Rh5BG363400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0019213
Physical Location & Seq
Reverse (-)
56945089 .. 56945559
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG363400.1

Sequence Viewer

Length: 471 bp
ATGTTTCCTCTGAAACTCGCTGTGTTTTTCACAGCACTGTGTTTGTCTGTCTTCTCCAACCTTGTTTTCATCAAGGAGATCTCTGGAGACGCCACACCTTCTTCTCCTAGTGCTAATTGCGTCACTTGCACTACATGTCAGTACCCATGTCCTCCCGCAGGAGGGGACCCCTTATATCCCCCACCTCCACCATCACAAACCGGAGAGTACCCGCCACCGCCACCACCGCCACCGCCTCAACAGCCTAGTCATCAAGGAAAATGTCCCCCAGGTCAGTATCAGTGTTGCCAATACCCTCAGGGATACTCCCCTCCGGGCCCGATTCCTCAGTACCTCACCCCTCCAGGGACCTTTGGAGGAGGAGGAGGAGGATATGTGCCTTACCCTTACAATTCGGCTTCTTCGTCTCCTTTGTCAGTCTTGCTTTCAGTACTTGTGATGATGCTGTTCTCATCTGCTGTTTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.33

Weight (kDa)

5.46

Isoelectric Point (pI)

65.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29150
prunus_persica Prupe.4G243900_v2.0.a1
rosa_rugosa Rorug05G0280000
rosa_samantha Rh5AG351200 Rh5BG363400 Rh5CG387800 Rh5DG378000
rosa_wichuraiana Rw5G033210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 156, 212, 218, 227, 233
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 143, 209, 332, 432
AfiI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 345
AflIII ACRYGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 268, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
Alw26I GTCTC 2 cut(s) 81, 411
AoxI GGCC 1 cut(s) 316
ApaI GGGCCC 1 cut(s) 320
AspS9I GGNCC 4 cut(s) 166, 316, 317, 348
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 2 cut(s) 166, 348
AxyI CCTNAGG 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 43
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 270, 345
BciVI GTATCC 1 cut(s) 296
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 81, 411
BfaI CTAG 2 cut(s) 108, 246
BfuI GTATCC 1 cut(s) 296
BglII AGATCT 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 432
Bme1390I CCNGG 3 cut(s) 270, 315, 345
Bme18I GGWCC 2 cut(s) 166, 348
BmgT120I GGNCC 4 cut(s) 166, 316, 317, 348
BmiI GGNNCC 4 cut(s) 167, 168, 318, 349
BmrFI CCNGG 3 cut(s) 270, 315, 345
BmsI GCATC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 105, 327
BpuMI CCSGG 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 268, 344
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 161, 162, 345
Bse21I CCTNAGG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 270, 345
BseDI CCNNGG 2 cut(s) 268, 344
BseLI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 345
BseMII CTCAG 2 cut(s) 311, 341
BseRI GAGGAG 4 cut(s) 372, 375, 378, 381
BseSI GKGCMC 1 cut(s) 320
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 2 cut(s) 201, 314
BslFI GGGAC 3 cut(s) 179, 249, 361
BslI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 345
BsmAI GTCTC 2 cut(s) 81, 411
BsmBI CGTCTC 2 cut(s) 81, 411
BsmFI GGGAC 3 cut(s) 179, 249, 361
BsnI GGCC 1 cut(s) 318
Bsp120I GGGCCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 5 cut(s) 156, 212, 218, 227, 233
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 2 cut(s) 310, 340
BspLI GGNNCC 4 cut(s) 167, 168, 318, 349
BssECI CCNNGG 2 cut(s) 268, 344
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 270, 345
Bst4CI ACNGT 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 297, 327
BstENI CCTNNNNNAGG 1 cut(s) 156
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 81, 411
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 126, 226, 241
BstNI CCWGG 2 cut(s) 270, 345
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 268, 313, 343
BstSLI GKGCMC 1 cut(s) 320
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 297
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 35, 287
Cfr13I GGNCC 4 cut(s) 166, 316, 317, 348
CseI GACGC 2 cut(s) 98, 109
Csp6I GTAC 4 cut(s) 142, 208, 331, 431
CviAII CATG 2 cut(s) 135, 147
CviJI RGCY 3 cut(s) 244, 318, 398
CviKI_1 RGCY 3 cut(s) 244, 318, 398
CviQI GTAC 4 cut(s) 142, 208, 331, 431
DdeI CTNAG 2 cut(s) 297, 327
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 166, 348
Eco81I CCTNAGG 1 cut(s) 297
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoO109I RGGNCCY 2 cut(s) 166, 348
EcoRII CCWGG 2 cut(s) 268, 343
EcoT38I GRGCYC 1 cut(s) 320
Esp3I CGTCTC 2 cut(s) 81, 411
FaeI CATG 2 cut(s) 138, 150
FaiI YATR 4 cut(s) 136, 148, 175, 375
FaqI GGGAC 3 cut(s) 179, 249, 361
FatI CATG 2 cut(s) 134, 146
FauI CCCGC 2 cut(s) 163, 219
FriOI GRGCYC 1 cut(s) 320
FspBI CTAG 2 cut(s) 108, 246
GsuI CTGGAG 2 cut(s) 105, 327
HaeIII GGCC 1 cut(s) 318
HapII CCGG 2 cut(s) 201, 314
HgaI GACGC 2 cut(s) 98, 109
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 138, 150
HinfI GANTC 1 cut(s) 322
HpaII CCGG 2 cut(s) 201, 314
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 226, 241
HpyF3I CTNAG 2 cut(s) 297, 327
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 138, 150
KflI GGGWCCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 9 cut(s) 69, 144, 214, 255, 282, 284, 327, 330, 357
LweI GCATC 1 cut(s) 432
MaeI CTAG 2 cut(s) 108, 246
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 3 cut(s) 43, 93, 393
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 2 cut(s) 115, 391
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 1 cut(s) 469
MspI CCGG 2 cut(s) 201, 314
MspR9I CCNGG 3 cut(s) 270, 315, 345
MvaI CCWGG 2 cut(s) 270, 345
MwoI GCNNNNNNNGC 3 cut(s) 126, 226, 241
NciI CCSGG 1 cut(s) 315
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 138, 150
NlaIV GGNNCC 4 cut(s) 167, 168, 318, 349
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 401
PfeI GAWTC 1 cut(s) 322
PpuMI RGGWCCY 2 cut(s) 166, 348
PscI ACATGT 1 cut(s) 134
Psp5II RGGWCCY 2 cut(s) 166, 348
Psp6I CCWGG 2 cut(s) 268, 343
PspGI CCWGG 2 cut(s) 268, 343
PspN4I GGNNCC 4 cut(s) 167, 168, 318, 349
PspOMI GGGCCC 1 cut(s) 316
PspPI GGNCC 4 cut(s) 166, 316, 317, 348
PspPPI RGGWCCY 2 cut(s) 166, 348
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 4 cut(s) 143, 209, 332, 432
RsaNI GTAC 4 cut(s) 142, 208, 331, 431
SaqAI TTAA 1 cut(s) 469
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 4 cut(s) 166, 316, 317, 348
ScaI AGTACT 1 cut(s) 432
ScrFI CCNGG 3 cut(s) 270, 315, 345
SduI GDGCHC 1 cut(s) 320
SetI ASST 6 cut(s) 63, 100, 187, 274, 336, 353
SfaNI GCATC 1 cut(s) 432
SinI GGWCC 2 cut(s) 166, 348
Sse9I AATT 2 cut(s) 115, 391
SsiI CCGC 5 cut(s) 156, 212, 218, 227, 233
SspMI CTAG 2 cut(s) 108, 246
StyD4I CCNGG 3 cut(s) 268, 313, 343
TaaI ACNGT 1 cut(s) 39
TasI AATT 2 cut(s) 115, 391
TatI WGTACW 1 cut(s) 430
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 2 cut(s) 42, 287
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 2 cut(s) 42, 287
VpaK11BI GGWCC 2 cut(s) 166, 348
XagI CCTNNNNNAGG 1 cut(s) 156
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 108, 246
ZrmI AGTACT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.