Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014989

Physical Location & Seq

Genomic Coordinates Reverse (-)

24322951 .. 24325572

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTCCTCCTTTTCTCTCTTTCATTCTTTTGTTTCTGATAAATGCTGCTTCGAGTTCAGCTCAGGGTCCACCCTCACCTGGATACTACCCAAGTTCAAAAATTAGGTCCATGGGGTTTGATCAGGGTTACAGAAACCTTTGGGGTCCTCAGCACCAAAACGAAGACCAGGGCGGTTTAAGCATCTGGCTTGACAGAAGCTCTGGAAGTGGGTTCAAGTCAGTTCGTCCATATGGCTCTGGGTACTTTGGTGCAGCCATCAAGGTTCAGAGCGGTTACACTGCAGGAGTGATTACTTCATTTTACCTCTCGAACAATGAACAACACCAGACGGATCACGACGAGATCGATATCGAGTTCTTGGGGACGACTCCTGATAAGCCTTATGTTCTGCAAACCAATGTGTGGACTAAAGGAAGCGGAGATGGGAATAGACTTATTGGGAGGGAGCACAGGTTCCATCTCTGGTTTGATCCAACTCATGACTATCACAACTATGCTATAGTGTATAACCCAACTGAGATCATATTCATGGTGGATGATGTGCCGATAAGAAGGTACCCAAGGAAGAGCGACGCCACATTCCCATTGAGGCCGATGTGGGTGTACGGATCCATATGGGATGCATCATCATGGGCCACTGAGAATGGAAAATACAAAGCCGACTACAACTACCAACCATTCATTGGTAGGTATAAAGACTTCAAACTAGGCCCGGGCTCCGCCGCCTCGCCATCCGGCACAACCGGCATGAGCCGACAGCAATACACGGCCATGGATTGGGTGCAAAGGAACTACAAGGTCTACGACTACTGCACCGACTCCAAGCGAGACCATTCGCAGACGCCCGAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016787 GO:0016798 GO:0016998 GO:0033946 GO:0043170 GO:0044036 GO:0044237 GO:0044248 GO:0044260 GO:0052736 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

286

Amino Acids

32.38

Weight (kDa)

6.7

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	41 - 224	2.4e-54	Glycosyl hydrolases family 16
XET_C	PF06955	249 - 285	1.9e-13	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44990
fragaria_vesca	FvH4_3g30850
malus_domestica	MD11G1146700.v1.1
prunus_persica	Prupe.6G110300_v2.0.a1
pyrus_communis	pycom11g11970
rosa_chinensis	RchiOBHm_Chr5g0057091
rosa_laevigata	RLG00000035150
rosa_multiflora	Rmu_co8466263.1_g000001 Rmu_sc0001334.1_g000001 Rmu_sc0007667.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023110
rosa_rugosa	Rorug05G0305700
rosa_samantha	Rh5AG375000 Rh5BG386000 Rh5CG409500
rosa_wichuraiana	Rw5G035300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	558
AccB7I	CCANNNNNTGG	3 cut(s)	405, 686, 780
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	804
AciI	CCGC	5 cut(s)	174, 273, 420, 723, 726
AclWI	GGATC	4 cut(s)	342, 467, 606, 619
AcoI	YGGCCR	1 cut(s)	771
AcyI	GRCGYC	2 cut(s)	576, 845
AfaI	GTAC	3 cut(s)	245, 560, 608
AfiI	CCNNNNNNNGG	4 cut(s)	80, 405, 686, 780
AgsI	TTSAA	3 cut(s)	99, 217, 706
AjnI	CCWGG	2 cut(s)	79, 168
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	2 cut(s)	62, 201
AluI	AGCT	2 cut(s)	62, 201
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	825
AlwI	GGATC	4 cut(s)	342, 467, 606, 619
Ama87I	CYCGRG	2 cut(s)	715, 848
AoxI	GGCC	4 cut(s)	593, 636, 712, 771
ApeKI	GCWGC	2 cut(s)	47, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
Asp718I	GGTACC	1 cut(s)	558
AspS9I	GGNCC	5 cut(s)	68, 108, 146, 636, 713
AsuC2I	CCSGG	2 cut(s)	716, 717
AsuHPI	GGTGA	1 cut(s)	69
AvaI	CYCGRG	2 cut(s)	715, 848
AvaII	GGWCC	3 cut(s)	68, 108, 146
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BamHI	GGATCC	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	722
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	453
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	34, 266
BccI	CCATC	4 cut(s)	266, 419, 468, 742
BceAI	ACGGC	1 cut(s)	786
BciT130I	CCWGG	2 cut(s)	81, 170
BciVI	GTATCC	1 cut(s)	77
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	2 cut(s)	716, 717
BcoDI	GTCTC	1 cut(s)	825
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	2 cut(s)	282, 501
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	3 cut(s)	48, 255, 726
BlsI	GCNGC	3 cut(s)	49, 256, 727
Bme1390I	CCNGG	4 cut(s)	81, 170, 716, 717
Bme18I	GGWCC	3 cut(s)	68, 108, 146
BmeT110I	CYCGRG	2 cut(s)	715, 848
BmgT120I	GGNCC	5 cut(s)	68, 108, 146, 636, 713
BmiI	GGNNCC	7 cut(s)	6, 69, 147, 458, 560, 613, 721
BmrFI	CCNGG	4 cut(s)	81, 170, 716, 717
BmsI	GCATC	3 cut(s)	192, 613, 635
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
Bpu10I	CCTNAGC	2 cut(s)	63, 150
BpuMI	CCSGG	2 cut(s)	716, 717
Bsa29I	ATCGAT	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	350
BsaHI	GRCGYC	2 cut(s)	576, 845
BsaI	GGTCTC	1 cut(s)	825
BsaJI	CCNNGG	5 cut(s)	111, 169, 563, 715, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 405, 686, 780
Bse118I	RCCGGY	1 cut(s)	746
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	2 cut(s)	81, 170
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	5 cut(s)	111, 169, 563, 715, 774
BseGI	GGATG	3 cut(s)	544, 628, 734
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	4 cut(s)	80, 405, 686, 780
BseMII	CTCAG	4 cut(s)	77, 164, 510, 633
BseXI	GCAGC	2 cut(s)	34, 266
BsgI	GTGCAG	2 cut(s)	273, 799
BshFI	GGCC	4 cut(s)	595, 638, 714, 773
BshNI	GGYRCC	1 cut(s)	558
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	2 cut(s)	715, 848
BsiSI	CCGG	3 cut(s)	716, 738, 747
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	4 cut(s)	80, 405, 686, 780
BsmAI	GTCTC	1 cut(s)	825
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	4 cut(s)	595, 638, 714, 773
Bso31I	GGTCTC	1 cut(s)	825
BsoBI	CYCGRG	2 cut(s)	715, 848
Bsp1286I	GDGCHC	2 cut(s)	453, 722
Bsp143I	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
Bsp19I	CCATGG	2 cut(s)	111, 774
BspACI	CCGC	5 cut(s)	174, 273, 420, 723, 726
BspANI	GGCC	4 cut(s)	595, 638, 714, 773
BspCNI	CTCAG	4 cut(s)	76, 163, 511, 634
BspDI	ATCGAT	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	7 cut(s)	6, 69, 147, 458, 560, 613, 721
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	4 cut(s)	342, 467, 606, 619
BspQI	GCTCTTC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	825
BsrBI	CCGCTC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	5 cut(s)	111, 169, 563, 715, 774
BssMI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
BssNI	GRCGYC	2 cut(s)	576, 845
BssT1I	CCWWGG	3 cut(s)	111, 563, 774
Bst2UI	CCWGG	2 cut(s)	81, 170
Bst6I	CTCTTC	1 cut(s)	563
BstACI	GRCGYC	2 cut(s)	576, 845
BstDEI	CTNAG	4 cut(s)	63, 150, 519, 642
BstDSI	CCRYGG	2 cut(s)	111, 774
BstF5I	GGATG	3 cut(s)	544, 628, 734
BstKTI	GATC	6 cut(s)	124, 337, 348, 475, 525, 614
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 747
BstNI	CCWGG	2 cut(s)	81, 170
BstSCI	CCNGG	4 cut(s)	79, 168, 714, 715
BstSFI	CTRYAG	2 cut(s)	282, 501
BstV1I	GCAGC	2 cut(s)	34, 266
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
Bsu15I	ATCGAT	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	4 cut(s)	595, 638, 714, 773
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	2 cut(s)	111, 774
BtsCI	GGATG	3 cut(s)	544, 628, 734
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 639
CciI	TCATGA	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	5 cut(s)	68, 108, 146, 636, 713
Cfr9I	CCCGGG	1 cut(s)	715
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	2 cut(s)	584, 853
Csp6I	GTAC	3 cut(s)	244, 559, 607
CviAII	CATG	6 cut(s)	112, 482, 532, 633, 751, 775
CviQI	GTAC	3 cut(s)	244, 559, 607
DdeI	CTNAG	4 cut(s)	63, 150, 519, 642
DpnI	GATC	6 cut(s)	123, 336, 347, 474, 524, 613
DpnII	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
EciI	GGCGGA	1 cut(s)	712
Eco130I	CCWWGG	3 cut(s)	111, 563, 774
Eco24I	GRGCYC	1 cut(s)	722
Eco31I	GGTCTC	1 cut(s)	825
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	3 cut(s)	68, 108, 146
Eco88I	CYCGRG	2 cut(s)	715, 848
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	79, 168
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	3 cut(s)	111, 563, 774
EcoT22I	ATGCAT	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	722
ErhI	CCWWGG	3 cut(s)	111, 563, 774
FaeI	CATG	6 cut(s)	115, 485, 535, 636, 754, 778
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	6 cut(s)	111, 481, 531, 632, 750, 774
FauNDI	CATATG	2 cut(s)	232, 617
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	804
Fnu4HI	GCNGC	3 cut(s)	48, 255, 726
FokI	GGATG	3 cut(s)	551, 635, 721
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	3 cut(s)	48, 255, 726
FspBI	CTAG	1 cut(s)	710
GluI	GCNGC	3 cut(s)	48, 255, 726
HaeIII	GGCC	4 cut(s)	595, 638, 714, 773
HapII	CCGG	3 cut(s)	716, 738, 747
HgaI	GACGC	2 cut(s)	584, 853
Hin1I	GRCGYC	2 cut(s)	576, 845
Hin1II	CATG	6 cut(s)	115, 485, 535, 636, 754, 778
HinfI	GANTC	2 cut(s)	370, 821
HpaII	CCGG	3 cut(s)	716, 738, 747
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	4 cut(s)	71, 408, 607, 805
Hpy188I	TCNGA	2 cut(s)	39, 270
Hpy188III	TCNNGA	5 cut(s)	204, 310, 338, 374, 482
Hpy8I	GTNNAC	4 cut(s)	71, 408, 607, 805
Hpy99I	CGWCG	2 cut(s)	344, 578
HpyAV	CCTTC	1 cut(s)	549
HpyCH4V	TGCA	6 cut(s)	254, 284, 394, 626, 787, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 747
HpyF3I	CTNAG	4 cut(s)	63, 150, 519, 642
Hsp92I	GRCGYC	2 cut(s)	576, 845
Hsp92II	CATG	6 cut(s)	115, 485, 535, 636, 754, 778
KpnI	GGTACC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	3 cut(s)	10, 448, 725
Lsp1109I	GCAGC	2 cut(s)	34, 266
LweI	GCATC	3 cut(s)	192, 613, 635
MaeI	CTAG	1 cut(s)	710
MaeIII	GTNAC	2 cut(s)	128, 275
MalI	GATC	6 cut(s)	123, 336, 347, 474, 524, 613
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
MboII	GAAGA	2 cut(s)	176, 580
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	453, 722
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	364, 815
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	7 cut(s)	18, 85, 159, 317, 438, 585, 739
Mph1103I	ATGCAT	1 cut(s)	628
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	4 cut(s)	495, 530, 631, 773
MspI	CCGG	3 cut(s)	716, 738, 747
MspR9I	CCNGG	4 cut(s)	81, 170, 716, 717
MvaI	CCWGG	2 cut(s)	81, 170
MwoI	GCNNNNNNNGC	2 cut(s)	180, 747
NciI	CCSGG	2 cut(s)	716, 717
NcoI	CCATGG	2 cut(s)	111, 774
NdeI	CATATG	2 cut(s)	232, 617
NdeII	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
NlaIII	CATG	6 cut(s)	115, 485, 535, 636, 754, 778
NlaIV	GGNNCC	7 cut(s)	6, 69, 147, 458, 560, 613, 721
NsiI	ATGCAT	1 cut(s)	628
PagI	TCATGA	1 cut(s)	481
PciSI	GCTCTTC	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PflMI	CCANNNNNTGG	3 cut(s)	405, 686, 780
PkrI	GCNGC	3 cut(s)	49, 256, 727
PleI	GAGTC	2 cut(s)	364, 815
PpsI	GAGTC	2 cut(s)	364, 815
PpuMI	RGGWCCY	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	79, 168
PspGI	CCWGG	2 cut(s)	79, 168
PspN4I	GGNNCC	7 cut(s)	6, 69, 147, 458, 560, 613, 721
PspPI	GGNCC	5 cut(s)	68, 108, 146, 636, 713
PspPPI	RGGWCCY	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	3 cut(s)	245, 560, 608
RsaNI	GTAC	3 cut(s)	244, 559, 607
RseI	CAYNNNNRTG	4 cut(s)	495, 530, 631, 773
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	3 cut(s)	48, 255, 726
Sau3AI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
Sau96I	GGNCC	5 cut(s)	68, 108, 146, 636, 713
SchI	GAGTC	2 cut(s)	364, 815
ScrFI	CCNGG	4 cut(s)	81, 170, 716, 717
SduI	GDGCHC	2 cut(s)	453, 722
SfaNI	GCATC	3 cut(s)	192, 613, 635
SfcI	CTRYAG	2 cut(s)	282, 501
SinI	GGWCC	3 cut(s)	68, 108, 146
SmaI	CCCGGG	1 cut(s)	717
SmiMI	CAYNNNNRTG	4 cut(s)	495, 530, 631, 773
SrfI	GCCCGGGC	1 cut(s)	717
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	5 cut(s)	174, 273, 420, 723, 726
SspMI	CTAG	1 cut(s)	710
StyD4I	CCNGG	4 cut(s)	79, 168, 714, 715
StyI	CCWWGG	3 cut(s)	111, 563, 774
TaqI	TCGA	4 cut(s)	53, 311, 348, 354
TasI	AATT	1 cut(s)	102
TauI	GCSGC	1 cut(s)	728
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	2 cut(s)	286, 646
TseI	GCWGC	2 cut(s)	47, 254
TspDTI	ATGAA	5 cut(s)	13, 288, 333, 520, 673
TspGWI	ACGGA	2 cut(s)	347, 624
TspMI	CCCGGG	1 cut(s)	715
TspRI	CASTG	2 cut(s)	286, 646
Van91I	CCANNNNNTGG	3 cut(s)	405, 686, 780
VpaK11BI	GGWCC	3 cut(s)	68, 108, 146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmaI	CCCGGG	1 cut(s)	715
XmiI	GTMKAC	1 cut(s)	804
XspI	CTAG	1 cut(s)	710
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.