Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014989

Physical Location & Seq

Genomic Coordinates Forward (+)

13791832 .. 13794410

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1146700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCTCCTCTCATCTTCCTAATCCTTCTCTTCCTAATGATTTCTTCAAGTATTGCTCAGGGTCCCCCCTCACCTGGCTATAACCCTAGTTCTAAAATTAGCACTCTAGGGTTTTATCAGGGTTTTAGAACCCTTTGGGGTCCTCAACATCAAAATTTAGACCATGGTACTTTAACACTCTGGCTTGACACTAGCTCAGGAAGTGGGTTCAAGTCACTTCATCCGTACCGTTCTGGATATTTTGGTGCAGCCGTTAAGCTCCAACCTGGTTACACTGCTGGAGTAATTACTTCATTCTATCTCTCTAACAACGAAGAACATCCGGGGAACCACGATGAAATCGATATTGAGTTCCTTGGTACAACTCCTGGTAAGCCCTATACTCTGCAAACCAATGTGTACATGAGAGGAAGTGGAGATGGAAACATCATTGGAAGAGAGAAGAGATTTCATCTCTGGTTTGATCCAACACAGGACTTTCACAACTACGCTATAGTATGGAACCCTACTGAGATCATATTCCTGGTGGATGATGTGCCCATAAGAAGGTACCAGAGAGAGAGTTATGCCACATTTCCATTGAGGCCGATGTGGGCATATGCATCGATATGGGATGCATCATCATGGGCCACAGAGGATGGAAAATACAAAGCCGACTACAAGTACCAACCATTTATTGGCAAGTACAACAATTTCAAACTTGGTGGGTGTAAATCCGATAGCCCTACGTCATGCCGACCGCCCTCCGCCTCACCGTCCGGCTCATCGGGGCTTAGTCAGCAGCAGTACTCGGCCATGGAGTGGGTGCAGCGGAACTACTTGGTCTATGACTATTGCTATGATCCAAAGAGAGACCATACACTAACACCCGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016787 GO:0016798 GO:0016998 GO:0033946 GO:0043170 GO:0044036 GO:0044237 GO:0044248 GO:0044260 GO:0052736 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

293

Amino Acids

33.09

Weight (kDa)

6.44

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	39 - 221	8.5e-57	Glycosyl hydrolases family 16
XET_C	PF06955	255 - 292	6e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44990
fragaria_vesca	FvH4_3g30850
malus_domestica	MD11G1146700.v1.1
prunus_persica	Prupe.6G110300_v2.0.a1
pyrus_communis	pycom11g11970
rosa_chinensis	RchiOBHm_Chr5g0057091
rosa_laevigata	RLG00000035150
rosa_multiflora	Rmu_co8466263.1_g000001 Rmu_sc0001334.1_g000001 Rmu_sc0007667.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023110
rosa_rugosa	Rorug05G0305700
rosa_samantha	Rh5AG375000 Rh5BG386000 Rh5CG409500
rosa_wichuraiana	Rw5G035300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	549
AccB1I	GGYRCC	1 cut(s)	549
AccB7I	CCANNNNNTGG	2 cut(s)	677, 801
AciI	CCGC	3 cut(s)	740, 747, 811
AclWI	GGATC	2 cut(s)	458, 836
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	8 cut(s)	169, 227, 361, 401, 551, 665, 686, 788
AfiI	CCNNNNNNNGG	4 cut(s)	74, 546, 677, 801
AgsI	TTSAA	3 cut(s)	48, 211, 697
AjnI	CCWGG	4 cut(s)	73, 265, 367, 522
AluBI	AGCT	2 cut(s)	195, 259
AluI	AGCT	2 cut(s)	195, 259
Alw26I	GTCTC	1 cut(s)	846
AlwI	GGATC	2 cut(s)	458, 836
AoxI	GGCC	3 cut(s)	584, 627, 792
ApeKI	GCWGC	3 cut(s)	248, 781, 808
ApoI	RAATTY	1 cut(s)	154
Asp718I	GGTACC	1 cut(s)	549
AspS9I	GGNCC	3 cut(s)	62, 140, 627
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	63, 744
AvaII	GGWCC	2 cut(s)	62, 140
BaeGI	GKGCMC	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	260, 793, 820
BccI	CCATC	2 cut(s)	413, 632
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BciT130I	CCWGG	4 cut(s)	75, 267, 369, 524
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	846
BfaI	CTAG	3 cut(s)	87, 107, 192
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	3 cut(s)	249, 782, 809
BlsI	GCNGC	3 cut(s)	250, 783, 810
BmcAI	AGTACT	1 cut(s)	788
Bme1390I	CCNGG	5 cut(s)	75, 267, 324, 369, 524
Bme18I	GGWCC	2 cut(s)	62, 140
BmgT120I	GGNCC	3 cut(s)	62, 140, 627
BmiI	GGNNCC	7 cut(s)	6, 63, 64, 141, 329, 503, 551
BmrFI	CCNGG	5 cut(s)	75, 267, 324, 369, 524
BmsI	GCATC	3 cut(s)	604, 611, 626
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	2 cut(s)	57, 196
BpuMI	CCSGG	1 cut(s)	324
Bsa29I	ATCGAT	2 cut(s)	342, 605
BsaI	GGTCTC	1 cut(s)	846
BsaJI	CCNNGG	4 cut(s)	163, 323, 355, 795
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 546, 677, 801
BseBI	CCWGG	4 cut(s)	75, 267, 369, 524
BseCI	ATCGAT	2 cut(s)	342, 605
BseDI	CCNNGG	4 cut(s)	163, 323, 355, 795
BseGI	GGATG	5 cut(s)	220, 319, 535, 619, 643
BseLI	CCNNNNNNNGG	4 cut(s)	74, 546, 677, 801
BseMII	CTCAG	3 cut(s)	71, 210, 501
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	3 cut(s)	260, 793, 820
BsgI	GTGCAG	2 cut(s)	267, 827
Bsh1285I	CGRYCG	1 cut(s)	740
BshFI	GGCC	3 cut(s)	586, 629, 794
BshNI	GGYRCC	1 cut(s)	549
BshVI	ATCGAT	2 cut(s)	342, 605
BsiEI	CGRYCG	1 cut(s)	740
BsiSI	CCGG	2 cut(s)	323, 759
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	4 cut(s)	74, 546, 677, 801
BsmAI	GTCTC	1 cut(s)	846
BsmFI	GGGAC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	878
BsnI	GGCC	3 cut(s)	586, 629, 794
Bso31I	GGTCTC	1 cut(s)	846
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	463, 513, 841
Bsp19I	CCATGG	2 cut(s)	163, 795
BspACI	CCGC	3 cut(s)	740, 747, 811
BspANI	GGCC	3 cut(s)	586, 629, 794
BspCNI	CTCAG	3 cut(s)	70, 209, 502
BspDI	ATCGAT	2 cut(s)	342, 605
BspLI	GGNNCC	7 cut(s)	6, 63, 64, 141, 329, 503, 551
BspPI	GGATC	2 cut(s)	458, 836
BspT107I	GGYRCC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	846
BsrGI	TGTACA	1 cut(s)	399
BssECI	CCNNGG	4 cut(s)	163, 323, 355, 795
BssMI	GATC	3 cut(s)	463, 513, 841
BssT1I	CCWWGG	3 cut(s)	163, 355, 795
Bst2UI	CCWGG	4 cut(s)	75, 267, 369, 524
Bst4CI	ACNGT	2 cut(s)	230, 756
Bst6I	CTCTTC	3 cut(s)	35, 430, 437
BstAUI	TGTACA	1 cut(s)	399
BstDEI	CTNAG	4 cut(s)	57, 196, 510, 773
BstDSI	CCRYGG	2 cut(s)	163, 795
BstF5I	GGATG	5 cut(s)	220, 319, 535, 619, 643
BstKTI	GATC	3 cut(s)	466, 516, 844
BstMAI	GTCTC	1 cut(s)	846
BstMBI	GATC	3 cut(s)	463, 513, 841
BstMCI	CGRYCG	1 cut(s)	740
BstMWI	GCNNNNNNNGC	1 cut(s)	778
BstNI	CCWGG	4 cut(s)	75, 267, 369, 524
BstSCI	CCNGG	5 cut(s)	73, 265, 322, 367, 522
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	540
BstV1I	GCAGC	3 cut(s)	260, 793, 820
Bsu15I	ATCGAT	2 cut(s)	342, 605
BsuRI	GGCC	3 cut(s)	586, 629, 794
BsuTUI	ATCGAT	2 cut(s)	342, 605
BtgI	CCRYGG	2 cut(s)	163, 795
BtsCI	GGATG	5 cut(s)	220, 319, 535, 619, 643
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cfr13I	GGNCC	3 cut(s)	62, 140, 627
ClaI	ATCGAT	2 cut(s)	342, 605
CsiI	ACCWGGT	1 cut(s)	265
Csp6I	GTAC	8 cut(s)	168, 226, 360, 400, 550, 664, 685, 787
CspCI	CAANNNNNGTGG	2 cut(s)	685, 720
CviAII	CATG	5 cut(s)	164, 403, 624, 732, 796
CviQI	GTAC	8 cut(s)	168, 226, 360, 400, 550, 664, 685, 787
DdeI	CTNAG	4 cut(s)	57, 196, 510, 773
DpnI	GATC	3 cut(s)	465, 515, 843
DpnII	GATC	3 cut(s)	463, 513, 841
EaeI	YGGCCR	1 cut(s)	792
Eam1104I	CTCTTC	3 cut(s)	35, 430, 437
EarI	CTCTTC	3 cut(s)	35, 430, 437
EciI	GGCGGA	1 cut(s)	736
Eco130I	CCWWGG	3 cut(s)	163, 355, 795
Eco31I	GGTCTC	1 cut(s)	846
Eco47I	GGWCC	2 cut(s)	62, 140
EcoO109I	RGGNCCY	2 cut(s)	62, 140
EcoRII	CCWGG	4 cut(s)	73, 265, 367, 522
EcoT14I	CCWWGG	3 cut(s)	163, 355, 795
EcoT22I	ATGCAT	2 cut(s)	604, 619
ErhI	CCWWGG	3 cut(s)	163, 355, 795
FaeI	CATG	5 cut(s)	167, 406, 627, 735, 799
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	5 cut(s)	163, 402, 623, 731, 795
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	3 cut(s)	249, 782, 809
FokI	GGATG	5 cut(s)	207, 306, 542, 626, 650
Fsp4HI	GCNGC	3 cut(s)	249, 782, 809
FspBI	CTAG	3 cut(s)	87, 107, 192
GluI	GCNGC	3 cut(s)	249, 782, 809
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	586, 629, 794
HapII	CCGG	2 cut(s)	323, 759
Hin1II	CATG	5 cut(s)	167, 406, 627, 735, 799
HpaII	CCGG	2 cut(s)	323, 759
HphI	GGTGA	2 cut(s)	63, 744
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	718
Hpy188III	TCNNGA	2 cut(s)	198, 234
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	35, 540
HpyCH4III	ACNGT	2 cut(s)	230, 756
HpyCH4IV	ACGT	1 cut(s)	728
HpyCH4V	TGCA	5 cut(s)	248, 388, 602, 617, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	778
HpyF3I	CTNAG	4 cut(s)	57, 196, 510, 773
HpySE526I	ACGT	1 cut(s)	728
Hsp92II	CATG	5 cut(s)	167, 406, 627, 735, 799
KflI	GGGWCCC	1 cut(s)	62
KpnI	GGTACC	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	463, 513, 841
LmnI	GCTCC	2 cut(s)	10, 264
Lsp1109I	GCAGC	3 cut(s)	260, 793, 820
LweI	GCATC	3 cut(s)	604, 611, 626
MabI	ACCWGGT	1 cut(s)	265
MaeI	CTAG	3 cut(s)	87, 107, 192
MaeII	ACGT	1 cut(s)	728
MaeIII	GTNAC	2 cut(s)	213, 269
MalI	GATC	3 cut(s)	465, 515, 843
MboI	GATC	3 cut(s)	463, 513, 841
MboII	GAAGA	6 cut(s)	7, 22, 36, 326, 447, 454
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	4 cut(s)	96, 154, 285, 691
MmeI	TCCRAC	2 cut(s)	286, 491
MnlI	CCTC	8 cut(s)	18, 79, 153, 401, 576, 628, 754, 760
Mph1103I	ATGCAT	2 cut(s)	604, 619
MseI	TTAA	2 cut(s)	173, 255
MslI	CAYNNNNRTG	3 cut(s)	607, 622, 871
MspA1I	CMGCKG	1 cut(s)	811
MspI	CCGG	2 cut(s)	323, 759
MspR9I	CCNGG	5 cut(s)	75, 267, 324, 369, 524
Mva1269I	GAATGC	1 cut(s)	878
MvaI	CCWGG	4 cut(s)	75, 267, 369, 524
MwoI	GCNNNNNNNGC	1 cut(s)	778
NciI	CCSGG	1 cut(s)	324
NcoI	CCATGG	2 cut(s)	163, 795
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	3 cut(s)	463, 513, 841
NlaIII	CATG	5 cut(s)	167, 406, 627, 735, 799
NlaIV	GGNNCC	7 cut(s)	6, 63, 64, 141, 329, 503, 551
NmeAIII	GCCGAG	1 cut(s)	770
NmuCI	GTSAC	1 cut(s)	213
NsiI	ATGCAT	2 cut(s)	604, 619
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	878
PflMI	CCANNNNNTGG	2 cut(s)	677, 801
PkrI	GCNGC	3 cut(s)	250, 783, 810
PpuMI	RGGWCCY	2 cut(s)	62, 140
Psp5II	RGGWCCY	2 cut(s)	62, 140
Psp6I	CCWGG	4 cut(s)	73, 265, 367, 522
PspGI	CCWGG	4 cut(s)	73, 265, 367, 522
PspN4I	GGNNCC	7 cut(s)	6, 63, 64, 141, 329, 503, 551
PspPI	GGNCC	3 cut(s)	62, 140, 627
PspPPI	RGGWCCY	2 cut(s)	62, 140
RsaI	GTAC	8 cut(s)	169, 227, 361, 401, 551, 665, 686, 788
RsaNI	GTAC	8 cut(s)	168, 226, 360, 400, 550, 664, 685, 787
RseI	CAYNNNNRTG	3 cut(s)	607, 622, 871
SaqAI	TTAA	2 cut(s)	173, 255
SatI	GCNGC	3 cut(s)	249, 782, 809
Sau3AI	GATC	3 cut(s)	463, 513, 841
Sau96I	GGNCC	3 cut(s)	62, 140, 627
ScaI	AGTACT	1 cut(s)	788
ScrFI	CCNGG	5 cut(s)	75, 267, 324, 369, 524
SduI	GDGCHC	1 cut(s)	540
SetI	ASST	6 cut(s)	76, 197, 261, 268, 551, 731
SexAI	ACCWGGT	1 cut(s)	265
SfaNI	GCATC	3 cut(s)	604, 611, 626
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	2 cut(s)	62, 140
SmiMI	CAYNNNNRTG	3 cut(s)	607, 622, 871
Sse9I	AATT	4 cut(s)	96, 154, 285, 691
SsiI	CCGC	3 cut(s)	740, 747, 811
SspMI	CTAG	3 cut(s)	87, 107, 192
StyD4I	CCNGG	5 cut(s)	73, 265, 322, 367, 522
StyI	CCWWGG	3 cut(s)	163, 355, 795
TaaI	ACNGT	2 cut(s)	230, 756
TaiI	ACGT	1 cut(s)	731
TaqI	TCGA	2 cut(s)	342, 605
TasI	AATT	4 cut(s)	96, 154, 285, 691
TatI	WGTACW	3 cut(s)	399, 684, 786
Tru1I	TTAA	2 cut(s)	173, 255
Tru9I	TTAA	2 cut(s)	173, 255
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	3 cut(s)	248, 781, 808
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	4 cut(s)	209, 282, 351, 440
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	2 cut(s)	677, 801
VpaK11BI	GGWCC	2 cut(s)	62, 140
XapI	RAATTY	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674
XspI	CTAG	3 cut(s)	87, 107, 192
ZrmI	AGTACT	1 cut(s)	788
Zsp2I	ATGCAT	2 cut(s)	604, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.