Rw5G033210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0019213
Physical Location & Seq
Reverse (-)
56370789 .. 56371250
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033210.1

Sequence Viewer

Length: 462 bp
ATGTTTCCTCTGAAACTCGCTGTGTTTTTCACAGCACTGTGTTTGTCTGTCTTCTCCAACCTTGTTTTCATCAAGGAGATCTCTGGAGACGCGACACCTTCTTCTCCTAGTGCTAATTGCGTCACTTGCACTACATGTCAGTACCCATGTCCTCCCGCAGGAGGGGACCCCTTATATCCCCCACCTCCACCATCACAAACCGGAGAGTACCCGCCACCGCCACCACCGCCACCGCCTCAACAGCCTAGTCATCAAGGAAAATGCCCCCCAGGTCAGTATCAGTACCCTCAGGGATACTCCCCTCCGGGCCCAATTCCTCAGTACCTCACCCCTCCAGGGACCTTTGGAGGAGGAGGAGGAGGATATGTGCCTTACCCTTACAATTCGGCTTCTTCGTCTCCTTTGTCAGTCTTGCTTTCAGTACTTGTGATGGTGCTGTTCTCATCTGCTGTTTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

15.96

Weight (kDa)

5.46

Isoelectric Point (pI)

67.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29150
prunus_persica Prupe.4G243900_v2.0.a1
rosa_rugosa Rorug05G0280000
rosa_samantha Rh5AG351200 Rh5BG363400 Rh5CG387800 Rh5DG378000
rosa_wichuraiana Rw5G033210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 92
AciI CCGC 5 cut(s) 156, 212, 218, 227, 233
AfaI GTAC 5 cut(s) 143, 209, 284, 323, 423
AfiI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
AflIII ACRYGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 268, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
Alw26I GTCTC 2 cut(s) 81, 402
AoxI GGCC 1 cut(s) 307
ApaI GGGCCC 1 cut(s) 311
AspS9I GGNCC 4 cut(s) 166, 307, 308, 339
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 166, 339
AxyI CCTNAGG 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 43
BccI CCATC 2 cut(s) 199, 424
BciT130I CCWGG 2 cut(s) 270, 336
BciVI GTATCC 1 cut(s) 287
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 81, 402
BfaI CTAG 2 cut(s) 108, 246
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 423
Bme1390I CCNGG 3 cut(s) 270, 306, 336
Bme18I GGWCC 2 cut(s) 166, 339
BmgT120I GGNCC 4 cut(s) 166, 307, 308, 339
BmiI GGNNCC 4 cut(s) 167, 168, 309, 340
BmrFI CCNGG 3 cut(s) 270, 306, 336
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 105, 318
BpuMI CCSGG 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 268, 335
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
Bse21I CCTNAGG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 270, 336
BseDI CCNNGG 2 cut(s) 268, 335
BseLI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
BseMII CTCAG 2 cut(s) 302, 332
BseRI GAGGAG 4 cut(s) 363, 366, 369, 372
BseSI GKGCMC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 201, 305
BslFI GGGAC 2 cut(s) 179, 352
BslI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
BsmAI GTCTC 2 cut(s) 81, 402
BsmBI CGTCTC 2 cut(s) 81, 402
BsmFI GGGAC 2 cut(s) 179, 352
BsnI GGCC 1 cut(s) 309
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 5 cut(s) 156, 212, 218, 227, 233
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 2 cut(s) 301, 331
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 4 cut(s) 167, 168, 309, 340
BssECI CCNNGG 2 cut(s) 268, 335
BssMI GATC 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 270, 336
Bst4CI ACNGT 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 288, 318
BstENI CCTNNNNNAGG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 81, 402
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 126, 226, 241
BstNI CCWGG 2 cut(s) 270, 336
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 268, 304, 334
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 288
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 35
Cfr13I GGNCC 4 cut(s) 166, 307, 308, 339
CseI GACGC 2 cut(s) 98, 109
Csp6I GTAC 5 cut(s) 142, 208, 283, 322, 422
CviAII CATG 2 cut(s) 135, 147
CviJI RGCY 3 cut(s) 244, 309, 389
CviKI_1 RGCY 3 cut(s) 244, 309, 389
CviQI GTAC 5 cut(s) 142, 208, 283, 322, 422
DdeI CTNAG 2 cut(s) 288, 318
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 166, 339
Eco81I CCTNAGG 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoO109I RGGNCCY 2 cut(s) 166, 339
EcoRII CCWGG 2 cut(s) 268, 334
EcoT38I GRGCYC 1 cut(s) 311
Esp3I CGTCTC 2 cut(s) 81, 402
FaeI CATG 2 cut(s) 138, 150
FaiI YATR 4 cut(s) 136, 148, 175, 366
FaqI GGGAC 2 cut(s) 179, 352
FatI CATG 2 cut(s) 134, 146
FauI CCCGC 2 cut(s) 163, 219
FriOI GRGCYC 1 cut(s) 311
FspBI CTAG 2 cut(s) 108, 246
GsuI CTGGAG 2 cut(s) 105, 318
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 201, 305
HgaI GACGC 2 cut(s) 98, 109
Hin1II CATG 2 cut(s) 138, 150
HpaII CCGG 2 cut(s) 201, 305
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 226, 241
HpyF3I CTNAG 2 cut(s) 288, 318
Hsp92II CATG 2 cut(s) 138, 150
KflI GGGWCCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 9 cut(s) 69, 144, 214, 255, 275, 282, 318, 321, 348
MaeI CTAG 2 cut(s) 108, 246
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 3 cut(s) 43, 93, 384
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 3 cut(s) 115, 312, 382
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 1 cut(s) 460
MspI CCGG 2 cut(s) 201, 305
MspR9I CCNGG 3 cut(s) 270, 306, 336
MvaI CCWGG 2 cut(s) 270, 336
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 126, 226, 241
NciI CCSGG 1 cut(s) 306
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 138, 150
NlaIV GGNNCC 4 cut(s) 167, 168, 309, 340
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 392
PpuMI RGGWCCY 2 cut(s) 166, 339
PscI ACATGT 1 cut(s) 134
Psp5II RGGWCCY 2 cut(s) 166, 339
Psp6I CCWGG 2 cut(s) 268, 334
PspGI CCWGG 2 cut(s) 268, 334
PspN4I GGNNCC 4 cut(s) 167, 168, 309, 340
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 4 cut(s) 166, 307, 308, 339
PspPPI RGGWCCY 2 cut(s) 166, 339
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 5 cut(s) 143, 209, 284, 323, 423
RsaNI GTAC 5 cut(s) 142, 208, 283, 322, 422
SaqAI TTAA 1 cut(s) 460
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 4 cut(s) 166, 307, 308, 339
ScaI AGTACT 1 cut(s) 423
ScrFI CCNGG 3 cut(s) 270, 306, 336
SduI GDGCHC 1 cut(s) 311
SetI ASST 6 cut(s) 63, 100, 187, 274, 327, 344
SinI GGWCC 2 cut(s) 166, 339
Sse9I AATT 3 cut(s) 115, 312, 382
SsiI CCGC 5 cut(s) 156, 212, 218, 227, 233
SspMI CTAG 2 cut(s) 108, 246
StyD4I CCNGG 3 cut(s) 268, 304, 334
TaaI ACNGT 1 cut(s) 39
TasI AATT 3 cut(s) 115, 312, 382
TatI WGTACW 1 cut(s) 421
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 166, 339
XagI CCTNNNNNAGG 1 cut(s) 156
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 108, 246
ZrmI AGTACT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.