Prupe.4G243900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0019213
Physical Location & Seq
Forward (+)
16188188 .. 16189663
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G243900.1

Sequence Viewer

Length: 432 bp
ATGTTTCCTGCAAAACTTGTTTTTGTCACAGCACTCTGTTTCTCTGTCTTCTTCAACCTTGTTTTCACTGGGGATATCACTAGAGATGCCATATCTTCTCCTACAGATTGTGCCAATTGCCCTACATGTCAGTGCCCTCCTTCCATTCCAAATCCAGGGTACCCTTTATATGGCCCTCCTCCACCAGGACCACCCCCACCATCAATTCCTAGCTACCCGCCGCCGCCGCCTCAACAGCATGGTCAAGGAAAATGCCCCCCAACTCAGCCTGCTCAATGCTGCCAGTACCCTCAATATCTCTCTCCACCAGGTGCCTCAGGAGGATTTGTGCCTTACCCTGATGGCACCCATGCAGGTGCAGCTTCATCTGCTTTGCCAATCTTCCTTTCAGTTATGATGCTGTTGTTGTCCTCCTCAGCTGTTTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

14.94

Weight (kDa)

5.95

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29150
prunus_persica Prupe.4G243900_v2.0.a1
rosa_rugosa Rorug05G0280000
rosa_samantha Rh5AG351200 Rh5BG363400 Rh5CG387800 Rh5DG378000
rosa_wichuraiana Rw5G033210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 344
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 3 cut(s) 159, 311, 344
AciI CCGC 4 cut(s) 218, 221, 224, 227
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 2 cut(s) 161, 287
AfiI CCNNNNNNNGG 3 cut(s) 155, 170, 185
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 3 cut(s) 154, 184, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AluBI AGCT 3 cut(s) 213, 362, 419
AluI AGCT 3 cut(s) 213, 362, 419
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 279, 359
Asp718I GGTACC 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 173, 188
AvaII GGWCC 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 137
BanI GGYRCC 3 cut(s) 159, 311, 344
BbsI GAAGAC 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 415
BbvI GCAGC 2 cut(s) 266, 371
BccI CCATC 2 cut(s) 208, 335
BciT130I CCWGG 3 cut(s) 156, 186, 309
BfaI CTAG 2 cut(s) 81, 210
BfmI CTRYAG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 344
BisI GCNGC 5 cut(s) 221, 224, 227, 280, 360
BlsI GCNGC 5 cut(s) 222, 225, 228, 281, 361
Bme1390I CCNGG 3 cut(s) 156, 186, 309
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 173, 188
BmiI GGNNCC 3 cut(s) 161, 313, 346
BmrFI CCNGG 3 cut(s) 156, 186, 309
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 76, 387
BmuI ACTGGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 170, 185
Bse1I ACTGG 2 cut(s) 73, 283
Bse21I CCTNAGG 1 cut(s) 316
BseBI CCWGG 3 cut(s) 156, 186, 309
BseDI CCNNGG 1 cut(s) 155
BseLI CCNNNNNNNGG 3 cut(s) 155, 170, 185
BseMII CTCAG 3 cut(s) 278, 330, 429
BseNI ACTGG 2 cut(s) 73, 283
BseRI GAGGAG 2 cut(s) 168, 403
BseSI GKGCMC 1 cut(s) 137
BseXI GCAGC 2 cut(s) 266, 371
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 3 cut(s) 159, 311, 344
BslI CCNNNNNNNGG 3 cut(s) 155, 170, 185
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 137
BspACI CCGC 4 cut(s) 218, 221, 224, 227
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 3 cut(s) 277, 329, 428
BspLI GGNNCC 3 cut(s) 161, 313, 346
BspMI ACCTGC 1 cut(s) 344
BspT107I GGYRCC 3 cut(s) 159, 311, 344
BsrI ACTGG 2 cut(s) 73, 283
BssECI CCNNGG 1 cut(s) 155
Bst2UI CCWGG 3 cut(s) 156, 186, 309
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 3 cut(s) 264, 316, 415
BstENI CCTNNNNNAGG 1 cut(s) 183
BstMWI GCNNNNNNNGC 4 cut(s) 226, 235, 359, 368
BstNI CCWGG 3 cut(s) 156, 186, 309
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 3 cut(s) 154, 184, 307
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 266, 371
BstV2I GAAGAC 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 316
BsuRI GGCC 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 66, 137
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 173, 188
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 2 cut(s) 160, 286
CviAII CATG 3 cut(s) 126, 239, 350
CviJI RGCY 5 cut(s) 174, 213, 268, 362, 419
CviKI_1 RGCY 5 cut(s) 174, 213, 268, 362, 419
CviQI GTAC 2 cut(s) 160, 286
DdeI CTNAG 3 cut(s) 264, 316, 415
DraIII CACNNNGTG 1 cut(s) 311
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 316
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoRII CCWGG 3 cut(s) 154, 184, 307
EcoRV GATATC 1 cut(s) 76
FaeI CATG 3 cut(s) 129, 242, 353
FaiI YATR 7 cut(s) 92, 127, 169, 171, 240, 351, 395
FatI CATG 3 cut(s) 125, 238, 349
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 221, 224, 227, 280, 360
Fsp4HI GCNGC 5 cut(s) 221, 224, 227, 280, 360
FspBI CTAG 2 cut(s) 81, 210
GluI GCNGC 5 cut(s) 221, 224, 227, 280, 360
HaeIII GGCC 1 cut(s) 174
Hin1II CATG 3 cut(s) 129, 242, 353
Hpy188III TCNNGA 1 cut(s) 318
HpyAV CCTTC 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 11, 353, 359
HpyF10VI GCNNNNNNNGC 4 cut(s) 226, 235, 359, 368
HpyF3I CTNAG 3 cut(s) 264, 316, 415
Hsp92II CATG 3 cut(s) 129, 242, 353
KpnI GGTACC 1 cut(s) 163
Lsp1109I GCAGC 2 cut(s) 266, 371
LweI GCATC 2 cut(s) 76, 387
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 2 cut(s) 81, 210
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 4 cut(s) 40, 43, 87, 373
MfeI CAATTG 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 2 cut(s) 115, 204
MnlI CCTC 9 cut(s) 147, 186, 189, 240, 300, 314, 325, 421, 424
MseI TTAA 1 cut(s) 430
MslI CAYNNNNRTG 2 cut(s) 130, 354
MspA1I CMGCKG 1 cut(s) 419
MspR9I CCNGG 3 cut(s) 156, 186, 309
MunI CAATTG 1 cut(s) 115
MvaI CCWGG 3 cut(s) 156, 186, 309
MwoI GCNNNNNNNGC 4 cut(s) 226, 235, 359, 368
NlaIII CATG 3 cut(s) 129, 242, 353
NlaIV GGNNCC 3 cut(s) 161, 313, 346
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 1 cut(s) 129
PaqCI CACCTGC 1 cut(s) 344
PciI ACATGT 1 cut(s) 125
PkrI GCNGC 5 cut(s) 222, 225, 228, 281, 361
PscI ACATGT 1 cut(s) 125
Psp6I CCWGG 3 cut(s) 154, 184, 307
PspGI CCWGG 3 cut(s) 154, 184, 307
PspN4I GGNNCC 3 cut(s) 161, 313, 346
PspPI GGNCC 2 cut(s) 173, 188
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 161, 287
RsaNI GTAC 2 cut(s) 160, 286
RseI CAYNNNNRTG 2 cut(s) 130, 354
SaqAI TTAA 1 cut(s) 430
SatI GCNGC 5 cut(s) 221, 224, 227, 280, 360
Sau96I GGNCC 2 cut(s) 173, 188
ScrFI CCNGG 3 cut(s) 156, 186, 309
SduI GDGCHC 1 cut(s) 137
SetI ASST 6 cut(s) 60, 215, 313, 358, 364, 421
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 2 cut(s) 76, 387
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 130, 354
Sse9I AATT 2 cut(s) 115, 204
SsiI CCGC 4 cut(s) 218, 221, 224, 227
SspMI CTAG 2 cut(s) 81, 210
StyD4I CCNGG 3 cut(s) 154, 184, 307
TasI AATT 2 cut(s) 115, 204
TauI GCSGC 3 cut(s) 223, 226, 229
Tru1I TTAA 1 cut(s) 430
Tru9I TTAA 1 cut(s) 430
TscAI CASTG 2 cut(s) 73, 137
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 2 cut(s) 279, 359
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 354
TspRI CASTG 2 cut(s) 73, 137
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 183
XceI RCATGY 1 cut(s) 129
XspI CTAG 2 cut(s) 81, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.