 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2491 |
| AoxI | GGCC | 3 cut(s) | 1245, 1267, 1980 |
| ApeKI | GCWGC | 4 cut(s) | 644, 1544, 1556, 2408 |
| ApoI | RAATTY | 3 cut(s) | 1470, 1511, 1801 |
| AseI | ATTAAT | 2 cut(s) | 738, 1533 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1181 |
| AspLEI | GCGC | 1 cut(s) | 2107 |
| AspS9I | GGNCC | 5 cut(s) | 24, 423, 628, 1246, 1897 |
| AsuHPI | GGTGA | 7 cut(s) | 700, 1302, 1633, 2051, 2260, 2291, 2557 |
| AsuII | TTCGAA | 1 cut(s) | 2010 |
| AsuNHI | GCTAGC | 2 cut(s) | 892, 2437 |
| AvaII | GGWCC | 4 cut(s) | 24, 423, 628, 1897 |
| BaeGI | GKGCMC | 1 cut(s) | 1636 |
| BanII | GRGCYC | 2 cut(s) | 855, 2038 |
| BbsI | GAAGAC | 2 cut(s) | 312, 455 |
| Bbv12I | GWGCWC | 2 cut(s) | 1932, 2038 |
| BbvI | GCAGC | 4 cut(s) | 656, 1531, 1568, 2420 |
| BccI | CCATC | 6 cut(s) | 461, 484, 880, 1244, 2194, 2597 |
| BceAI | ACGGC | 2 cut(s) | 98, 2037 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 291, 325, 2000, 2034 |
| BciT130I | CCWGG | 3 cut(s) | 560, 2229, 2472 |
| BclI | TGATCA | 2 cut(s) | 352, 1134 |
| BcoDI | GTCTC | 5 cut(s) | 121, 192, 1701, 2508, 2616 |
| BfaI | CTAG | 3 cut(s) | 893, 1524, 2438 |
| BfmI | CTRYAG | 3 cut(s) | 504, 1263, 1554 |
| BfrI | CTTAAG | 1 cut(s) | 329 |
| BfuAI | ACCTGC | 1 cut(s) | 183 |
| BisI | GCNGC | 6 cut(s) | 645, 1545, 1557, 2088, 2127, 2409 |
| BlsI | GCNGC | 6 cut(s) | 646, 1546, 1558, 2089, 2128, 2410 |
| Bme1390I | CCNGG | 3 cut(s) | 560, 2229, 2472 |
| Bme18I | GGWCC | 4 cut(s) | 24, 423, 628, 1897 |
| BmgT120I | GGNCC | 5 cut(s) | 24, 423, 628, 1246, 1897 |
| BmiI | GGNNCC | 3 cut(s) | 26, 424, 1324 |
| BmrFI | CCNGG | 3 cut(s) | 560, 2229, 2472 |
| BmsI | GCATC | 5 cut(s) | 573, 796, 1086, 1327, 1341 |
| BmtI | GCTAGC | 2 cut(s) | 896, 2441 |
| BpiI | GAAGAC | 2 cut(s) | 312, 455 |
| BpmI | CTGGAG | 2 cut(s) | 1463, 2454 |
| Bpu14I | TTCGAA | 1 cut(s) | 2010 |
| Bsa29I | ATCGAT | 2 cut(s) | 1914, 2584 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2580 |
| BsaI | GGTCTC | 1 cut(s) | 192 |
| BsaJI | CCNNGG | 5 cut(s) | 631, 684, 1983, 2228, 2471 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 21, 274, 565, 1319, 1483, 2599 |
| Bse1I | ACTGG | 2 cut(s) | 1480, 2174 |
| Bse3DI | GCAATG | 3 cut(s) | 247, 1428, 2100 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2580 |
| BseBI | CCWGG | 3 cut(s) | 560, 2229, 2472 |
| BseCI | ATCGAT | 2 cut(s) | 1914, 2584 |
| BseDI | CCNNGG | 5 cut(s) | 631, 684, 1983, 2228, 2471 |
| BseGI | GGATG | 7 cut(s) | 415, 811, 1075, 1236, 2209, 2290, 2608 |
| BseJI | GATNNNNATC | 1 cut(s) | 2580 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 21, 274, 565, 1319, 1483, 2599 |
| BseMI | GCAATG | 3 cut(s) | 247, 1428, 2100 |
| BseMII | CTCAG | 1 cut(s) | 1446 |
| BseNI | ACTGG | 2 cut(s) | 1480, 2174 |
| BseSI | GKGCMC | 1 cut(s) | 1636 |
| BseXI | GCAGC | 4 cut(s) | 656, 1531, 1568, 2420 |
| BseYI | CCCAGC | 1 cut(s) | 2074 |
| BsgI | GTGCAG | 2 cut(s) | 423, 1530 |
| Bsh1236I | CGCG | 3 cut(s) | 107, 2087, 2129 |
| BshFI | GGCC | 3 cut(s) | 1247, 1269, 1982 |
| BshVI | ATCGAT | 2 cut(s) | 1914, 2584 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1932, 2038 |
| BsiSI | CCGG | 1 cut(s) | 2363 |
| BslFI | GGGAC | 2 cut(s) | 436, 509 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 21, 274, 565, 1319, 1483, 2599 |
| BsmAI | GTCTC | 5 cut(s) | 121, 192, 1701, 2508, 2616 |
| BsmBI | CGTCTC | 1 cut(s) | 121 |
| BsmFI | GGGAC | 2 cut(s) | 436, 509 |
| BsmI | GAATGC | 1 cut(s) | 2007 |
| BsnI | GGCC | 3 cut(s) | 1247, 1269, 1982 |
| Bso31I | GGTCTC | 1 cut(s) | 192 |
| Bsp119I | TTCGAA | 1 cut(s) | 2010 |
| Bsp1286I | GDGCHC | 4 cut(s) | 855, 1636, 1932, 2038 |
| Bsp143I | GATC | 8 cut(s) | 312, 352, 1015, 1134, 1731, 1836, 1915, 1948 |
| Bsp19I | CCATGG | 2 cut(s) | 684, 1983 |
| BspANI | GGCC | 3 cut(s) | 1247, 1269, 1982 |
| BspCNI | CTCAG | 1 cut(s) | 1447 |
| BspDI | ATCGAT | 2 cut(s) | 1914, 2584 |
| BspFNI | CGCG | 3 cut(s) | 107, 2087, 2129 |
| BspHI | TCATGA | 3 cut(s) | 1363, 1833, 2383 |
| BspLI | GGNNCC | 3 cut(s) | 26, 424, 1324 |
| BspMAI | CTGCAG | 1 cut(s) | 1558 |
| BspMI | ACCTGC | 1 cut(s) | 183 |
| BspOI | GCTAGC | 2 cut(s) | 896, 2441 |
| BspPI | GGATC | 2 cut(s) | 307, 1910 |
| BspT104I | TTCGAA | 1 cut(s) | 2010 |
| BspTI | CTTAAG | 1 cut(s) | 329 |
| BspTNI | GGTCTC | 1 cut(s) | 192 |
| BsrDI | GCAATG | 3 cut(s) | 247, 1428, 2100 |
| BsrI | ACTGG | 2 cut(s) | 1480, 2174 |
| BssECI | CCNNGG | 5 cut(s) | 631, 684, 1983, 2228, 2471 |
| BssMI | GATC | 8 cut(s) | 312, 352, 1015, 1134, 1731, 1836, 1915, 1948 |
| BssT1I | CCWWGG | 3 cut(s) | 631, 684, 1983 |
| Bst2UI | CCWGG | 3 cut(s) | 560, 2229, 2472 |
| Bst4CI | ACNGT | 9 cut(s) | 36, 505, 628, 931, 1578, 1817, 2429, 2519, 2527 |
| Bst6I | CTCTTC | 3 cut(s) | 992, 2319, 2388 |
| BstAFI | CTTAAG | 1 cut(s) | 329 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1553 |
| BstBI | TTCGAA | 1 cut(s) | 2010 |
| BstDEI | CTNAG | 6 cut(s) | 1455, 1601, 1625, 1711, 1861, 2501 |
| BstDSI | CCRYGG | 2 cut(s) | 684, 1983 |
| BstEII | GGTNACC | 2 cut(s) | 2279, 2354 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1317 |
| BstF5I | GGATG | 7 cut(s) | 415, 811, 1075, 1236, 2209, 2290, 2608 |
| BstFNI | CGCG | 3 cut(s) | 107, 2087, 2129 |
| BstHHI | GCGC | 1 cut(s) | 2107 |
| BstKTI | GATC | 8 cut(s) | 315, 355, 1018, 1137, 1734, 1839, 1918, 1951 |
| BstMAI | GTCTC | 5 cut(s) | 121, 192, 1701, 2508, 2616 |
| BstMBI | GATC | 8 cut(s) | 312, 352, 1015, 1134, 1731, 1836, 1915, 1948 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 246, 536, 610, 1418, 1544, 1553, 2033, 2104 |
| BstNI | CCWGG | 3 cut(s) | 560, 2229, 2472 |
| BstNSI | RCATGY | 3 cut(s) | 1172, 1280, 1590 |
| BstPI | GGTNACC | 2 cut(s) | 2279, 2354 |
| BstSCI | CCNGG | 3 cut(s) | 558, 2227, 2470 |
| BstSFI | CTRYAG | 3 cut(s) | 504, 1263, 1554 |
| BstSLI | GKGCMC | 1 cut(s) | 1636 |
| BstUI | CGCG | 3 cut(s) | 107, 2087, 2129 |
| BstV1I | GCAGC | 4 cut(s) | 656, 1531, 1568, 2420 |
| BstV2I | GAAGAC | 2 cut(s) | 312, 455 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1243 |
| Bsu15I | ATCGAT | 2 cut(s) | 1914, 2584 |
| BsuRI | GGCC | 3 cut(s) | 1247, 1269, 1982 |
| BsuTUI | ATCGAT | 2 cut(s) | 1914, 2584 |
| BtgI | CCRYGG | 2 cut(s) | 684, 1983 |
| BtsCI | GGATG | 7 cut(s) | 415, 811, 1075, 1236, 2209, 2290, 2608 |
| BtsI | GCAGTG | 2 cut(s) | 1066, 1179 |
| BtsIMutI | CAGTG | 5 cut(s) | 989, 1066, 1144, 1179, 2434 |
| BveI | ACCTGC | 1 cut(s) | 183 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2491 |
| CciI | TCATGA | 3 cut(s) | 1363, 1833, 2383 |
| CfoI | GCGC | 1 cut(s) | 2107 |
| Cfr13I | GGNCC | 5 cut(s) | 24, 423, 628, 1246, 1897 |
| ClaI | ATCGAT | 2 cut(s) | 1914, 2584 |
| CseI | GACGC | 2 cut(s) | 779, 1082 |
| Csp6I | GTAC | 3 cut(s) | 1144, 1274, 1848 |
| CviQI | GTAC | 3 cut(s) | 1144, 1274, 1848 |
| DdeI | CTNAG | 6 cut(s) | 1455, 1601, 1625, 1711, 1861, 2501 |
| DpnI | GATC | 8 cut(s) | 314, 354, 1017, 1136, 1733, 1838, 1917, 1950 |
| DpnII | GATC | 8 cut(s) | 312, 352, 1015, 1134, 1731, 1836, 1915, 1948 |
| Eam1104I | CTCTTC | 3 cut(s) | 992, 2319, 2388 |
| EarI | CTCTTC | 3 cut(s) | 992, 2319, 2388 |
| EciI | GGCGGA | 1 cut(s) | 1173 |
| Ecl136II | GAGCTC | 1 cut(s) | 2036 |
| Eco130I | CCWWGG | 3 cut(s) | 631, 684, 1983 |
| Eco24I | GRGCYC | 2 cut(s) | 855, 2038 |
| Eco31I | GGTCTC | 1 cut(s) | 192 |
| Eco32I | GATATC | 1 cut(s) | 1990 |
| Eco47I | GGWCC | 4 cut(s) | 24, 423, 628, 1897 |
| Eco53kI | GAGCTC | 1 cut(s) | 2036 |
| Eco57I | CTGAAG | 5 cut(s) | 474, 965, 1016, 1299, 2093 |
| Eco91I | GGTNACC | 2 cut(s) | 2279, 2354 |
| EcoICRI | GAGCTC | 1 cut(s) | 2036 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1317 |
| EcoO109I | RGGNCCY | 2 cut(s) | 24, 423 |
| EcoO65I | GGTNACC | 2 cut(s) | 2279, 2354 |
| EcoRII | CCWGG | 3 cut(s) | 558, 2227, 2470 |
| EcoRV | GATATC | 1 cut(s) | 1990 |
| EcoT14I | CCWWGG | 3 cut(s) | 631, 684, 1983 |
| EcoT22I | ATGCAT | 1 cut(s) | 1588 |
| EcoT38I | GRGCYC | 2 cut(s) | 855, 2038 |
| ErhI | CCWWGG | 3 cut(s) | 631, 684, 1983 |
| Esp3I | CGTCTC | 1 cut(s) | 121 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 686, 718 |
| FaqI | GGGAC | 2 cut(s) | 436, 509 |
| FauI | CCCGC | 6 cut(s) | 22, 332, 355, 618, 826, 1256 |
| FbaI | TGATCA | 2 cut(s) | 352, 1134 |
| FblI | GTMKAC | 3 cut(s) | 367, 1795, 2477 |
| Fnu4HI | GCNGC | 6 cut(s) | 645, 1545, 1557, 2088, 2127, 2409 |
| FokI | GGATG | 7 cut(s) | 422, 818, 1082, 1223, 2216, 2277, 2615 |
| FriOI | GRGCYC | 2 cut(s) | 855, 2038 |
| Fsp4HI | GCNGC | 6 cut(s) | 645, 1545, 1557, 2088, 2127, 2409 |
| FspBI | CTAG | 3 cut(s) | 893, 1524, 2438 |
| GlaI | GCGC | 1 cut(s) | 2106 |
| GluI | GCNGC | 6 cut(s) | 645, 1545, 1557, 2088, 2127, 2409 |
| GsaI | CCCAGC | 1 cut(s) | 2078 |
| GsuI | CTGGAG | 2 cut(s) | 1463, 2454 |
| HaeIII | GGCC | 3 cut(s) | 1247, 1269, 1982 |
| HapII | CCGG | 1 cut(s) | 2363 |
| HgaI | GACGC | 2 cut(s) | 779, 1082 |
| HhaI | GCGC | 1 cut(s) | 2107 |
| Hin6I | GCGC | 1 cut(s) | 2105 |
| HinP1I | GCGC | 1 cut(s) | 2105 |
| HindIII | AAGCTT | 1 cut(s) | 864 |
| HinfI | GANTC | 7 cut(s) | 4, 146, 707, 2120, 2488, 2576, 2586 |
| HpaII | CCGG | 1 cut(s) | 2363 |
| HphI | GGTGA | 7 cut(s) | 700, 1302, 1633, 2051, 2260, 2291, 2557 |
| Hpy166II | GTNNAC | 5 cut(s) | 296, 368, 909, 1796, 2478 |
| Hpy188I | TCNGA | 8 cut(s) | 130, 145, 352, 580, 885, 996, 2302, 2493 |
| Hpy188III | TCNNGA | 9 cut(s) | 150, 1364, 1431, 1690, 1772, 1834, 1973, 2384, 2485 |
| Hpy8I | GTNNAC | 5 cut(s) | 296, 368, 909, 1796, 2478 |
| HpyCH4III | ACNGT | 9 cut(s) | 36, 505, 628, 931, 1578, 1817, 2429, 2519, 2527 |
| HpyCH4IV | ACGT | 1 cut(s) | 716 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 246, 536, 610, 1418, 1544, 1553, 2033, 2104 |
| HpyF3I | CTNAG | 6 cut(s) | 1455, 1601, 1625, 1711, 1861, 2501 |
| HpySE526I | ACGT | 1 cut(s) | 716 |
| HspAI | GCGC | 1 cut(s) | 2105 |
| Ksp22I | TGATCA | 2 cut(s) | 352, 1134 |
| Kzo9I | GATC | 8 cut(s) | 312, 352, 1015, 1134, 1731, 1836, 1915, 1948 |
| LmnI | GCTCC | 2 cut(s) | 1460, 1927 |
| Lsp1109I | GCAGC | 4 cut(s) | 656, 1531, 1568, 2420 |
| LweI | GCATC | 5 cut(s) | 573, 796, 1086, 1327, 1341 |
| MaeI | CTAG | 3 cut(s) | 893, 1524, 2438 |
| MaeII | ACGT | 1 cut(s) | 716 |
| MaeIII | GTNAC | 9 cut(s) | 622, 811, 925, 1117, 1308, 1639, 2279, 2354, 2519 |
| MalI | GATC | 8 cut(s) | 314, 354, 1017, 1136, 1733, 1838, 1917, 1950 |
| MboI | GATC | 8 cut(s) | 312, 352, 1015, 1134, 1731, 1836, 1915, 1948 |
| MboII | GAAGA | 8 cut(s) | 312, 460, 1009, 1774, 1796, 2263, 2336, 2405 |
| MfeI | CAATTG | 1 cut(s) | 2442 |
| MhlI | GDGCHC | 4 cut(s) | 855, 1636, 1932, 2038 |
| MlyI | GAGTC | 2 cut(s) | 716, 2114 |
| MmeI | TCCRAC | 1 cut(s) | 1943 |
| Mph1103I | ATGCAT | 1 cut(s) | 1588 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1181 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1241, 1755 |
| MspA1I | CMGCKG | 1 cut(s) | 2162 |
| MspCI | CTTAAG | 1 cut(s) | 329 |
| MspI | CCGG | 1 cut(s) | 2363 |
| MspR9I | CCNGG | 3 cut(s) | 560, 2229, 2472 |
| MunI | CAATTG | 1 cut(s) | 2442 |
| Mva1269I | GAATGC | 1 cut(s) | 2007 |
| MvaI | CCWGG | 3 cut(s) | 560, 2229, 2472 |
| MvnI | CGCG | 3 cut(s) | 107, 2087, 2129 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 246, 536, 610, 1418, 1544, 1553, 2033, 2104 |
| NcoI | CCATGG | 2 cut(s) | 684, 1983 |
| NdeII | GATC | 8 cut(s) | 312, 352, 1015, 1134, 1731, 1836, 1915, 1948 |
| NheI | GCTAGC | 2 cut(s) | 892, 2437 |
| NlaIV | GGNNCC | 3 cut(s) | 26, 424, 1324 |
| NmeAIII | GCCGAG | 1 cut(s) | 1985 |
| NmuCI | GTSAC | 5 cut(s) | 622, 1308, 1639, 2279, 2519 |
| NsiI | ATGCAT | 1 cut(s) | 1588 |
| NspI | RCATGY | 3 cut(s) | 1172, 1280, 1590 |
| NspV | TTCGAA | 1 cut(s) | 2010 |
| PaeI | GCATGC | 1 cut(s) | 1590 |
| PagI | TCATGA | 3 cut(s) | 1363, 1833, 2383 |
| PaqCI | CACCTGC | 1 cut(s) | 183 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 111 |
| PctI | GAATGC | 1 cut(s) | 2007 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1181 |
| PfeI | GAWTC | 4 cut(s) | 146, 2488, 2576, 2586 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 565 |
| PkrI | GCNGC | 6 cut(s) | 646, 1546, 1558, 2089, 2128, 2410 |
| PleI | GAGTC | 2 cut(s) | 715, 2114 |
| PpsI | GAGTC | 2 cut(s) | 715, 2114 |
| PpuMI | RGGWCCY | 2 cut(s) | 24, 423 |
| PshBI | ATTAAT | 2 cut(s) | 738, 1533 |
| PsiI | TTATAA | 2 cut(s) | 954, 1080 |
| Psp124BI | GAGCTC | 1 cut(s) | 2038 |
| Psp5II | RGGWCCY | 2 cut(s) | 24, 423 |
| Psp6I | CCWGG | 3 cut(s) | 558, 2227, 2470 |
| PspEI | GGTNACC | 2 cut(s) | 2279, 2354 |
| PspFI | CCCAGC | 1 cut(s) | 2074 |
| PspGI | CCWGG | 3 cut(s) | 558, 2227, 2470 |
| PspN4I | GGNNCC | 3 cut(s) | 26, 424, 1324 |
| PspPI | GGNCC | 5 cut(s) | 24, 423, 628, 1246, 1897 |
| PspPPI | RGGWCCY | 2 cut(s) | 24, 423 |
| PstI | CTGCAG | 1 cut(s) | 1558 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2491 |
| PvuII | CAGCTG | 1 cut(s) | 2162 |
| RsaI | GTAC | 3 cut(s) | 1145, 1275, 1849 |
| RsaNI | GTAC | 3 cut(s) | 1144, 1274, 1848 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1241, 1755 |
| SacI | GAGCTC | 1 cut(s) | 2038 |
| SatI | GCNGC | 6 cut(s) | 645, 1545, 1557, 2088, 2127, 2409 |
| Sau3AI | GATC | 8 cut(s) | 312, 352, 1015, 1134, 1731, 1836, 1915, 1948 |
| Sau96I | GGNCC | 5 cut(s) | 24, 423, 628, 1246, 1897 |
| SchI | GAGTC | 2 cut(s) | 716, 2114 |
| ScrFI | CCNGG | 3 cut(s) | 560, 2229, 2472 |
| SduI | GDGCHC | 4 cut(s) | 855, 1636, 1932, 2038 |
| SfaNI | GCATC | 5 cut(s) | 573, 796, 1086, 1327, 1341 |
| SfcI | CTRYAG | 3 cut(s) | 504, 1263, 1554 |
| SfuI | TTCGAA | 1 cut(s) | 2010 |
| SinI | GGWCC | 4 cut(s) | 24, 423, 628, 1897 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1241, 1755 |
| SmlI | CTYRAG | 1 cut(s) | 329 |
| SmoI | CTYRAG | 1 cut(s) | 329 |
| SphI | GCATGC | 1 cut(s) | 1590 |
| SspI | AATATT | 4 cut(s) | 1024, 1086, 1666, 1891 |
| SspMI | CTAG | 3 cut(s) | 893, 1524, 2438 |
| SstI | GAGCTC | 1 cut(s) | 2038 |
| StyD4I | CCNGG | 3 cut(s) | 558, 2227, 2470 |
| StyI | CCWWGG | 3 cut(s) | 631, 684, 1983 |
| TaaI | ACNGT | 9 cut(s) | 36, 505, 628, 931, 1578, 1817, 2429, 2519, 2527 |
| TaiI | ACGT | 1 cut(s) | 719 |
| TaqI | TCGA | 7 cut(s) | 180, 228, 311, 855, 1914, 2010, 2584 |
| TatI | WGTACW | 2 cut(s) | 1273, 1847 |
| TauI | GCSGC | 2 cut(s) | 2090, 2129 |
| TfiI | GAWTC | 4 cut(s) | 146, 2488, 2576, 2586 |
| TscAI | CASTG | 5 cut(s) | 989, 1066, 1144, 1179, 2434 |
| TseFI | GTSAC | 5 cut(s) | 622, 1308, 1639, 2279, 2519 |
| TseI | GCWGC | 4 cut(s) | 644, 1544, 1556, 2408 |
| Tsp45I | GTSAC | 5 cut(s) | 622, 1308, 1639, 2279, 2519 |
| TspGWI | ACGGA | 1 cut(s) | 1940 |
| TspRI | CASTG | 5 cut(s) | 989, 1066, 1144, 1179, 2434 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 565 |
| Vha464I | CTTAAG | 1 cut(s) | 329 |
| VpaK11BI | GGWCC | 4 cut(s) | 24, 423, 628, 1897 |
| VspI | ATTAAT | 2 cut(s) | 738, 1533 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1317 |
| XapI | RAATTY | 3 cut(s) | 1470, 1511, 1801 |
| XceI | RCATGY | 3 cut(s) | 1172, 1280, 1590 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2600 |
| XmiI | GTMKAC | 3 cut(s) | 367, 1795, 2477 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1181 |
| XspI | CTAG | 3 cut(s) | 893, 1524, 2438 |
| Zsp2I | ATGCAT | 1 cut(s) | 1588 |