Rmu_co8466263.1_g000001

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8466263.1
Physical Location & Seq
Reverse (-)
1 .. 1010
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8466263.1_g000001.1.cds

Sequence Viewer

Length: 527 bp
atggctcctccttttctctctttaattcttttattcctgataaaggttgcttcgagttcagctcagggtccaccctcacctggatactacccaagttccagagttaggtcaatagggtttgatcagggttacagaaacctttggggtcctgagcaccaaaacgaagaccagggcggtataagcatttggcttgacaaaagctcaggaagtgggttcaagtcagttcgttcatatggttctgggtactttggtgcagccatcaaggttcagaccggctacactgccggagtgattacatcattctatctgtcgaacaatgaagaacaccctggggatcatgacgagatcgatatcgagttcttgggaacgactcttgataagccttatgttctgcaaaccaatgtgtggactaaaggaagcggagatgggaacaaccttattgggagggagcacaggttccatctctggtttgatccaacacatgactttcacaactatgctatagtgtataaccccagtgagatcat

Protein Analysis

175

Amino Acids

19.44

Weight (kDa)

5.55

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44990
fragaria_vesca FvH4_3g30850
malus_domestica MD11G1146700.v1.1
prunus_persica Prupe.6G110300_v2.0.a1
pyrus_communis pycom11g11970
rosa_chinensis RchiOBHm_Chr5g0057091
rosa_laevigata RLG00000035150
rosa_multiflora Rmu_co8466263.1_g000001 Rmu_sc0001334.1_g000001 Rmu_sc0007667.1_g000003
rosa_roxburghii Rroxscaffold_1G00023110
rosa_rugosa Rorug05G0305700
rosa_samantha Rh5AG375000 Rh5BG386000 Rh5CG409500
rosa_wichuraiana Rw5G035300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 405
AciI CCGC 2 cut(s) 174, 420
AclWI GGATC 2 cut(s) 342, 467
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 4 cut(s) 43, 80, 105, 405
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 3 cut(s) 79, 168, 328
AloI GAACNNNNNNTCC 2 cut(s) 440, 472
AluBI AGCT 2 cut(s) 62, 201
AluI AGCT 2 cut(s) 62, 201
Alw21I GWGCWC 2 cut(s) 156, 453
AlwI GGATC 2 cut(s) 342, 467
ApeKI GCWGC 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 68, 146
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 2 cut(s) 68, 146
BaeI ACNNNNGTAYC 2 cut(s) 235, 268
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 2 cut(s) 156, 453
BbvI GCAGC 1 cut(s) 266
BccI CCATC 3 cut(s) 266, 419, 468
BciT130I CCWGG 3 cut(s) 81, 170, 330
BciVI GTATCC 1 cut(s) 77
BclI TGATCA 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 77
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 3 cut(s) 81, 170, 330
Bme18I GGWCC 2 cut(s) 68, 146
BmgT120I GGNCC 2 cut(s) 68, 146
BmiI GGNNCC 4 cut(s) 6, 69, 147, 458
BmrFI CCNGG 3 cut(s) 81, 170, 330
BmrI ACTGGG 1 cut(s) 510
BmuI ACTGGG 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 46, 78
Bpu10I CCTNAGC 3 cut(s) 63, 150, 202
Bsa29I ATCGAT 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 350
BsaJI CCNNGG 3 cut(s) 169, 328, 329
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 80, 105, 405
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 516
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 3 cut(s) 81, 170, 330
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 169, 328, 329
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 4 cut(s) 43, 80, 105, 405
BseMII CTCAG 3 cut(s) 77, 141, 216
BseNI ACTGG 1 cut(s) 516
BseXI GCAGC 1 cut(s) 266
BsgI GTGCAG 1 cut(s) 273
BshVI ATCGAT 1 cut(s) 348
BsiHKAI GWGCWC 2 cut(s) 156, 453
BsiSI CCGG 2 cut(s) 273, 285
BslI CCNNNNNNNGG 4 cut(s) 43, 80, 105, 405
Bsp1286I GDGCHC 2 cut(s) 156, 453
Bsp143I GATC 5 cut(s) 121, 334, 345, 472, 522
BspACI CCGC 2 cut(s) 174, 420
BspCNI CTCAG 3 cut(s) 76, 142, 215
BspDI ATCGAT 1 cut(s) 348
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 4 cut(s) 6, 69, 147, 458
BspPI GGATC 2 cut(s) 342, 467
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 169, 328, 329
BssMI GATC 5 cut(s) 121, 334, 345, 472, 522
Bst2UI CCWGG 3 cut(s) 81, 170, 330
BstDEI CTNAG 3 cut(s) 63, 150, 202
BstENI CCTNNNNNAGG 1 cut(s) 41
BstKTI GATC 5 cut(s) 124, 337, 348, 475, 525
BstMBI GATC 5 cut(s) 121, 334, 345, 472, 522
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 3 cut(s) 81, 170, 330
BstSCI CCNGG 3 cut(s) 79, 168, 328
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 348
BsuI GTATCC 1 cut(s) 77
BsuTUI ATCGAT 1 cut(s) 348
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 279, 523
CciI TCATGA 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 68, 146
ClaI ATCGAT 1 cut(s) 348
Csp6I GTAC 1 cut(s) 244
CviAII CATG 2 cut(s) 338, 482
CviJI RGCY 7 cut(s) 5, 62, 190, 201, 257, 276, 382
CviKI_1 RGCY 7 cut(s) 5, 62, 190, 201, 257, 276, 382
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 63, 150, 202
DpnI GATC 5 cut(s) 123, 336, 347, 474, 524
DpnII GATC 5 cut(s) 121, 334, 345, 472, 522
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 68, 146
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 3 cut(s) 79, 168, 328
EcoRV GATATC 1 cut(s) 352
FaeI CATG 2 cut(s) 341, 485
FaiI YATR 9 cut(s) 179, 232, 234, 339, 387, 483, 498, 503, 510
FatI CATG 2 cut(s) 337, 481
FauNDI CATATG 1 cut(s) 232
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
HapII CCGG 2 cut(s) 273, 285
Hin1II CATG 2 cut(s) 341, 485
HinfI GANTC 1 cut(s) 370
HpaII CCGG 2 cut(s) 273, 285
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 71, 408
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 6 cut(s) 37, 99, 149, 204, 338, 374
Hpy8I GTNNAC 2 cut(s) 71, 408
HpyCH4V TGCA 2 cut(s) 254, 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 3 cut(s) 63, 150, 202
Hsp92II CATG 2 cut(s) 341, 485
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 5 cut(s) 121, 334, 345, 472, 522
LmnI GCTCC 2 cut(s) 10, 448
Lsp1109I GCAGC 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 128
MalI GATC 5 cut(s) 123, 336, 347, 474, 524
MboI GATC 5 cut(s) 121, 334, 345, 472, 522
MboII GAAGA 2 cut(s) 176, 332
MhlI GDGCHC 2 cut(s) 156, 453
MluCI AATT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 500
MnlI CCTC 3 cut(s) 18, 85, 438
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 495
MspI CCGG 2 cut(s) 273, 285
MspR9I CCNGG 3 cut(s) 81, 170, 330
MvaI CCWGG 3 cut(s) 81, 170, 330
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeI CATATG 1 cut(s) 232
NdeII GATC 5 cut(s) 121, 334, 345, 472, 522
NlaIII CATG 2 cut(s) 341, 485
NlaIV GGNNCC 4 cut(s) 6, 69, 147, 458
PagI TCATGA 1 cut(s) 337
PasI CCCWGGG 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 405
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PpuMI RGGWCCY 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 3 cut(s) 79, 168, 328
PspGI CCWGG 3 cut(s) 79, 168, 328
PspN4I GGNNCC 4 cut(s) 6, 69, 147, 458
PspPI GGNCC 2 cut(s) 68, 146
PspPPI RGGWCCY 1 cut(s) 146
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 5 cut(s) 121, 334, 345, 472, 522
Sau96I GGNCC 2 cut(s) 68, 146
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 3 cut(s) 81, 170, 330
SduI GDGCHC 2 cut(s) 156, 453
SetI ASST 9 cut(s) 48, 64, 82, 110, 141, 203, 267, 438, 458
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 2 cut(s) 68, 146
SmiMI CAYNNNNRTG 1 cut(s) 495
Sse9I AATT 1 cut(s) 24
SsiI CCGC 2 cut(s) 174, 420
StyD4I CCNGG 3 cut(s) 79, 168, 328
TaqI TCGA 4 cut(s) 53, 311, 348, 354
TasI AATT 1 cut(s) 24
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 286, 523
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 219, 333
TspRI CASTG 2 cut(s) 286, 523
Van91I CCANNNNNTGG 1 cut(s) 405
VpaK11BI GGWCC 2 cut(s) 68, 146
XagI CCTNNNNNAGG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.