Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014989

Physical Location & Seq

Genomic Coordinates Forward (+)

28576537 .. 28578788

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTCCTCCTTTTCTCTCTTTAATTCTTTTATTCCTGATAAAGGTTGCTTCGAGTTCAGCTCAGGGTCCACCCTCACCTGGATACTACCCAAGTTCCAGAGTTAGGTCAATAGGGTTTGATCAGGGTTACAGAAACCTTTGGGGTCCTGAGCACCAAAATGAAGACCAGGGCGGTATAAGCATTTGGCTTGACAAAAGCTCAGGAAGTGGGTTCAAGTCAGTTCGTTCATATGGTTCTGGGTACTTTGGTGCAGCCATCAAGGTTCAGTCCGGTTACACTGCCGGAGTGATTACATCATTCTACCTGTCGAACAATGAACAACACCCTGGGGATCACGACGAGATCGATATCGAGTTCTTGGGGACGACTCTTGATAAGCCTTATGTTCTGCAAACCAATGTGTGGACTAAAGGAAGCGGAGATGGGAACAACCTTATTGGGAGGGAGCACAGGTTCCATCTCTGGTTTGATCCAACACATGACTTTCACAACTATGCTATAGTGTATAACCCCAGTGAGATCATATTCCTGGTGGACGATGTGCCGATAAGAAGGTACGCAAGGAAGAGCGATGTCACATTCCCATTGAGGCCGATGTGGGTGTACGGATCCATATGGGATGCATCATCATGGGCCACAGAGGAAGGAAAATACAAAGCCGACTACAATTACCAGCCATTCATTGGTAGGTACAACAACTTCAAACTAGGCCCAGCCTCCGTTGCCTCGCCCTCCGGCACCTCCGGGCTAAGCCGGCAGCAGTACGCGGCAATGGATTGGGTGCAGAGGAACTACAAGGTATACGACTACTGCACCGACTCCAGGAGAGACCATTCGCAGACACCGGAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016787 GO:0016798 GO:0016998 GO:0033946 GO:0043170 GO:0044036 GO:0044237 GO:0044248 GO:0044260 GO:0052736 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

285

Amino Acids

32.21

Weight (kDa)

6.23

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	41 - 224	2.4e-54	Glycosyl hydrolases family 16
XET_C	PF06955	249 - 285	2.6e-13	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44990
fragaria_vesca	FvH4_3g30850
malus_domestica	MD11G1146700.v1.1
prunus_persica	Prupe.6G110300_v2.0.a1
pyrus_communis	pycom11g11970
rosa_chinensis	RchiOBHm_Chr5g0057091
rosa_laevigata	RLG00000035150
rosa_multiflora	Rmu_co8466263.1_g000001 Rmu_sc0001334.1_g000001 Rmu_sc0007667.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023110
rosa_rugosa	Rorug05G0305700
rosa_samantha	Rh5AG375000 Rh5BG386000 Rh5CG409500
rosa_wichuraiana	Rw5G035300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	740
AccB7I	CCANNNNNTGG	2 cut(s)	405, 686
AccI	GTMKAC	1 cut(s)	804
AccII	CGCG	1 cut(s)	770
AciI	CCGC	3 cut(s)	174, 420, 770
AclWI	GGATC	4 cut(s)	342, 467, 606, 619
AfaI	GTAC	5 cut(s)	245, 560, 608, 695, 767
AfiI	CCNNNNNNNGG	6 cut(s)	43, 80, 105, 405, 686, 825
AgsI	TTSAA	2 cut(s)	217, 706
AjnI	CCWGG	5 cut(s)	79, 168, 328, 531, 824
AleI	CACNNNNGTG	1 cut(s)	850
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	2 cut(s)	62, 201
AluI	AGCT	2 cut(s)	62, 201
Alw21I	GWGCWC	2 cut(s)	156, 453
Alw26I	GTCTC	1 cut(s)	825
AlwI	GGATC	4 cut(s)	342, 467, 606, 619
AoxI	GGCC	3 cut(s)	593, 636, 712
ApeKI	GCWGC	2 cut(s)	254, 760
AspS9I	GGNCC	4 cut(s)	68, 146, 636, 713
AsuC2I	CCSGG	1 cut(s)	748
AsuHPI	GGTGA	1 cut(s)	69
AvaII	GGWCC	2 cut(s)	68, 146
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BamHI	GGATCC	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	740
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	156, 453
BbvI	GCAGC	2 cut(s)	266, 772
BccI	CCATC	3 cut(s)	266, 419, 468
BciT130I	CCWGG	5 cut(s)	81, 170, 330, 533, 826
BciVI	GTATCC	1 cut(s)	77
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	1 cut(s)	825
BfaI	CTAG	2 cut(s)	710, 856
BfmI	CTRYAG	1 cut(s)	501
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	3 cut(s)	255, 761, 771
BlpI	GCTNAGC	1 cut(s)	752
BlsI	GCNGC	3 cut(s)	256, 762, 772
Bme1390I	CCNGG	6 cut(s)	81, 170, 330, 533, 748, 826
Bme18I	GGWCC	2 cut(s)	68, 146
BmgT120I	GGNCC	4 cut(s)	68, 146, 636, 713
BmiI	GGNNCC	6 cut(s)	6, 69, 147, 458, 613, 742
BmrFI	CCNGG	6 cut(s)	81, 170, 330, 533, 748, 826
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	613, 635
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	808
Bpu10I	CCTNAGC	3 cut(s)	63, 150, 202
Bpu1102I	GCTNAGC	1 cut(s)	752
BpuMI	CCSGG	1 cut(s)	748
Bsa29I	ATCGAT	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	825
BsaJI	CCNNGG	3 cut(s)	169, 328, 329
BsaWI	WCCGGW	2 cut(s)	272, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 80, 105, 405, 686, 825
Bse118I	RCCGGY	1 cut(s)	756
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	780
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	5 cut(s)	81, 170, 330, 533, 826
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	3 cut(s)	169, 328, 329
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	6 cut(s)	43, 80, 105, 405, 686, 825
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	3 cut(s)	77, 141, 216
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	2 cut(s)	266, 772
BseYI	CCCAGC	1 cut(s)	715
BsgI	GTGCAG	3 cut(s)	273, 799, 806
Bsh1236I	CGCG	1 cut(s)	770
BshFI	GGCC	3 cut(s)	595, 638, 714
BshNI	GGYRCC	1 cut(s)	740
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	156, 453
BsiSI	CCGG	6 cut(s)	273, 285, 738, 747, 757, 848
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	6 cut(s)	43, 80, 105, 405, 686, 825
BsmAI	GTCTC	1 cut(s)	825
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	595, 638, 714
Bso31I	GGTCTC	1 cut(s)	825
Bsp1286I	GDGCHC	2 cut(s)	156, 453
Bsp143I	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
Bsp1720I	GCTNAGC	1 cut(s)	752
BspACI	CCGC	3 cut(s)	174, 420, 770
BspANI	GGCC	3 cut(s)	595, 638, 714
BspCNI	CTCAG	3 cut(s)	76, 142, 215
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	770
BspLI	GGNNCC	6 cut(s)	6, 69, 147, 458, 613, 742
BspPI	GGATC	4 cut(s)	342, 467, 606, 619
BspQI	GCTCTTC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	780
BsrFI	RCCGGY	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	756
BssECI	CCNNGG	3 cut(s)	169, 328, 329
BssMI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
BssNAI	GTATAC	1 cut(s)	805
Bst1107I	GTATAC	1 cut(s)	805
Bst2UI	CCWGG	5 cut(s)	81, 170, 330, 533, 826
Bst6I	CTCTTC	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	758
BstDEI	CTNAG	4 cut(s)	63, 150, 202, 752
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	1 cut(s)	770
BstKTI	GATC	6 cut(s)	124, 337, 348, 475, 525, 614
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 725, 757
BstNI	CCWGG	5 cut(s)	81, 170, 330, 533, 826
BstSCI	CCNGG	6 cut(s)	79, 168, 328, 531, 746, 824
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	770
BstV1I	GCAGC	2 cut(s)	266, 772
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BstZ17I	GTATAC	1 cut(s)	805
Bsu15I	ATCGAT	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	595, 638, 714
BsuTUI	ATCGAT	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	628
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 523
Cac8I	GCNNGC	1 cut(s)	758
Cfr10I	RCCGGY	1 cut(s)	756
Cfr13I	GGNCC	4 cut(s)	68, 146, 636, 713
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	5 cut(s)	244, 559, 607, 694, 766
CviAII	CATG	2 cut(s)	482, 633
CviQI	GTAC	5 cut(s)	244, 559, 607, 694, 766
DdeI	CTNAG	4 cut(s)	63, 150, 202, 752
DpnI	GATC	6 cut(s)	123, 336, 347, 474, 524, 613
DpnII	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	825
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	68, 146
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	5 cut(s)	79, 168, 328, 531, 824
EcoRV	GATATC	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	628
FaeI	CATG	2 cut(s)	485, 636
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	2 cut(s)	481, 632
FauNDI	CATATG	2 cut(s)	232, 617
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	804
Fnu4HI	GCNGC	3 cut(s)	255, 761, 771
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	3 cut(s)	255, 761, 771
FspBI	CTAG	2 cut(s)	710, 856
GluI	GCNGC	3 cut(s)	255, 761, 771
GsaI	CCCAGC	1 cut(s)	719
GsuI	CTGGAG	1 cut(s)	808
HaeIII	GGCC	3 cut(s)	595, 638, 714
HapII	CCGG	6 cut(s)	273, 285, 738, 747, 757, 848
Hin1II	CATG	2 cut(s)	485, 636
HinfI	GANTC	2 cut(s)	370, 821
HpaII	CCGG	6 cut(s)	273, 285, 738, 747, 757, 848
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	5 cut(s)	71, 408, 538, 607, 805
Hpy188III	TCNNGA	6 cut(s)	37, 99, 149, 204, 338, 374
Hpy8I	GTNNAC	5 cut(s)	71, 408, 538, 607, 805
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	549, 641
HpyCH4V	TGCA	5 cut(s)	254, 394, 626, 787, 816
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 725, 757
HpyF3I	CTNAG	4 cut(s)	63, 150, 202, 752
Hsp92II	CATG	2 cut(s)	485, 636
KroI	GCCGGC	1 cut(s)	756
KroNI	GCCGGC	1 cut(s)	758
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	2 cut(s)	10, 448
Lsp1109I	GCAGC	2 cut(s)	266, 772
LweI	GCATC	2 cut(s)	613, 635
MaeI	CTAG	2 cut(s)	710, 856
MaeIII	GTNAC	3 cut(s)	128, 275, 577
MalI	GATC	6 cut(s)	123, 336, 347, 474, 524, 613
MboI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
MboII	GAAGA	2 cut(s)	176, 580
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	156, 453
MluCI	AATT	2 cut(s)	24, 670
MlyI	GAGTC	2 cut(s)	364, 815
MmeI	TCCRAC	1 cut(s)	500
Mph1103I	ATGCAT	1 cut(s)	628
MroNI	GCCGGC	1 cut(s)	756
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	4 cut(s)	159, 495, 631, 850
MspI	CCGG	6 cut(s)	273, 285, 738, 747, 757, 848
MspR9I	CCNGG	6 cut(s)	81, 170, 330, 533, 748, 826
MvaI	CCWGG	5 cut(s)	81, 170, 330, 533, 826
MvnI	CGCG	1 cut(s)	770
MwoI	GCNNNNNNNGC	3 cut(s)	180, 725, 757
NaeI	GCCGGC	1 cut(s)	758
NciI	CCSGG	1 cut(s)	748
NdeI	CATATG	2 cut(s)	232, 617
NdeII	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
NgoMIV	GCCGGC	1 cut(s)	756
NlaIII	CATG	2 cut(s)	485, 636
NlaIV	GGNNCC	6 cut(s)	6, 69, 147, 458, 613, 742
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	628
OliI	CACNNNNGTG	1 cut(s)	850
PasI	CCCWGGG	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	758
PflMI	CCANNNNNTGG	2 cut(s)	405, 686
PfoI	TCCNGGA	1 cut(s)	824
PkrI	GCNGC	3 cut(s)	256, 762, 772
PleI	GAGTC	2 cut(s)	364, 815
PpsI	GAGTC	2 cut(s)	364, 815
PpuMI	RGGWCCY	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	5 cut(s)	79, 168, 328, 531, 824
PspFI	CCCAGC	1 cut(s)	715
PspGI	CCWGG	5 cut(s)	79, 168, 328, 531, 824
PspN4I	GGNNCC	6 cut(s)	6, 69, 147, 458, 613, 742
PspPI	GGNCC	4 cut(s)	68, 146, 636, 713
PspPPI	RGGWCCY	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	5 cut(s)	245, 560, 608, 695, 767
RsaNI	GTAC	5 cut(s)	244, 559, 607, 694, 766
RseI	CAYNNNNRTG	4 cut(s)	159, 495, 631, 850
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	255, 761, 771
Sau3AI	GATC	6 cut(s)	121, 334, 345, 472, 522, 611
Sau96I	GGNCC	4 cut(s)	68, 146, 636, 713
SchI	GAGTC	2 cut(s)	364, 815
ScrFI	CCNGG	6 cut(s)	81, 170, 330, 533, 748, 826
SduI	GDGCHC	2 cut(s)	156, 453
SfaNI	GCATC	2 cut(s)	613, 635
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	2 cut(s)	68, 146
SmiMI	CAYNNNNRTG	4 cut(s)	159, 495, 631, 850
Sse9I	AATT	2 cut(s)	24, 670
SsiI	CCGC	3 cut(s)	174, 420, 770
SspMI	CTAG	2 cut(s)	710, 856
StyD4I	CCNGG	6 cut(s)	79, 168, 328, 531, 746, 824
TaqI	TCGA	4 cut(s)	53, 311, 348, 354
TasI	AATT	2 cut(s)	24, 670
TauI	GCSGC	1 cut(s)	773
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	2 cut(s)	286, 523
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	2 cut(s)	254, 760
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	4 cut(s)	177, 219, 333, 673
TspGWI	ACGGA	2 cut(s)	624, 712
TspRI	CASTG	2 cut(s)	286, 523
Van91I	CCANNNNNTGG	2 cut(s)	405, 686
VpaK11BI	GGWCC	2 cut(s)	68, 146
XagI	CCTNNNNNAGG	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	804
XspI	CTAG	2 cut(s)	710, 856
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.