Rh5DG378000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019213
Physical Location & Seq
Reverse (-)
57551536 .. 57551973
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG378000.1

Sequence Viewer

Length: 438 bp
ATGTTTCCTCTGAAACTCGCTGTGTTTTTCACAGCACTGTGTTTGTCTGTCTTCTCCAACCTTGTTTTCATCAAGGAGATCTCTGGAGACGCCACACCTTCTTCTCCTAGTGCTAATTGCGTCACTTGCACTACATGTCAGTACCCATGTCCTCCCGCAGGAGGGGACCCCTTATATCCCCCGCCTCCACCATCACAAACCGGAGAGTACCCGCCACCGCCTCAACAGCCTAGTCATCAAGGAAAATGTCCCCCAGGTCAGCCTCAGGGATACTCCCCTCCGGGCCCAATTCCTCAGTACCTCACCCCTCCAGGGACCTTTGGAGGAGGAGGAGGAGGATATGTGCCTTACCCTTACAATTCGGCTTCTTCGTCTCCCTTGTCAGTCTTGCTTTCAGTACTTGTGATGGTGCTGTTCTCATCTGCTGTTTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.02

Weight (kDa)

5.46

Isoelectric Point (pI)

65.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29150
prunus_persica Prupe.4G243900_v2.0.a1
rosa_rugosa Rorug05G0280000
rosa_samantha Rh5AG351200 Rh5BG363400 Rh5CG387800 Rh5DG378000
rosa_wichuraiana Rw5G033210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 156, 182, 212, 218
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 143, 209, 299, 399
AfiI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 312
AflIII ACRYGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 253, 310
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
Alw26I GTCTC 2 cut(s) 81, 378
AoxI GGCC 1 cut(s) 283
ApaI GGGCCC 1 cut(s) 287
AspS9I GGNCC 4 cut(s) 166, 283, 284, 315
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 2 cut(s) 166, 315
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 43
BccI CCATC 2 cut(s) 199, 400
BciT130I CCWGG 2 cut(s) 255, 312
BciVI GTATCC 1 cut(s) 263
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 81, 378
BfaI CTAG 2 cut(s) 108, 231
BfuI GTATCC 1 cut(s) 263
BglII AGATCT 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 399
Bme1390I CCNGG 3 cut(s) 255, 282, 312
Bme18I GGWCC 2 cut(s) 166, 315
BmgT120I GGNCC 4 cut(s) 166, 283, 284, 315
BmiI GGNNCC 4 cut(s) 167, 168, 285, 316
BmrFI CCNGG 3 cut(s) 255, 282, 312
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 105, 294
BpuMI CCSGG 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 253, 311
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 161, 162, 312
Bse21I CCTNAGG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 255, 312
BseDI CCNNGG 2 cut(s) 253, 311
BseLI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 312
BseMII CTCAG 2 cut(s) 278, 308
BseRI GAGGAG 4 cut(s) 339, 342, 345, 348
BseSI GKGCMC 1 cut(s) 287
BshFI GGCC 1 cut(s) 285
BsiSI CCGG 2 cut(s) 201, 281
BslFI GGGAC 3 cut(s) 179, 234, 328
BslI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 312
BsmAI GTCTC 2 cut(s) 81, 378
BsmBI CGTCTC 2 cut(s) 81, 378
BsmFI GGGAC 3 cut(s) 179, 234, 328
BsnI GGCC 1 cut(s) 285
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 4 cut(s) 156, 182, 212, 218
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 277, 307
BspLI GGNNCC 4 cut(s) 167, 168, 285, 316
BssECI CCNNGG 2 cut(s) 253, 311
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 255, 312
Bst4CI ACNGT 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 264, 294
BstENI CCTNNNNNAGG 1 cut(s) 156
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 81, 378
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 126, 226
BstNI CCWGG 2 cut(s) 255, 312
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 253, 280, 310
BstSLI GKGCMC 1 cut(s) 287
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 264
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 35
Cfr13I GGNCC 4 cut(s) 166, 283, 284, 315
CseI GACGC 2 cut(s) 98, 109
Csp6I GTAC 4 cut(s) 142, 208, 298, 398
CviAII CATG 2 cut(s) 135, 147
CviJI RGCY 4 cut(s) 229, 262, 285, 365
CviKI_1 RGCY 4 cut(s) 229, 262, 285, 365
CviQI GTAC 4 cut(s) 142, 208, 298, 398
DdeI CTNAG 2 cut(s) 264, 294
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 166, 315
Eco81I CCTNAGG 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoO109I RGGNCCY 2 cut(s) 166, 315
EcoRII CCWGG 2 cut(s) 253, 310
EcoT38I GRGCYC 1 cut(s) 287
Esp3I CGTCTC 2 cut(s) 81, 378
FaeI CATG 2 cut(s) 138, 150
FaiI YATR 4 cut(s) 136, 148, 175, 342
FaqI GGGAC 3 cut(s) 179, 234, 328
FatI CATG 2 cut(s) 134, 146
FauI CCCGC 3 cut(s) 163, 189, 219
FriOI GRGCYC 1 cut(s) 287
FspBI CTAG 2 cut(s) 108, 231
GsuI CTGGAG 2 cut(s) 105, 294
HaeIII GGCC 1 cut(s) 285
HapII CCGG 2 cut(s) 201, 281
HgaI GACGC 2 cut(s) 98, 109
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 138, 150
HpaII CCGG 2 cut(s) 201, 281
HphI GGTGA 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 226
HpyF3I CTNAG 2 cut(s) 264, 294
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 138, 150
KflI GGGWCCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 9 cut(s) 69, 144, 214, 240, 251, 267, 294, 297, 324
MaeI CTAG 2 cut(s) 108, 231
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 3 cut(s) 43, 93, 360
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 3 cut(s) 115, 288, 358
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 1 cut(s) 436
MspI CCGG 2 cut(s) 201, 281
MspR9I CCNGG 3 cut(s) 255, 282, 312
MvaI CCWGG 2 cut(s) 255, 312
MwoI GCNNNNNNNGC 2 cut(s) 126, 226
NciI CCSGG 1 cut(s) 282
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 138, 150
NlaIV GGNNCC 4 cut(s) 167, 168, 285, 316
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PpuMI RGGWCCY 2 cut(s) 166, 315
PscI ACATGT 1 cut(s) 134
Psp5II RGGWCCY 2 cut(s) 166, 315
Psp6I CCWGG 2 cut(s) 253, 310
PspGI CCWGG 2 cut(s) 253, 310
PspN4I GGNNCC 4 cut(s) 167, 168, 285, 316
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 4 cut(s) 166, 283, 284, 315
PspPPI RGGWCCY 2 cut(s) 166, 315
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 4 cut(s) 143, 209, 299, 399
RsaNI GTAC 4 cut(s) 142, 208, 298, 398
SaqAI TTAA 1 cut(s) 436
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 4 cut(s) 166, 283, 284, 315
ScaI AGTACT 1 cut(s) 399
ScrFI CCNGG 3 cut(s) 255, 282, 312
SduI GDGCHC 1 cut(s) 287
SetI ASST 5 cut(s) 63, 100, 259, 303, 320
SinI GGWCC 2 cut(s) 166, 315
Sse9I AATT 3 cut(s) 115, 288, 358
SsiI CCGC 4 cut(s) 156, 182, 212, 218
SspMI CTAG 2 cut(s) 108, 231
StyD4I CCNGG 3 cut(s) 253, 280, 310
TaaI ACNGT 1 cut(s) 39
TasI AATT 3 cut(s) 115, 288, 358
TatI WGTACW 1 cut(s) 397
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 166, 315
XagI CCTNNNNNAGG 1 cut(s) 156
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 108, 231
ZrmI AGTACT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.