Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001334.1

Orthogroup ID

OG0014989

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1577

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001334.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 653 bp

atggctcctccttttctctctttaattcttttattcctgataaaggttgcttcgagttcagctcagggtccaccctcacctggatactacccaagttccagagttaggtcaatagggtttgatcagggttacagaaacctttggggtcctgagcaccaaaacgaagaccagggcggtataagcatttggcttgacaaaagctcaggaagtgggttcaagtcagttcgttcatatggttctgggtactttggtgcagccatcaaggttcagaccggctacactgccggagtgattacatcattctatctgtcgaacaatgaagaacaccctggggatcatgacgagatcgatatcgagttcttgggaacgactcttgataagccttatgttctgcaaaccaatgtgtggactaaaggaagcggagatgggaacaaccttattgggagggagcacaggttccatctctggtttgatccaacacatgactttcacaactatgctatagtgtataaccccagtgagatcatattcctggtggacgatgtgccgataagaaggtacgcaaggaagagcgatgccacattcccattgaggccgatgtgggtgtacggatccatatgggatgcatcatcatgggccacagaggaaggaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016787 GO:0016798 GO:0016998 GO:0033946 GO:0043170 GO:0044036 GO:0044237 GO:0044248 GO:0044260 GO:0052736 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

217

Amino Acids

24.32

Weight (kDa)

5.42

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44990
fragaria_vesca	FvH4_3g30850
malus_domestica	MD11G1146700.v1.1
prunus_persica	Prupe.6G110300_v2.0.a1
pyrus_communis	pycom11g11970
rosa_chinensis	RchiOBHm_Chr5g0057091
rosa_laevigata	RLG00000035150
rosa_multiflora	Rmu_co8466263.1_g000001 Rmu_sc0001334.1_g000001 Rmu_sc0007667.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023110
rosa_rugosa	Rorug05G0305700
rosa_samantha	Rh5AG375000 Rh5BG386000 Rh5CG409500
rosa_wichuraiana	Rw5G035300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	405
AciI	CCGC	2 cut(s)	174, 420
AclWI	GGATC	4 cut(s)	342, 467, 606, 619
AfaI	GTAC	3 cut(s)	245, 560, 608
AfiI	CCNNNNNNNGG	4 cut(s)	43, 80, 105, 405
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	4 cut(s)	79, 168, 328, 531
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	2 cut(s)	62, 201
AluI	AGCT	2 cut(s)	62, 201
Alw21I	GWGCWC	2 cut(s)	156, 453
AlwI	GGATC	4 cut(s)	342, 467, 606, 619
AoxI	GGCC	2 cut(s)	593, 636
ApeKI	GCWGC	1 cut(s)	254
AspS9I	GGNCC	3 cut(s)	68, 146, 636
AsuHPI	GGTGA	1 cut(s)	69
AvaII	GGWCC	2 cut(s)	68, 146
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BamHI	GGATCC	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	156, 453
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	3 cut(s)	266, 419, 468
BciT130I	CCWGG	4 cut(s)	81, 170, 330, 533
BciVI	GTATCC	1 cut(s)	77
BclI	TGATCA	1 cut(s)	121
BfmI	CTRYAG	1 cut(s)	501
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	4 cut(s)	81, 170, 330, 533
Bme18I	GGWCC	2 cut(s)	68, 146
BmgT120I	GGNCC	3 cut(s)	68, 146, 636
BmiI	GGNNCC	5 cut(s)	6, 69, 147, 458, 613
BmrFI	CCNGG	4 cut(s)	81, 170, 330, 533
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	3 cut(s)	565, 613, 635
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
Bpu10I	CCTNAGC	3 cut(s)	63, 150, 202
Bsa29I	ATCGAT	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	169, 328, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 80, 105, 405
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	4 cut(s)	81, 170, 330, 533
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	3 cut(s)	169, 328, 329
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	4 cut(s)	43, 80, 105, 405
BseMII	CTCAG	3 cut(s)	77, 141, 216
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	595, 638
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	156, 453
BsiSI	CCGG	2 cut(s)	273, 285
BslI	CCNNNNNNNGG	4 cut(s)	43, 80, 105, 405
BsnI	GGCC	2 cut(s)	595, 638
Bsp1286I	GDGCHC	2 cut(s)	156, 453
Bsp143I	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
BspACI	CCGC	2 cut(s)	174, 420
BspANI	GGCC	2 cut(s)	595, 638
BspCNI	CTCAG	3 cut(s)	76, 142, 215
BspDI	ATCGAT	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	5 cut(s)	6, 69, 147, 458, 613
BspPI	GGATC	4 cut(s)	342, 467, 606, 619
BspQI	GCTCTTC	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	3 cut(s)	169, 328, 329
BssMI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
Bst2UI	CCWGG	4 cut(s)	81, 170, 330, 533
Bst6I	CTCTTC	1 cut(s)	563
BstDEI	CTNAG	3 cut(s)	63, 150, 202
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	6 cut(s)	124, 337, 348, 475, 525, 614
BstMBI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	4 cut(s)	81, 170, 330, 533
BstSCI	CCNGG	4 cut(s)	79, 168, 328, 531
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
Bsu15I	ATCGAT	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	595, 638
BsuTUI	ATCGAT	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	628
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 523
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	3 cut(s)	68, 146, 636
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	3 cut(s)	244, 559, 607
CviAII	CATG	3 cut(s)	338, 482, 633
CviJI	RGCY	9 cut(s)	5, 62, 190, 201, 257, 276, 382, 595, 638
CviKI_1	RGCY	9 cut(s)	5, 62, 190, 201, 257, 276, 382, 595, 638
CviQI	GTAC	3 cut(s)	244, 559, 607
DdeI	CTNAG	3 cut(s)	63, 150, 202
DpnI	GATC	6 cut(s)	123, 336, 347, 474, 524, 613
DpnII	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	68, 146
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	4 cut(s)	79, 168, 328, 531
EcoRV	GATATC	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	628
FaeI	CATG	3 cut(s)	341, 485, 636
FatI	CATG	3 cut(s)	337, 481, 632
FauNDI	CATATG	2 cut(s)	232, 617
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	595, 638
HapII	CCGG	2 cut(s)	273, 285
Hin1II	CATG	3 cut(s)	341, 485, 636
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	2 cut(s)	273, 285
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	4 cut(s)	71, 408, 538, 607
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	6 cut(s)	37, 99, 149, 204, 338, 374
Hpy8I	GTNNAC	4 cut(s)	71, 408, 538, 607
HpyAV	CCTTC	2 cut(s)	549, 641
HpyCH4V	TGCA	3 cut(s)	254, 394, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	3 cut(s)	63, 150, 202
Hsp92II	CATG	3 cut(s)	341, 485, 636
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	2 cut(s)	10, 448
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	3 cut(s)	565, 613, 635
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	6 cut(s)	123, 336, 347, 474, 524, 613
MboI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
MboII	GAAGA	3 cut(s)	176, 332, 580
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	156, 453
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	5 cut(s)	18, 85, 438, 585, 637
Mph1103I	ATGCAT	1 cut(s)	628
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	2 cut(s)	495, 631
MspI	CCGG	2 cut(s)	273, 285
MspR9I	CCNGG	4 cut(s)	81, 170, 330, 533
MvaI	CCWGG	4 cut(s)	81, 170, 330, 533
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeI	CATATG	2 cut(s)	232, 617
NdeII	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
NlaIII	CATG	3 cut(s)	341, 485, 636
NlaIV	GGNNCC	5 cut(s)	6, 69, 147, 458, 613
NsiI	ATGCAT	1 cut(s)	628
PagI	TCATGA	1 cut(s)	337
PasI	CCCWGGG	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	563
PflMI	CCANNNNNTGG	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	4 cut(s)	79, 168, 328, 531
PspGI	CCWGG	4 cut(s)	79, 168, 328, 531
PspN4I	GGNNCC	5 cut(s)	6, 69, 147, 458, 613
PspPI	GGNCC	3 cut(s)	68, 146, 636
PspPPI	RGGWCCY	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	3 cut(s)	245, 560, 608
RsaNI	GTAC	3 cut(s)	244, 559, 607
RseI	CAYNNNNRTG	2 cut(s)	495, 631
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
Sau96I	GGNCC	3 cut(s)	68, 146, 636
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	4 cut(s)	81, 170, 330, 533
SduI	GDGCHC	2 cut(s)	156, 453
SfaNI	GCATC	3 cut(s)	565, 613, 635
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	2 cut(s)	68, 146
SmiMI	CAYNNNNRTG	2 cut(s)	495, 631
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	174, 420
StyD4I	CCNGG	4 cut(s)	79, 168, 328, 531
TaqI	TCGA	4 cut(s)	53, 311, 348, 354
TasI	AATT	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	2 cut(s)	286, 523
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	219, 333
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	2 cut(s)	286, 523
Van91I	CCANNNNNTGG	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	68, 146
XagI	CCTNNNNNAGG	1 cut(s)	41
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.