FvH4_3g29150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0019213
Physical Location & Seq
Reverse (-)
22273157 .. 22274099
943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29150.t1

Sequence Viewer

Length: 471 bp
ATGTTTCCTGTGAAACTCGCTGTGTTTTTCACAGCAATGTGTTTCTCTGTCTTCTCCAACCTTGTTTTCATCAAGGAGGTTTCTGGAGACGCCGCCCCTTCTTCTGCTAGTGCTAACTGTGTGACTTGCACTACATGTCAGTACCCATGTCCTCCTGCTGGAGGGTACCCTTTATACCCTCCACCTCCACCATCACAGACCGGAGAGTATGCAGCACCGCCGCCTCCTCCTCCTCCTTCTCAACAGCCTAGTCGTCCAGGAAAATGTCCCCCAGGTCAGTACCAGTGCTGCCAAAACCCTCAGGGATACTCCCCTCCTGGCCAGTTTCCTCAGTACCCCACTCCAGGCACATTTGCAGGAGGAGGAGGATATGTGCCTTACCCTTATGGTTCGGCTTCTTCGTCTCCTTTGTCAATCTTGCTTTCAGTACTTCTGATGGTATTGCTGTTCTCATCTGGTGCTTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.27

Weight (kDa)

7.46

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29150
prunus_persica Prupe.4G243900_v2.0.a1
rosa_rugosa Rorug05G0280000
rosa_samantha Rh5AG351200 Rh5BG363400 Rh5CG387800 Rh5DG378000
rosa_wichuraiana Rw5G033210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AciI CCGC 3 cut(s) 93, 218, 221
AcoI YGGCCR 1 cut(s) 319
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 5 cut(s) 143, 167, 281, 335, 429
AfiI CCNNNNNNNGG 3 cut(s) 158, 161, 344
AflIII ACRYGT 1 cut(s) 134
AjnI CCWGG 4 cut(s) 256, 271, 316, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
Alw26I GTCTC 2 cut(s) 81, 408
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 2 cut(s) 212, 288
Asp718I GGTACC 1 cut(s) 165
AxyI CCTNAGG 1 cut(s) 300
BalI TGGCCA 1 cut(s) 321
BanI GGYRCC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 224, 275
BccI CCATC 2 cut(s) 199, 430
BciT130I CCWGG 4 cut(s) 258, 273, 318, 345
BciVI GTATCC 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 81, 408
BfaI CTAG 2 cut(s) 108, 249
BfuI GTATCC 1 cut(s) 299
BisI GCNGC 4 cut(s) 93, 213, 221, 289
BlsI GCNGC 4 cut(s) 94, 214, 222, 290
BmcAI AGTACT 1 cut(s) 429
Bme1390I CCNGG 4 cut(s) 258, 273, 318, 345
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 4 cut(s) 258, 273, 318, 345
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 3 cut(s) 105, 180, 327
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 161, 344
Bse1I ACTGG 2 cut(s) 283, 322
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 4 cut(s) 258, 273, 318, 345
BseDI CCNNGG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 158, 161, 344
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 314, 344
BseNI ACTGG 2 cut(s) 283, 322
BseRI GAGGAG 5 cut(s) 216, 219, 222, 375, 378
BseXI GCAGC 2 cut(s) 224, 275
BshFI GGCC 1 cut(s) 321
BshNI GGYRCC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 3 cut(s) 158, 161, 344
BsmAI GTCTC 2 cut(s) 81, 408
BsmBI CGTCTC 2 cut(s) 81, 408
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 1 cut(s) 321
BspACI CCGC 3 cut(s) 93, 218, 221
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 313, 343
BspLI GGNNCC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 2 cut(s) 283, 322
BssECI CCNNGG 1 cut(s) 271
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 4 cut(s) 258, 273, 318, 345
Bst4CI ACNGT 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 300, 330
BstENI CCTNNNNNAGG 1 cut(s) 159
BstMAI GTCTC 2 cut(s) 81, 408
BstNI CCWGG 4 cut(s) 258, 273, 318, 345
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 4 cut(s) 256, 271, 316, 343
BstV1I GCAGC 2 cut(s) 224, 275
BstV2I GAAGAC 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 300
BsuI GTATCC 1 cut(s) 299
BsuRI GGCC 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 290
CseI GACGC 1 cut(s) 98
Csp6I GTAC 5 cut(s) 142, 166, 280, 334, 428
CviAII CATG 2 cut(s) 135, 147
CviJI RGCY 3 cut(s) 247, 321, 395
CviKI_1 RGCY 3 cut(s) 247, 321, 395
CviQI GTAC 5 cut(s) 142, 166, 280, 334, 428
DdeI CTNAG 2 cut(s) 300, 330
EaeI YGGCCR 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 300
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoRII CCWGG 4 cut(s) 256, 271, 316, 343
Esp3I CGTCTC 2 cut(s) 81, 408
FaeI CATG 2 cut(s) 138, 150
FaiI YATR 6 cut(s) 136, 148, 175, 210, 372, 387
FaqI GGGAC 1 cut(s) 252
FatI CATG 2 cut(s) 134, 146
Fnu4HI GCNGC 4 cut(s) 93, 213, 221, 289
Fsp4HI GCNGC 4 cut(s) 93, 213, 221, 289
FspBI CTAG 2 cut(s) 108, 249
GluI GCNGC 4 cut(s) 93, 213, 221, 289
GsuI CTGGAG 3 cut(s) 105, 180, 327
HaeIII GGCC 1 cut(s) 321
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 138, 150
HpaII CCGG 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 435
Hpy188III TCNNGA 1 cut(s) 84
HpyAV CCTTC 2 cut(s) 108, 246
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 3 cut(s) 129, 212, 356
HpyF3I CTNAG 2 cut(s) 300, 330
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 138, 150
KpnI GGTACC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 224, 275
MaeI CTAG 2 cut(s) 108, 249
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 3 cut(s) 43, 93, 390
MlsI TGGCCA 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 81
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MseI TTAA 1 cut(s) 469
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 4 cut(s) 258, 273, 318, 345
MvaI CCWGG 4 cut(s) 258, 273, 318, 345
NlaIII CATG 2 cut(s) 138, 150
NlaIV GGNNCC 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PfoI TCCNGGA 1 cut(s) 256
PkrI GCNGC 4 cut(s) 94, 214, 222, 290
PscI ACATGT 1 cut(s) 134
Psp6I CCWGG 4 cut(s) 256, 271, 316, 343
PspGI CCWGG 4 cut(s) 256, 271, 316, 343
PspN4I GGNNCC 1 cut(s) 167
RsaI GTAC 5 cut(s) 143, 167, 281, 335, 429
RsaNI GTAC 5 cut(s) 142, 166, 280, 334, 428
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 4 cut(s) 93, 213, 221, 289
ScaI AGTACT 1 cut(s) 429
ScrFI CCNGG 4 cut(s) 258, 273, 318, 345
SetI ASST 4 cut(s) 63, 81, 187, 277
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 3 cut(s) 93, 218, 221
SspMI CTAG 2 cut(s) 108, 249
StyD4I CCNGG 4 cut(s) 256, 271, 316, 343
TaaI ACNGT 1 cut(s) 119
TatI WGTACW 1 cut(s) 427
TauI GCSGC 2 cut(s) 95, 223
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 1 cut(s) 290
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 2 cut(s) 212, 288
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 1 cut(s) 290
XagI CCTNNNNNAGG 1 cut(s) 159
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 108, 249
ZrmI AGTACT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.