Rh5AG351200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019213
Physical Location & Seq
Reverse (-)
58187436 .. 58189067
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG351200.1

Sequence Viewer

Length: 465 bp
ATGTTTCCTCTGAAACTCGCTGTGTTTTTCACAGCACTGTGTTTGTCTGTCTTCTCCAACCTTGTTTTCATCAAGGAGATCTCTGGAGACGCCACACCTTCTTCTCCTAGTGCTAATTGCGTCACTTGCACTACATGTCAGTACCCATGTCCTCCCGCAGGAGGGGACCCATATCCCCCACCTCCACCATCACAAACCGGAGAGTACCCGCCACCGCCACCGCCTCAACAGCCTAGTCATCAAGGAAAATGTCCCCCAGGTCAGTATCAGTGTTGCCAATACCCTCAGGGATACTCCCCTCCGGGCCCGATTCCTCAGTACCTCACCCCTCCAGGGACCTTTGGAGGAGGAGGAGGAGGAGGAGGATATGTGCCTTACCCTTACAATTCGGCTTCTTCGTCTCCTTTGTCAGTCTTGCTTTCAGTACTTGTGATGGTGCTGTTCTCATCTGCTGTTTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.0

Weight (kDa)

5.46

Isoelectric Point (pI)

64.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29150
prunus_persica Prupe.4G243900_v2.0.a1
rosa_rugosa Rorug05G0280000
rosa_samantha Rh5AG351200 Rh5BG363400 Rh5CG387800 Rh5DG378000
rosa_wichuraiana Rw5G033210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 156, 209, 215, 221
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 143, 206, 320, 426
AfiI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 333
AflIII ACRYGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 256, 331
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
Alw26I GTCTC 2 cut(s) 81, 405
AoxI GGCC 1 cut(s) 304
ApaI GGGCCC 1 cut(s) 308
AspS9I GGNCC 4 cut(s) 166, 304, 305, 336
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 2 cut(s) 166, 336
AxyI CCTNAGG 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 43
BccI CCATC 2 cut(s) 196, 427
BciT130I CCWGG 2 cut(s) 258, 333
BciVI GTATCC 1 cut(s) 284
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 81, 405
BfaI CTAG 2 cut(s) 108, 234
BfuI GTATCC 1 cut(s) 284
BglII AGATCT 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 3 cut(s) 258, 303, 333
Bme18I GGWCC 2 cut(s) 166, 336
BmgT120I GGNCC 4 cut(s) 166, 304, 305, 336
BmiI GGNNCC 4 cut(s) 167, 168, 306, 337
BmrFI CCNGG 3 cut(s) 258, 303, 333
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 105, 315
BpuMI CCSGG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 256, 332
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 161, 162, 333
Bse21I CCTNAGG 1 cut(s) 285
BseBI CCWGG 2 cut(s) 258, 333
BseDI CCNNGG 2 cut(s) 256, 332
BseLI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 333
BseMII CTCAG 2 cut(s) 299, 329
BseRI GAGGAG 6 cut(s) 360, 363, 366, 369, 372, 375
BseSI GKGCMC 1 cut(s) 308
BshFI GGCC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 198, 302
BslFI GGGAC 3 cut(s) 179, 237, 349
BslI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 333
BsmAI GTCTC 2 cut(s) 81, 405
BsmBI CGTCTC 2 cut(s) 81, 405
BsmFI GGGAC 3 cut(s) 179, 237, 349
BsnI GGCC 1 cut(s) 306
Bsp120I GGGCCC 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 4 cut(s) 156, 209, 215, 221
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 298, 328
BspLI GGNNCC 4 cut(s) 167, 168, 306, 337
BssECI CCNNGG 2 cut(s) 256, 332
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 258, 333
Bst4CI ACNGT 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 285, 315
BstENI CCTNNNNNAGG 1 cut(s) 156
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 81, 405
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 126, 229
BstNI CCWGG 2 cut(s) 258, 333
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 256, 301, 331
BstSLI GKGCMC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 285
BsuI GTATCC 1 cut(s) 284
BsuRI GGCC 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 35, 275
Cfr13I GGNCC 4 cut(s) 166, 304, 305, 336
CseI GACGC 2 cut(s) 98, 109
Csp6I GTAC 4 cut(s) 142, 205, 319, 425
CviAII CATG 2 cut(s) 135, 147
CviJI RGCY 3 cut(s) 232, 306, 392
CviKI_1 RGCY 3 cut(s) 232, 306, 392
CviQI GTAC 4 cut(s) 142, 205, 319, 425
DdeI CTNAG 2 cut(s) 285, 315
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 166, 336
Eco81I CCTNAGG 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoO109I RGGNCCY 2 cut(s) 166, 336
EcoRII CCWGG 2 cut(s) 256, 331
EcoT38I GRGCYC 1 cut(s) 308
Esp3I CGTCTC 2 cut(s) 81, 405
FaeI CATG 2 cut(s) 138, 150
FaiI YATR 4 cut(s) 136, 148, 172, 369
FaqI GGGAC 3 cut(s) 179, 237, 349
FatI CATG 2 cut(s) 134, 146
FauI CCCGC 2 cut(s) 163, 216
FriOI GRGCYC 1 cut(s) 308
FspBI CTAG 2 cut(s) 108, 234
GsuI CTGGAG 2 cut(s) 105, 315
HaeIII GGCC 1 cut(s) 306
HapII CCGG 2 cut(s) 198, 302
HgaI GACGC 2 cut(s) 98, 109
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 138, 150
HinfI GANTC 1 cut(s) 310
HpaII CCGG 2 cut(s) 198, 302
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 229
HpyF3I CTNAG 2 cut(s) 285, 315
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 138, 150
KflI GGGWCCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 9 cut(s) 69, 144, 211, 243, 270, 272, 315, 318, 345
MaeI CTAG 2 cut(s) 108, 234
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 3 cut(s) 43, 93, 387
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 2 cut(s) 115, 385
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 1 cut(s) 463
MspI CCGG 2 cut(s) 198, 302
MspR9I CCNGG 3 cut(s) 258, 303, 333
MvaI CCWGG 2 cut(s) 258, 333
MwoI GCNNNNNNNGC 2 cut(s) 126, 229
NciI CCSGG 1 cut(s) 303
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 138, 150
NlaIV GGNNCC 4 cut(s) 167, 168, 306, 337
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PfeI GAWTC 1 cut(s) 310
PpuMI RGGWCCY 2 cut(s) 166, 336
PscI ACATGT 1 cut(s) 134
Psp5II RGGWCCY 2 cut(s) 166, 336
Psp6I CCWGG 2 cut(s) 256, 331
PspGI CCWGG 2 cut(s) 256, 331
PspN4I GGNNCC 4 cut(s) 167, 168, 306, 337
PspOMI GGGCCC 1 cut(s) 304
PspPI GGNCC 4 cut(s) 166, 304, 305, 336
PspPPI RGGWCCY 2 cut(s) 166, 336
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 4 cut(s) 143, 206, 320, 426
RsaNI GTAC 4 cut(s) 142, 205, 319, 425
SaqAI TTAA 1 cut(s) 463
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 4 cut(s) 166, 304, 305, 336
ScaI AGTACT 1 cut(s) 426
ScrFI CCNGG 3 cut(s) 258, 303, 333
SduI GDGCHC 1 cut(s) 308
SetI ASST 6 cut(s) 63, 100, 184, 262, 324, 341
SinI GGWCC 2 cut(s) 166, 336
Sse9I AATT 2 cut(s) 115, 385
SsiI CCGC 4 cut(s) 156, 209, 215, 221
SspMI CTAG 2 cut(s) 108, 234
StyD4I CCNGG 3 cut(s) 256, 301, 331
TaaI ACNGT 1 cut(s) 39
TasI AATT 2 cut(s) 115, 385
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 1 cut(s) 463
Tru9I TTAA 1 cut(s) 463
TscAI CASTG 2 cut(s) 42, 275
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 2 cut(s) 42, 275
VpaK11BI GGWCC 2 cut(s) 166, 336
XagI CCTNNNNNAGG 1 cut(s) 156
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 108, 234
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.