Rh5CG387800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019213
Physical Location & Seq
Reverse (-)
51093401 .. 51093871
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG387800.1

Sequence Viewer

Length: 471 bp
ATGTTTCCTCTGAAACTCGCTGTGTTTTTCACAGCACTGTGTTTGTCTGTCTTCTCCAACCTTGTTTTCATCAAGGAGATCTCTGGAGACGCCACACCTGCTTCTCCTAGTGCTAATTGCGTCACTTGCACTACATGTCAGTACCCATGTCCTCCCGCAGGAGGGGACCCCTTATATCCCCCACCTCCACCATCACAAACCGGAGAGTACCAGCCACCGCCACCGCCTCAACAGCCTAGTCATCAAGGAAAATGTCCCCCAGGTCAGTATCAGTGTTGCCAATACCCTCAGGGATACTCCCCTCCGGGCCCGATTCCTCAGTACCTCACCCCTCCAGGGACCTTTGGGGGAGGAGGAGGAGGAGGAGGAGGATATGTGCCTTACCCTTACAATTCGGCTTCTTCGTCTCCTTTGTCAGTCTTGCTTTCAGTACTTGTGATGGTGCTGTTCTCATCTGCTGTTATCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.19

Weight (kDa)

5.46

Isoelectric Point (pI)

62.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29150
prunus_persica Prupe.4G243900_v2.0.a1
rosa_rugosa Rorug05G0280000
rosa_samantha Rh5AG351200 Rh5BG363400 Rh5CG387800 Rh5DG378000
rosa_wichuraiana Rw5G033210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 3 cut(s) 156, 218, 224
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 143, 209, 323, 432
AfiI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
AflIII ACRYGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 259, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
Alw26I GTCTC 2 cut(s) 81, 411
AoxI GGCC 1 cut(s) 307
ApaI GGGCCC 1 cut(s) 311
AspS9I GGNCC 4 cut(s) 166, 307, 308, 339
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 166, 339
AxyI CCTNAGG 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 43
BccI CCATC 2 cut(s) 199, 433
BciT130I CCWGG 2 cut(s) 261, 336
BciVI GTATCC 1 cut(s) 287
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 81, 411
BfaI CTAG 2 cut(s) 108, 237
BfuAI ACCTGC 1 cut(s) 106
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 432
Bme1390I CCNGG 3 cut(s) 261, 306, 336
Bme18I GGWCC 2 cut(s) 166, 339
BmgT120I GGNCC 4 cut(s) 166, 307, 308, 339
BmiI GGNNCC 4 cut(s) 167, 168, 309, 340
BmrFI CCNGG 3 cut(s) 261, 306, 336
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 105, 318
BpuMI CCSGG 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 259, 335
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
Bse21I CCTNAGG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 261, 336
BseDI CCNNGG 2 cut(s) 259, 335
BseLI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
BseMII CTCAG 2 cut(s) 302, 332
BseRI GAGGAG 6 cut(s) 366, 369, 372, 375, 378, 381
BseSI GKGCMC 1 cut(s) 311
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 201, 305
BslFI GGGAC 3 cut(s) 179, 240, 352
BslI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
BsmAI GTCTC 2 cut(s) 81, 411
BsmBI CGTCTC 2 cut(s) 81, 411
BsmFI GGGAC 3 cut(s) 179, 240, 352
BsnI GGCC 1 cut(s) 309
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 3 cut(s) 156, 218, 224
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 2 cut(s) 301, 331
BspLI GGNNCC 4 cut(s) 167, 168, 309, 340
BspMI ACCTGC 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 259, 335
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 261, 336
Bst4CI ACNGT 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 288, 318
BstENI CCTNNNNNAGG 1 cut(s) 156
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 81, 411
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 98, 126, 232
BstNI CCWGG 2 cut(s) 261, 336
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 259, 304, 334
BstSLI GKGCMC 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 288
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 35, 278
BveI ACCTGC 1 cut(s) 106
Cfr13I GGNCC 4 cut(s) 166, 307, 308, 339
CseI GACGC 2 cut(s) 98, 109
Csp6I GTAC 4 cut(s) 142, 208, 322, 431
CviAII CATG 2 cut(s) 135, 147
CviJI RGCY 4 cut(s) 214, 235, 309, 398
CviKI_1 RGCY 4 cut(s) 214, 235, 309, 398
CviQI GTAC 4 cut(s) 142, 208, 322, 431
DdeI CTNAG 2 cut(s) 288, 318
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 166, 339
Eco81I CCTNAGG 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoO109I RGGNCCY 2 cut(s) 166, 339
EcoRII CCWGG 2 cut(s) 259, 334
EcoT38I GRGCYC 1 cut(s) 311
Esp3I CGTCTC 2 cut(s) 81, 411
FaeI CATG 2 cut(s) 138, 150
FaiI YATR 4 cut(s) 136, 148, 175, 375
FaqI GGGAC 3 cut(s) 179, 240, 352
FatI CATG 2 cut(s) 134, 146
FauI CCCGC 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 311
FspBI CTAG 2 cut(s) 108, 237
GsuI CTGGAG 2 cut(s) 105, 318
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 201, 305
HgaI GACGC 2 cut(s) 98, 109
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 138, 150
HinfI GANTC 1 cut(s) 313
HpaII CCGG 2 cut(s) 201, 305
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 126, 232
HpyF3I CTNAG 2 cut(s) 288, 318
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 138, 150
KflI GGGWCCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 78
MaeI CTAG 2 cut(s) 108, 237
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 2 cut(s) 43, 393
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 2 cut(s) 115, 391
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 1 cut(s) 469
MspI CCGG 2 cut(s) 201, 305
MspR9I CCNGG 3 cut(s) 261, 306, 336
MvaI CCWGG 2 cut(s) 261, 336
MwoI GCNNNNNNNGC 3 cut(s) 98, 126, 232
NciI CCSGG 1 cut(s) 306
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 138, 150
NlaIV GGNNCC 4 cut(s) 167, 168, 309, 340
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 106
PciI ACATGT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 401
PfeI GAWTC 1 cut(s) 313
PpuMI RGGWCCY 2 cut(s) 166, 339
PscI ACATGT 1 cut(s) 134
Psp5II RGGWCCY 2 cut(s) 166, 339
Psp6I CCWGG 2 cut(s) 259, 334
PspGI CCWGG 2 cut(s) 259, 334
PspN4I GGNNCC 4 cut(s) 167, 168, 309, 340
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 4 cut(s) 166, 307, 308, 339
PspPPI RGGWCCY 2 cut(s) 166, 339
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 4 cut(s) 143, 209, 323, 432
RsaNI GTAC 4 cut(s) 142, 208, 322, 431
SaqAI TTAA 1 cut(s) 469
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 4 cut(s) 166, 307, 308, 339
ScaI AGTACT 1 cut(s) 432
ScrFI CCNGG 3 cut(s) 261, 306, 336
SduI GDGCHC 1 cut(s) 311
SetI ASST 6 cut(s) 63, 100, 187, 265, 327, 344
SinI GGWCC 2 cut(s) 166, 339
Sse9I AATT 2 cut(s) 115, 391
SsiI CCGC 3 cut(s) 156, 218, 224
SspMI CTAG 2 cut(s) 108, 237
StyD4I CCNGG 3 cut(s) 259, 304, 334
TaaI ACNGT 1 cut(s) 39
TasI AATT 2 cut(s) 115, 391
TatI WGTACW 1 cut(s) 430
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 2 cut(s) 42, 278
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 2 cut(s) 42, 278
VpaK11BI GGWCC 2 cut(s) 166, 339
XagI CCTNNNNNAGG 1 cut(s) 156
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 108, 237
ZrmI AGTACT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.