Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015364

Physical Location & Seq

Genomic Coordinates Forward (+)

41185794 .. 41190743

Gene Structure 4950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG295700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2607 bp

ATGAGCGCAAAGCCCGGTTTGAGGAGCCTTGCAATCTCTTACACAAAGCGAGCTCTCACTCAAACCCACCTTTCCTCTCATACCAAACGTTTCTCTCACCTCTTTCCCTTCTCTTCCAAACCCAGCAACACTATAAATGCACACCACCTGTTCGATAAAACTCCCCACAGAGACCCCTTAGAATACACCCACTTACTCTTCGAGTACACTCGCAATGACCGCAACCATGAAGCCATCAACCTCTTTCTGGGTGCTTCCCGGGCCGGTCTACCGGTCAATGGGTCGGTTCTGTCTTCTGTGGTCAAGGCTTGTGGAACCTTGTGTGATCAAGCTGTGGGTAGACAAGTGCATTGTCAGTGTGTCAAGTCCGGGCTTGGGGAAGATGTTAGTGTTGGGACCTCTCTTGTCGATATGTATATGAAAACCGAGGGTGTTGTGGAGGGGAGGAGAGTCTTTGATGAGATGAGGGAGACGAATGTAGTGTCATGGACTTCATTGATTTCGGGTTACGCAAGAAACGGCTTGAATGACCAGGCGTTGGAGTTGTTTTCGCAGATGCAAATGGAAGGAAATAAGCCGAACCCGTTTACGTATGTGGCTGTGCTTGGAGTTTTGGCAGATGACGGGTTGGTTGAGAAGGGAAAGCAGGTTCATGCCATGGTTGTAAAGAACGGTTATGTAGCGATTACATTCTTGTGCAATTCGTTGATTAACATGTATTTAAAGTCAGGGATGGTTAGTGAGGCTAGAGCTGTTTTTGATAGTATGGCAAGTAGAGATGAGGTTACATGGAATAGCTTGGTTGCAGGTTATGTTACGAATGGGCTTGAGTTGGAAGCTTTTGAAATGTTTAATCAGATGGGGCTTGCGGGTATTAAGTTCACGCAACCGATATTTGTTACTGTTATCAAGTTATGTGCTAACTATGAAGAATTGGGTTTTGCAAGACAGCTACATTGCCGTGTTTTGAAGAGTGGGTTGGCATCCCATCGCAATATTGAAACAGCAATCCTGGTGGCTTACAGTAAGTGCAGTGAAATGGACGATGCTTTTAATATGTTCTCCATGATGCAAGGTGTTCAAAGTGTAGTAACTTGGACGGCCATGATCAGTGGGTACCTGCAGAATGGTGGAACAGAGAAAGGAGTGAAGTTGTTCTGTAAAATGAGCAGAGAAGGTGTTAGACCAAATGATTTCACTTATTCTGCCATCATTATGGCCCACCCTTCTATATCTATATTCCAAGTACATGCACAGGTTATAAAAACTAATTATGAGAAGTCACCTTCTGTAGGAACTTCACTCATAGACGCTTATGTTAAGACGGGAAATGTTCCTGAAGCTGAAAAAGTTTTCCAAACGATTGACGAGAAGGACATTGTAGCATGGTCAGCAATGCTTGCTGGATATGCTCAAATAGAAGACACCGTGCGAGCTATTAAAATTTTCCTCCAGTTGACAAGAAAAGGGGTCAAACCTAACGAGTTTACGTTGTCTAGTATCATTAATGCTTGCGCTGGACCTTCAGCAACAGTGGAGCAGGGGAAGCAATTTCATGCTTGCTCAATTAAACTCAGGTTGAACAATACTTTGTGTCTAAGTAGTGCTCTTGTCACCATGTATGCAAAGATGGGGAATATTGAAAGTGCAAATGAAGTTTTCAAGAGACAAGGTGAGAGAGACTTAGTTTCGTGGAACTCTATGATCTCTGGATATGCACAACATGGTCAGGGGAATAAGGTTCTTGAAGTATTTGAGGAGATGCGTAGACAAAATTTGGAAATTGATGGGATAACATTCATTCTCATCATCTCTGCCTGTACTCATGCAGGCTTAGTAGATGAAGGTAAAAGATTTTTCAATATTATGGTCCAAGATTACAATATTGATCCTACAATGGAGCACTATTCTTGTATGGTTGATCTGTACAGCCGAGCCGGAAAGCTTGAAAAAGCGATGAATCTTATAAACAGCATGCCCTTCACTGCAGATGCAAATGTGTGGCGAGCTCTCTTGGGTGCTTGCCGTGTTCACCGTAACTTAGAGCTGGGAAAACTCGCAGCAGAAAAGCTCATTTCACTTCAGCCCCAAGACTCCGCTGCTTATGTTCTGTTGTCAAATATTTATGCTGCAGCTGGAAACTGGCAAGAGAGAGACAAAGTGAGGAAGTTGATGGATGAAAGAAAAGTGAAAAAGCAACCTGGGTATAGCTGGATTGAGGTGAAGAACAAGACCTATACATTCTTGGCCGGTGATGTTTCACATCCCATGTCAGACCGTATATACTCAAAACTTGATGAGTTGAATAACCGATTGAAGGATATGGGTTATCAGCCTGATACAAACTATGTGCTCCATGATGTTGAAGAGGAACACAAAGCAACCTTTCTTTATCAACACAGTGAGAGGTTGGCCATTGCTTTTGGATTGATTGCCAAACCTCCCGGATCTCCTATCCAGATTTTGAAAAATCTTAGGGTATGTGGAGACTGTCACACTGTTATTAAATTAATTTCGGTGATAGAAGCGAGGGATATAGTTGTCAGAGATTCAAATCGATACCACCACTTCAAGGGTGGTTTATGCTCTTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

868

Amino Acids

96.91

Weight (kDa)

8.12

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	157 - 205	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	159 - 206	4.7e-12	PPR repeat family
PPR_1	PF12854	159 - 187	2.5e-07	PPR repeat
PPR	PF01535	161 - 190	3.7e-08	PPR repeat
PPR_2	PF13041	362 - 405	1.9e-13	PPR repeat family
PPR	PF01535	364 - 394	2.1e-07	PPR repeat
PPR_2	PF13041	458 - 506	1.3e-09	PPR repeat family
PPR_2	PF13041	561 - 608	2.2e-11	PPR repeat family
PPR	PF01535	563 - 592	1.9e-09	PPR repeat
E_motif	PF20431	678 - 740	2.7e-20	E motif
Eplus_motif	PF20430	745 - 772	6.4e-09	E+ motif
DYW_deaminase	PF14432	776 - 868	2e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27610
fragaria_vesca	FvH4_3g24581
prunus_persica	Prupe.6G127000_v2.0.a1
pyrus_communis	pycom11g13360
rosa_chinensis	RchiOBHm_Chr5g0044141
rosa_laevigata	RLG00000034246
rosa_multiflora	Rmu_sc0000939.1_g000031 Rmu_sc0014980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036910
rosa_rugosa	Rorug05G0210800
rosa_samantha	Rh5AG295700 Rh5BG303500 Rh5CG330500 Rh5DG312300
rosa_wichuraiana	Rw5G027340 Rw5G027410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1262, 1967
Acc36I	ACCTGC	3 cut(s)	637, 797, 1128
Acc65I	GGTACC	1 cut(s)	1116
AccB1I	GGYRCC	1 cut(s)	1116
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccI	GTMKAC	3 cut(s)	268, 340, 1768
AciI	CCGC	3 cut(s)	220, 869, 2097
AclI	AACGTT	1 cut(s)	88
AclWI	GGATC	2 cut(s)	1883, 2455
AcoI	YGGCCR	3 cut(s)	1101, 2247, 2412
AcsI	RAATTY	2 cut(s)	1443, 1774
AcuI	CTGAAG	3 cut(s)	1359, 1509, 2066
AfaI	GTAC	5 cut(s)	206, 1118, 1248, 1822, 1928
AfiI	CCNNNNNNNGG	8 cut(s)	21, 247, 278, 375, 538, 1292, 2317, 2572
AflIII	ACRYGT	1 cut(s)	714
AgeI	ACCGGT	1 cut(s)	271
AjnI	CCWGG	3 cut(s)	531, 1011, 2200
AjuI	GAANNNNNNNTTGG	2 cut(s)	962, 994
AloI	GAACNNNNNNTCC	2 cut(s)	633, 665
Alw21I	GWGCWC	5 cut(s)	55, 1609, 1905, 2011, 2355
Alw26I	GTCTC	6 cut(s)	165, 464, 1660, 1674, 2148, 2481
AlwI	GGATC	2 cut(s)	1883, 2455
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	5 cut(s)	261, 1101, 1218, 2247, 2412
ApeKI	GCWGC	4 cut(s)	2060, 2099, 2129, 2132
ApoI	RAATTY	2 cut(s)	1443, 1774
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AseI	ATTAAT	2 cut(s)	1506, 2510
AsiGI	ACCGGT	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	1154
Asp718I	GGTACC	1 cut(s)	1116
AspLEI	GCGC	2 cut(s)	8, 1517
AspS9I	GGNCC	5 cut(s)	261, 396, 1219, 1520, 1870
AsuC2I	CCSGG	5 cut(s)	15, 259, 260, 370, 2445
AsuHPI	GGTGA	8 cut(s)	89, 1275, 1606, 1685, 2024, 2233, 2264, 2530
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	3 cut(s)	396, 1520, 1870
BalI	TGGCCA	1 cut(s)	2414
BanI	GGYRCC	1 cut(s)	1116
BanII	GRGCYC	2 cut(s)	55, 2011
BbsI	GAAGAC	2 cut(s)	285, 1428
Bbv12I	GWGCWC	5 cut(s)	55, 1609, 1905, 2011, 2355
BbvI	GCAGC	4 cut(s)	2072, 2086, 2116, 2144
BccI	CCATC	8 cut(s)	242, 727, 853, 996, 1217, 1624, 1781, 2167
BceAI	ACGGC	4 cut(s)	535, 945, 1116, 2010
BciT130I	CCWGG	3 cut(s)	533, 1013, 2202
BclI	TGATCA	2 cut(s)	325, 1107
BcnI	CCSGG	5 cut(s)	15, 259, 260, 370, 2445
BcoDI	GTCTC	6 cut(s)	165, 464, 1660, 1674, 2148, 2481
BfaI	CTAG	2 cut(s)	747, 1497
BfmI	CTRYAG	4 cut(s)	1121, 1290, 1986, 2130
BfuAI	ACCTGC	3 cut(s)	637, 797, 1128
BisI	GCNGC	4 cut(s)	2061, 2100, 2130, 2133
BlsI	GCNGC	4 cut(s)	2062, 2101, 2131, 2134
Bme1390I	CCNGG	8 cut(s)	15, 259, 260, 370, 533, 1013, 2202, 2445
Bme18I	GGWCC	3 cut(s)	396, 1520, 1870
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	5 cut(s)	261, 396, 1219, 1520, 1870
BmiI	GGNNCC	4 cut(s)	26, 316, 397, 1118
BmrFI	CCNGG	8 cut(s)	15, 259, 260, 370, 533, 1013, 2202, 2445
BmsI	GCATC	6 cut(s)	546, 992, 1036, 1059, 1752, 1981
BpiI	GAAGAC	2 cut(s)	285, 1428
BpmI	CTGGAG	1 cut(s)	1436
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	5 cut(s)	15, 259, 260, 370, 2445
Bsa29I	ATCGAT	1 cut(s)	2557
BsaAI	YACGTR	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	2553
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	258, 426, 657, 2201
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	8 cut(s)	21, 247, 278, 375, 538, 1292, 2317, 2572
Bse118I	RCCGGY	3 cut(s)	263, 271, 2249
Bse1I	ACTGG	2 cut(s)	1453, 2147
Bse3DI	GCAATG	4 cut(s)	220, 955, 1401, 2415
Bse8I	GATNNNNATC	1 cut(s)	2553
BseBI	CCWGG	3 cut(s)	533, 1013, 2202
BseCI	ATCGAT	1 cut(s)	2557
BseDI	CCNNGG	4 cut(s)	258, 426, 657, 2201
BseGI	GGATG	4 cut(s)	738, 983, 2182, 2263
BseJI	GATNNNNATC	1 cut(s)	2553
BseLI	CCNNNNNNNGG	8 cut(s)	21, 247, 278, 375, 538, 1292, 2317, 2572
BseMI	GCAATG	4 cut(s)	220, 955, 1401, 2415
BseMII	CTCAG	1 cut(s)	1588
BseNI	ACTGG	2 cut(s)	1453, 2147
BseRI	GAGGAG	3 cut(s)	37, 460, 1772
BseXI	GCAGC	4 cut(s)	2072, 2086, 2116, 2144
BseYI	CCCAGC	2 cut(s)	122, 2047
BsgI	GTGCAG	1 cut(s)	1051
BshFI	GGCC	5 cut(s)	263, 1103, 1220, 2249, 2414
BshNI	GGYRCC	1 cut(s)	1116
BshTI	ACCGGT	1 cut(s)	271
BshVI	ATCGAT	1 cut(s)	2557
BsiHKAI	GWGCWC	5 cut(s)	55, 1609, 1905, 2011, 2355
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	8 cut(s)	15, 259, 264, 272, 369, 1938, 2250, 2445
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	8 cut(s)	21, 247, 278, 375, 538, 1292, 2317, 2572
BsmAI	GTCTC	6 cut(s)	165, 464, 1660, 1674, 2148, 2481
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	5 cut(s)	263, 1103, 1220, 2249, 2414
Bso31I	GGTCTC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	5 cut(s)	55, 1609, 1905, 2011, 2355
Bsp1407I	TGTACA	1 cut(s)	1926
Bsp143I	GATC	6 cut(s)	325, 1107, 1704, 1888, 1921, 2447
Bsp19I	CCATGG	1 cut(s)	657
BspACI	CCGC	3 cut(s)	220, 869, 2097
BspANI	GGCC	5 cut(s)	263, 1103, 1220, 2249, 2414
BspCNI	CTCAG	1 cut(s)	1587
BspDI	ATCGAT	1 cut(s)	2557
BspLI	GGNNCC	4 cut(s)	26, 316, 397, 1118
BspMAI	CTGCAG	3 cut(s)	1125, 1990, 2134
BspMI	ACCTGC	3 cut(s)	637, 797, 1128
BspPI	GGATC	2 cut(s)	1883, 2455
BspT107I	GGYRCC	1 cut(s)	1116
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	4 cut(s)	220, 955, 1401, 2415
BsrFI	RCCGGY	3 cut(s)	263, 271, 2249
BsrGI	TGTACA	1 cut(s)	1926
BsrI	ACTGG	2 cut(s)	1453, 2147
BssAI	RCCGGY	3 cut(s)	263, 271, 2249
BssECI	CCNNGG	4 cut(s)	258, 426, 657, 2201
BssMI	GATC	6 cut(s)	325, 1107, 1704, 1888, 1921, 2447
BssT1I	CCWWGG	1 cut(s)	657
Bst2UI	CCWGG	3 cut(s)	533, 1013, 2202
Bst6I	CTCTTC	4 cut(s)	118, 203, 965, 2361
BstAPI	GCANNNNNTGC	1 cut(s)	1400
BstAUI	TGTACA	1 cut(s)	1926
BstBAI	YACGTR	1 cut(s)	591
BstDEI	CTNAG	7 cut(s)	178, 1574, 1598, 1684, 1834, 2041, 2474
BstDSI	CCRYGG	1 cut(s)	657
BstENI	CCTNNNNNAGG	1 cut(s)	1290
BstF5I	GGATG	4 cut(s)	738, 983, 2182, 2263
BstHHI	GCGC	2 cut(s)	8, 1517
BstKTI	GATC	6 cut(s)	328, 1110, 1707, 1891, 1924, 2450
BstMAI	GTCTC	6 cut(s)	165, 464, 1660, 1674, 2148, 2481
BstMBI	GATC	6 cut(s)	325, 1107, 1704, 1888, 1921, 2447
BstMWI	GCNNNNNNNGC	6 cut(s)	219, 260, 1391, 1400, 1409, 1546
BstNI	CCWGG	3 cut(s)	533, 1013, 2202
BstNSI	RCATGY	3 cut(s)	718, 1253, 1978
BstSCI	CCNGG	8 cut(s)	13, 257, 258, 368, 531, 1011, 2200, 2443
BstSFI	CTRYAG	4 cut(s)	1121, 1290, 1986, 2130
BstSNI	TACGTA	1 cut(s)	591
BstV1I	GCAGC	4 cut(s)	2072, 2086, 2116, 2144
BstV2I	GAAGAC	2 cut(s)	285, 1428
BstX2I	RGATCY	1 cut(s)	2447
BstXI	CCANNNNNNTGG	1 cut(s)	1216
BstYI	RGATCY	1 cut(s)	2447
Bsu15I	ATCGAT	1 cut(s)	2557
BsuRI	GGCC	5 cut(s)	263, 1103, 1220, 2249, 2414
BsuTUI	ATCGAT	1 cut(s)	2557
BtgI	CCRYGG	1 cut(s)	657
BtgZI	GCGATG	2 cut(s)	974, 1970
BtsCI	GGATG	4 cut(s)	738, 983, 2182, 2263
BtsI	GCAGTG	2 cut(s)	1039, 1983
BtsIMutI	CAGTG	7 cut(s)	362, 1039, 1117, 1539, 1983, 2407, 2496
BveI	ACCTGC	3 cut(s)	637, 797, 1128
CfoI	GCGC	2 cut(s)	8, 1517
Cfr10I	RCCGGY	3 cut(s)	263, 271, 2249
Cfr13I	GGNCC	5 cut(s)	261, 396, 1219, 1520, 1870
Cfr9I	CCCGGG	1 cut(s)	258
ClaI	ATCGAT	1 cut(s)	2557
CseI	GACGC	1 cut(s)	1319
Csp6I	GTAC	5 cut(s)	205, 1117, 1247, 1821, 1927
CspAI	ACCGGT	1 cut(s)	271
CspCI	CAANNNNNGTGG	4 cut(s)	292, 327, 996, 1031
CviQI	GTAC	5 cut(s)	205, 1117, 1247, 1821, 1927
DdeI	CTNAG	7 cut(s)	178, 1574, 1598, 1684, 1834, 2041, 2474
DpnI	GATC	6 cut(s)	327, 1109, 1706, 1890, 1923, 2449
DpnII	GATC	6 cut(s)	325, 1107, 1704, 1888, 1921, 2447
DraI	TTTAAA	1 cut(s)	723
EaeI	YGGCCR	3 cut(s)	1101, 2247, 2412
Eam1104I	CTCTTC	4 cut(s)	118, 203, 965, 2361
EarI	CTCTTC	4 cut(s)	118, 203, 965, 2361
Ecl136II	GAGCTC	2 cut(s)	53, 2009
Eco105I	TACGTA	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	657
Eco24I	GRGCYC	2 cut(s)	55, 2011
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	396, 1520, 1870
Eco53kI	GAGCTC	2 cut(s)	53, 2009
Eco57I	CTGAAG	3 cut(s)	1359, 1509, 2066
Eco88I	CYCGRG	1 cut(s)	258
EcoICRI	GAGCTC	2 cut(s)	53, 2009
EcoNI	CCTNNNNNAGG	1 cut(s)	1290
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	3 cut(s)	531, 1011, 2200
EcoT14I	CCWWGG	1 cut(s)	657
EcoT38I	GRGCYC	2 cut(s)	55, 2011
ErhI	CCWWGG	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	464
FaqI	GGGAC	1 cut(s)	409
FauI	CCCGC	1 cut(s)	862
FbaI	TGATCA	2 cut(s)	325, 1107
FblI	GTMKAC	3 cut(s)	268, 340, 1768
Fnu4HI	GCNGC	4 cut(s)	2061, 2100, 2130, 2133
FokI	GGATG	4 cut(s)	745, 970, 2189, 2250
FriOI	GRGCYC	2 cut(s)	55, 2011
Fsp4HI	GCNGC	4 cut(s)	2061, 2100, 2130, 2133
FspBI	CTAG	2 cut(s)	747, 1497
GlaI	GCGC	2 cut(s)	7, 1516
GluI	GCNGC	4 cut(s)	2061, 2100, 2130, 2133
GsaI	CCCAGC	2 cut(s)	126, 2051
GsuI	CTGGAG	1 cut(s)	1436
HaeIII	GGCC	5 cut(s)	263, 1103, 1220, 2249, 2414
HapII	CCGG	8 cut(s)	15, 259, 264, 272, 369, 1938, 2250, 2445
HgaI	GACGC	1 cut(s)	1319
HhaI	GCGC	2 cut(s)	8, 1517
Hin6I	GCGC	2 cut(s)	6, 1515
HinP1I	GCGC	2 cut(s)	6, 1515
HincII	GTYRAC	1 cut(s)	1458
HindII	GTYRAC	1 cut(s)	1458
HindIII	AAGCTT	2 cut(s)	837, 1943
HinfI	GANTC	4 cut(s)	450, 1960, 2093, 2549
HpaII	CCGG	8 cut(s)	15, 259, 264, 272, 369, 1938, 2250, 2445
HphI	GGTGA	8 cut(s)	89, 1275, 1606, 1685, 2024, 2233, 2264, 2530
Hpy166II	GTNNAC	9 cut(s)	207, 269, 341, 588, 882, 1458, 1488, 1769, 2032
Hpy188I	TCNGA	3 cut(s)	858, 2275, 2546
Hpy188III	TCNNGA	5 cut(s)	1337, 1663, 1710, 1745, 2458
Hpy8I	GTNNAC	9 cut(s)	207, 269, 341, 588, 882, 1458, 1488, 1769, 2032
HpyCH4IV	ACGT	3 cut(s)	88, 590, 1490
HpyF10VI	GCNNNNNNNGC	6 cut(s)	219, 260, 1391, 1400, 1409, 1546
HpyF3I	CTNAG	7 cut(s)	178, 1574, 1598, 1684, 1834, 2041, 2474
HpySE526I	ACGT	3 cut(s)	88, 590, 1490
HspAI	GCGC	2 cut(s)	6, 1515
KpnI	GGTACC	1 cut(s)	1120
Ksp22I	TGATCA	2 cut(s)	325, 1107
Kzo9I	GATC	6 cut(s)	325, 1107, 1704, 1888, 1921, 2447
LmnI	GCTCC	4 cut(s)	24, 1537, 1900, 2358
Lsp1109I	GCAGC	4 cut(s)	2072, 2086, 2116, 2144
LweI	GCATC	6 cut(s)	546, 992, 1036, 1059, 1752, 1981
MaeI	CTAG	2 cut(s)	747, 1497
MaeII	ACGT	3 cut(s)	88, 590, 1490
MaeIII	GTNAC	9 cut(s)	506, 784, 814, 898, 1090, 1281, 1612, 2036, 2492
MalI	GATC	6 cut(s)	327, 1109, 1706, 1890, 1923, 2449
MboI	GATC	6 cut(s)	325, 1107, 1704, 1888, 1921, 2447
MboII	GAAGA	9 cut(s)	105, 190, 285, 392, 941, 982, 1433, 2236, 2378
MflI	RGATCY	1 cut(s)	2447
MhlI	GDGCHC	5 cut(s)	55, 1609, 1905, 2011, 2355
MlsI	TGGCCA	1 cut(s)	2414
MluNI	TGGCCA	1 cut(s)	2414
MlyI	GAGTC	2 cut(s)	459, 2087
MmeI	TCCRAC	2 cut(s)	519, 813
Mox20I	TGGCCA	1 cut(s)	2414
MroXI	GAANNNNTTC	1 cut(s)	1154
MscI	TGGCCA	1 cut(s)	2414
MslI	CAYNNNNRTG	3 cut(s)	694, 960, 1214
Msp20I	TGGCCA	1 cut(s)	2414
MspA1I	CMGCKG	2 cut(s)	2099, 2135
MspI	CCGG	8 cut(s)	15, 259, 264, 272, 369, 1938, 2250, 2445
MspR9I	CCNGG	8 cut(s)	15, 259, 260, 370, 533, 1013, 2202, 2445
MvaI	CCWGG	3 cut(s)	533, 1013, 2202
MwoI	GCNNNNNNNGC	6 cut(s)	219, 260, 1391, 1400, 1409, 1546
NciI	CCSGG	5 cut(s)	15, 259, 260, 370, 2445
NcoI	CCATGG	1 cut(s)	657
NdeII	GATC	6 cut(s)	325, 1107, 1704, 1888, 1921, 2447
NlaIV	GGNNCC	4 cut(s)	26, 316, 397, 1118
NmeAIII	GCCGAG	1 cut(s)	1958
NmuCI	GTSAC	3 cut(s)	1281, 1612, 2492
NspI	RCATGY	3 cut(s)	718, 1253, 1978
PaeI	GCATGC	1 cut(s)	1978
PciI	ACATGT	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	1154
PfeI	GAWTC	2 cut(s)	1960, 2549
PflMI	CCANNNNNTGG	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	2443
PinAI	ACCGGT	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	2062, 2101, 2131, 2134
PleI	GAGTC	2 cut(s)	458, 2087
PpsI	GAGTC	2 cut(s)	458, 2087
Ppu21I	YACGTR	1 cut(s)	591
PpuMI	RGGWCCY	1 cut(s)	396
PscI	ACATGT	1 cut(s)	714
PshBI	ATTAAT	2 cut(s)	1506, 2510
PsiI	TTATAA	2 cut(s)	1262, 1967
Psp124BI	GAGCTC	2 cut(s)	55, 2011
Psp1406I	AACGTT	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	3 cut(s)	531, 1011, 2200
PspFI	CCCAGC	2 cut(s)	122, 2047
PspGI	CCWGG	3 cut(s)	531, 1011, 2200
PspN4I	GGNNCC	4 cut(s)	26, 316, 397, 1118
PspPI	GGNCC	5 cut(s)	261, 396, 1219, 1520, 1870
PspPPI	RGGWCCY	1 cut(s)	396
PstI	CTGCAG	3 cut(s)	1125, 1990, 2134
PsuI	RGATCY	1 cut(s)	2447
PvuII	CAGCTG	1 cut(s)	2135
RsaI	GTAC	5 cut(s)	206, 1118, 1248, 1822, 1928
RsaNI	GTAC	5 cut(s)	205, 1117, 1247, 1821, 1927
RseI	CAYNNNNRTG	3 cut(s)	694, 960, 1214
SacI	GAGCTC	2 cut(s)	55, 2011
SatI	GCNGC	4 cut(s)	2061, 2100, 2130, 2133
Sau3AI	GATC	6 cut(s)	325, 1107, 1704, 1888, 1921, 2447
Sau96I	GGNCC	5 cut(s)	261, 396, 1219, 1520, 1870
SchI	GAGTC	2 cut(s)	459, 2087
ScrFI	CCNGG	8 cut(s)	15, 259, 260, 370, 533, 1013, 2202, 2445
SduI	GDGCHC	5 cut(s)	55, 1609, 1905, 2011, 2355
SfaNI	GCATC	6 cut(s)	546, 992, 1036, 1059, 1752, 1981
SfcI	CTRYAG	4 cut(s)	1121, 1290, 1986, 2130
SinI	GGWCC	3 cut(s)	396, 1520, 1870
SmaI	CCCGGG	1 cut(s)	260
SmiMI	CAYNNNNRTG	3 cut(s)	694, 960, 1214
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
SnaBI	TACGTA	1 cut(s)	591
SphI	GCATGC	1 cut(s)	1978
SsiI	CCGC	3 cut(s)	220, 869, 2097
SspI	AATATT	5 cut(s)	997, 1639, 1864, 1885, 2122
SspMI	CTAG	2 cut(s)	747, 1497
SstI	GAGCTC	2 cut(s)	55, 2011
StyD4I	CCNGG	8 cut(s)	13, 257, 258, 368, 531, 1011, 2200, 2443
StyI	CCWWGG	1 cut(s)	657
TaiI	ACGT	3 cut(s)	91, 593, 1493
TaqI	TCGA	4 cut(s)	153, 201, 408, 2557
TatI	WGTACW	4 cut(s)	204, 1246, 1820, 1926
TfiI	GAWTC	2 cut(s)	1960, 2549
TscAI	CASTG	7 cut(s)	362, 1039, 1117, 1539, 1990, 2407, 2503
TseFI	GTSAC	3 cut(s)	1281, 1612, 2492
TseI	GCWGC	4 cut(s)	2060, 2099, 2129, 2132
Tsp45I	GTSAC	3 cut(s)	1281, 1612, 2492
TspMI	CCCGGG	1 cut(s)	258
TspRI	CASTG	7 cut(s)	362, 1039, 1117, 1539, 1990, 2407, 2503
Van91I	CCANNNNNTGG	1 cut(s)	538
VpaK11BI	GGWCC	3 cut(s)	396, 1520, 1870
VspI	ATTAAT	2 cut(s)	1506, 2510
XagI	CCTNNNNNAGG	1 cut(s)	1290
XapI	RAATTY	2 cut(s)	1443, 1774
XceI	RCATGY	3 cut(s)	718, 1253, 1978
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2573
XmaI	CCCGGG	1 cut(s)	258
XmiI	GTMKAC	3 cut(s)	268, 340, 1768
XmnI	GAANNNNTTC	1 cut(s)	1154
XspI	CTAG	2 cut(s)	747, 1497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.