Rorug05G0210800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015364
Physical Location & Seq
Forward (+)
21628735 .. 21629430
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0210800.1

Sequence Viewer

Length: 696 bp
ATGGAACCACAAACCCAGCGACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAATAGGCTTTGTAGGCAGAGCAGTGCCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTACTACAAAAAGGAAGTTAGGTCCCCAACTGCAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAACGGTACGGAAAGATCGAGAGCAAGAATGCCTATTATTGGTTCGGGAACCACAGGGCTCGGGAGAAACAGAAGAAGAGGTTCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGACTTGTTGGTAATGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTCATGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGATTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCACATGCACGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGCTACAGCTACTACTCCGGTGGATGGGGCGGCTACGACGGTGGCTCTCACATTTCCCTTGAGCTCATCCTCAACTCCTACGGCTCGACCCTATTTTCCCGCGAAGGTGTTTTCTCTGCGAGAGAAGAGACAAAGCTGTAA

Protein Analysis

231

Amino Acids

25.68

Weight (kDa)

8.94

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 1.8e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27610
fragaria_vesca FvH4_3g24581
prunus_persica Prupe.6G127000_v2.0.a1
pyrus_communis pycom11g13360
rosa_chinensis RchiOBHm_Chr5g0044141
rosa_laevigata RLG00000034246
rosa_multiflora Rmu_sc0000939.1_g000031 Rmu_sc0014980.1_g000002
rosa_roxburghii Rroxscaffold_1G00036910
rosa_rugosa Rorug05G0210800
rosa_samantha Rh5AG295700 Rh5BG303500 Rh5CG330500 Rh5DG312300
rosa_wichuraiana Rw5G027340 Rw5G027410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 341
AccII CGCG 1 cut(s) 657
AciI CCGC 3 cut(s) 555, 585, 655
AclWI GGATC 4 cut(s) 194, 369, 388, 469
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 2 cut(s) 209, 343
AfiI CCNNNNNNNGG 2 cut(s) 240, 579
AgsI TTSAA 1 cut(s) 482
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 6 cut(s) 136, 199, 410, 564, 619, 691
AluI AGCT 6 cut(s) 136, 199, 410, 564, 619, 691
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 2 cut(s) 197, 677
AlwI GGATC 4 cut(s) 194, 369, 388, 469
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 2 cut(s) 281, 486
Asp718I GGTACC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 464, 521
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 2 cut(s) 262, 621
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 433, 573
BceAI ACGGC 1 cut(s) 652
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 197, 677
BfmI CTRYAG 3 cut(s) 108, 168, 559
BisI GCNGC 3 cut(s) 51, 556, 586
BlsI GCNGC 3 cut(s) 52, 557, 587
Bme1390I CCNGG 2 cut(s) 55, 94
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 4 cut(s) 6, 161, 251, 343
BmrFI CCNGG 2 cut(s) 55, 94
BmsI GCATC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 113, 635
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 27, 543
BsaWI WCCGGW 1 cut(s) 572
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 579
Bse21I CCTNAGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 27, 543
BseGI GGATG 4 cut(s) 37, 298, 584, 621
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 240, 579
BseMII CTCAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 657
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 573
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 240, 579
BsmAI GTCTC 2 cut(s) 197, 677
BsmFI GGGAC 1 cut(s) 145
BsmI GAATGC 1 cut(s) 235
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 262, 306, 621
Bsp143I GATC 7 cut(s) 112, 186, 216, 314, 361, 380, 461
BspACI CCGC 3 cut(s) 555, 585, 655
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 657
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 4 cut(s) 6, 161, 251, 343
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 4 cut(s) 194, 369, 388, 469
BspT107I GGYRCC 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 27, 543
BssMI GATC 7 cut(s) 112, 186, 216, 314, 361, 380, 461
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 3 cut(s) 207, 509, 596
Bst6I CTCTTC 2 cut(s) 272, 675
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 4 cut(s) 37, 298, 584, 621
BstFNI CGCG 1 cut(s) 657
BstKTI GATC 7 cut(s) 115, 189, 219, 317, 364, 383, 464
BstMAI GTCTC 2 cut(s) 197, 677
BstMBI GATC 7 cut(s) 112, 186, 216, 314, 361, 380, 461
BstMWI GCNNNNNNNGC 3 cut(s) 79, 407, 561
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 2 cut(s) 53, 92
BstSFI CTRYAG 3 cut(s) 108, 168, 559
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 3 cut(s) 186, 380, 461
BstYI RGATCY 3 cut(s) 186, 380, 461
Bsu36I CCTNAGG 1 cut(s) 357
BtsCI GGATG 4 cut(s) 37, 298, 584, 621
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 94
CciI TCATGA 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 159
Csp6I GTAC 2 cut(s) 208, 342
CviAII CATG 6 cut(s) 299, 307, 418, 472, 502, 529
CviQI GTAC 2 cut(s) 208, 342
DdeI CTNAG 1 cut(s) 357
DpnI GATC 7 cut(s) 114, 188, 218, 316, 363, 382, 463
DpnII GATC 7 cut(s) 112, 186, 216, 314, 361, 380, 461
Eam1104I CTCTTC 2 cut(s) 272, 675
EarI CTCTTC 2 cut(s) 272, 675
Ecl136II GAGCTC 1 cut(s) 619
Eco24I GRGCYC 2 cut(s) 262, 621
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 390
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 619
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 92
EcoT38I GRGCYC 2 cut(s) 262, 621
FaeI CATG 6 cut(s) 302, 310, 421, 475, 505, 532
FaqI GGGAC 1 cut(s) 145
FatI CATG 6 cut(s) 298, 306, 417, 471, 501, 528
FauI CCCGC 1 cut(s) 662
Fnu4HI GCNGC 3 cut(s) 51, 556, 586
FokI GGATG 4 cut(s) 44, 305, 591, 608
FriOI GRGCYC 2 cut(s) 262, 621
Fsp4HI GCNGC 3 cut(s) 51, 556, 586
GluI GCNGC 3 cut(s) 51, 556, 586
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 2 cut(s) 54, 573
Hin1II CATG 6 cut(s) 302, 310, 421, 475, 505, 532
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 2 cut(s) 54, 573
HphI GGTGA 2 cut(s) 464, 521
Hpy166II GTNNAC 2 cut(s) 99, 285
Hpy188I TCNGA 5 cut(s) 117, 183, 292, 380, 544
Hpy188III TCNNGA 5 cut(s) 220, 247, 263, 318, 418
Hpy8I GTNNAC 2 cut(s) 99, 285
Hpy99I CGWCG 1 cut(s) 596
HpyAV CCTTC 2 cut(s) 497, 653
HpyCH4III ACNGT 3 cut(s) 207, 509, 596
HpyCH4V TGCA 4 cut(s) 170, 310, 389, 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 407, 561
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 6 cut(s) 302, 310, 421, 475, 505, 532
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 7 cut(s) 112, 186, 216, 314, 361, 380, 461
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 398
MalI GATC 7 cut(s) 114, 188, 218, 316, 363, 382, 463
MboI GATC 7 cut(s) 112, 186, 216, 314, 361, 380, 461
MboII GAAGA 6 cut(s) 286, 289, 375, 396, 544, 692
MfeI CAATTG 1 cut(s) 346
MflI RGATCY 3 cut(s) 186, 380, 461
MhlI GDGCHC 3 cut(s) 262, 306, 621
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 94
MroXI GAANNNNTTC 2 cut(s) 281, 486
MseI TTAA 2 cut(s) 372, 429
MspA1I CMGCKG 2 cut(s) 199, 410
MspI CCGG 2 cut(s) 54, 573
MspR9I CCNGG 2 cut(s) 55, 94
MunI CAATTG 1 cut(s) 346
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 657
MwoI GCNNNNNNNGC 3 cut(s) 79, 407, 561
NciI CCSGG 1 cut(s) 55
NdeII GATC 7 cut(s) 112, 186, 216, 314, 361, 380, 461
NlaIII CATG 6 cut(s) 302, 310, 421, 475, 505, 532
NlaIV GGNNCC 4 cut(s) 6, 161, 251, 343
NspI RCATGY 1 cut(s) 505
PagI TCATGA 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 2 cut(s) 281, 486
PfeI GAWTC 2 cut(s) 123, 178
PkrI GCNGC 3 cut(s) 52, 557, 587
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 621
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 4 cut(s) 6, 161, 251, 343
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 3 cut(s) 186, 380, 461
PvuII CAGCTG 2 cut(s) 199, 410
RsaI GTAC 2 cut(s) 209, 343
RsaNI GTAC 2 cut(s) 208, 342
SacI GAGCTC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 372, 429
SatI GCNGC 3 cut(s) 51, 556, 586
Sau3AI GATC 7 cut(s) 112, 186, 216, 314, 361, 380, 461
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 55, 94
SduI GDGCHC 3 cut(s) 262, 306, 621
SfaNI GCATC 1 cut(s) 398
SfcI CTRYAG 3 cut(s) 108, 168, 559
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 128, 614
SmoI CTYRAG 2 cut(s) 128, 614
Sse9I AATT 1 cut(s) 346
SsiI CCGC 3 cut(s) 555, 585, 655
SstI GAGCTC 1 cut(s) 621
StyD4I CCNGG 2 cut(s) 53, 92
TaaI ACNGT 3 cut(s) 207, 509, 596
TaqI TCGA 2 cut(s) 219, 641
TasI AATT 1 cut(s) 346
TauI GCSGC 2 cut(s) 558, 588
TfiI GAWTC 2 cut(s) 123, 178
Tru1I TTAA 2 cut(s) 372, 429
Tru9I TTAA 2 cut(s) 372, 429
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 287, 482, 545
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 1 cut(s) 505
XmnI GAANNNNTTC 2 cut(s) 281, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.