Prupe.6G110300_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014989
Physical Location & Seq
Forward (+)
7915817 .. 7918028
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G110300.1

Sequence Viewer

Length: 1056 bp
ATGTGGGGTCCACAGATCACCCTATTTATACCCAACTGTAAAGCCATACTATTTTCATATGCTTACTACTACCCACCTTCAATTCTCAGTCCCACCCCTGTCTTCAAAACAGAGTCACTCTGTTTGTGCTGCATTGCCTTCTCATTTCCCCTTCTTTTCTTTTTTTTTCTCTTCATGGCTCCTCTTCTCCCTTTAATTTTCTTCCTCATGTTCTCTTCAAATAGTGCTCAGGGTCCCCCCCCACCTGGCTATAACCCCAGTTCCAAAATTAGCACAGTAGGGTTTGATCAGGGTTTTAGAAACCTATGGGGACTTGAGCATCAGAATTTAGACCAGGGTGCATTAACAATCTGGCTTGATTCTAGCTCAGGAAGTGGGTTCAAGTCACTTCATCCATATCGTTCTGGATACTTTGGAGCAGCCGTCAAGCTCCAACCAGGTTATACTGCTGGAGTAATTACATCATTTTATCTCTCTAACAATGAAGAACACCCAGGGAACCACGACGAAATCGATATCGAGTTCCTCGGGACAACCCCCGGAAAGCCCTACACTCTGCAAACCAATGTGTACATTAGAGGAAGTGGAGATGCAAACATAATTGGGAGAGAGAAGAAGTTTCATCTCTGGTTTGATCCAACACAAGACTTTCATAACTATGCTATAGTATGGAACCCTACTGAGATCATATTCCTGGTGGATGATGTGCCCATAAGAAGGTACCAAAGAAAGAGTGATGCCACGTTTCCATTGAGGCCAATGTGGGCATATGGATCCATATGGGATGCATCAACATGGGCCACAGAGGATGGAAAATACAAAGCCGACTACTCGTACCAACCATTTGTTGGAAGATACAACAATTTCAAACTAGGTGGGTGCACAGCCGATGGCTCTACTACAACCTCATGCCAGCCGCCCTCAGCCTCGCCCTCCGGCGCAACAGGGCTAAGCCAGCAGCAGTACTCAGCCATGGAGTGGGTGCAGAGGAACTACTTGGTGTATGACTATTGCCGGGACCCGAAGAGAGACCATACACAAACACCTGAGTGTTGA

Protein Analysis

352

Amino Acids

39.65

Weight (kDa)

5.97

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44990
fragaria_vesca FvH4_3g30850
malus_domestica MD11G1146700.v1.1
prunus_persica Prupe.6G110300_v2.0.a1
pyrus_communis pycom11g11970
rosa_chinensis RchiOBHm_Chr5g0057091
rosa_laevigata RLG00000035150
rosa_multiflora Rmu_co8466263.1_g000001 Rmu_sc0001334.1_g000001 Rmu_sc0007667.1_g000003
rosa_roxburghii Rroxscaffold_1G00023110
rosa_rugosa Rorug05G0305700
rosa_samantha Rh5AG375000 Rh5BG386000 Rh5CG409500
rosa_wichuraiana Rw5G035300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 720
AccB1I GGYRCC 1 cut(s) 720
AccB7I CCANNNNNTGG 2 cut(s) 848, 978
AciI CCGC 1 cut(s) 917
AclWI GGATC 3 cut(s) 629, 768, 781
AcsI RAATTY 1 cut(s) 325
AfaI GTAC 4 cut(s) 572, 722, 836, 965
AfiI CCNNNNNNNGG 4 cut(s) 245, 717, 848, 978
AgsI TTSAA 5 cut(s) 81, 106, 219, 382, 868
AjnI CCWGG 5 cut(s) 244, 333, 436, 493, 693
AleI CACNNNNGTG 1 cut(s) 1048
AluBI AGCT 2 cut(s) 366, 430
AluI AGCT 2 cut(s) 366, 430
Alw21I GWGCWC 2 cut(s) 229, 884
Alw26I GTCTC 1 cut(s) 1023
Alw44I GTGCAC 1 cut(s) 880
AlwI GGATC 3 cut(s) 629, 768, 781
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 2 cut(s) 755, 798
ApaLI GTGCAC 1 cut(s) 880
ApeKI GCWGC 3 cut(s) 129, 419, 958
ApoI RAATTY 1 cut(s) 325
Asp718I GGTACC 1 cut(s) 720
AspLEI GCGC 1 cut(s) 941
AspS9I GGNCC 4 cut(s) 8, 233, 798, 1018
AsuC2I CCSGG 2 cut(s) 540, 1016
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 3 cut(s) 8, 233, 1018
BaeGI GKGCMC 2 cut(s) 711, 884
BamHI GGATCC 1 cut(s) 773
BanI GGYRCC 1 cut(s) 720
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 2 cut(s) 229, 884
BbvCI CCTCAGC 1 cut(s) 922
BbvI GCAGC 3 cut(s) 116, 431, 970
BccI CCATC 2 cut(s) 803, 884
BceAI ACGGC 1 cut(s) 407
BciT130I CCWGG 5 cut(s) 246, 335, 438, 495, 695
BciVI GTATCC 1 cut(s) 401
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 2 cut(s) 540, 1016
BcoDI GTCTC 1 cut(s) 1023
BfaI CTAG 2 cut(s) 363, 872
BfmI CTRYAG 1 cut(s) 663
BfuI GTATCC 1 cut(s) 401
BisI GCNGC 4 cut(s) 130, 420, 917, 959
BlpI GCTNAGC 1 cut(s) 950
BlsI GCNGC 4 cut(s) 131, 421, 918, 960
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 7 cut(s) 246, 335, 438, 495, 540, 695, 1016
Bme18I GGWCC 3 cut(s) 8, 233, 1018
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 4 cut(s) 8, 233, 798, 1018
BmrFI CCNGG 7 cut(s) 246, 335, 438, 495, 540, 695, 1016
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 5 cut(s) 328, 580, 727, 775, 797
BmuI ACTGGG 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 3 cut(s) 228, 367, 922
Bpu1102I GCTNAGC 1 cut(s) 950
BpuEI CTTGAG 1 cut(s) 335
BpuMI CCSGG 2 cut(s) 540, 1016
Bsa29I ATCGAT 1 cut(s) 513
BsaI GGTCTC 1 cut(s) 1023
BsaJI CCNNGG 6 cut(s) 334, 493, 494, 526, 538, 972
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 717, 848, 978
Bse1I ACTGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 5 cut(s) 246, 335, 438, 495, 695
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 6 cut(s) 334, 493, 494, 526, 538, 972
BseGI GGATG 4 cut(s) 391, 706, 790, 814
BseLI CCNNNNNNNGG 4 cut(s) 245, 717, 848, 978
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 7 cut(s) 100, 242, 381, 672, 936, 981, 1038
BseNI ACTGG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 171
BseSI GKGCMC 2 cut(s) 711, 884
BseXI GCAGC 3 cut(s) 116, 431, 970
BsgI GTGCAG 1 cut(s) 1004
BshFI GGCC 2 cut(s) 757, 800
BshNI GGYRCC 1 cut(s) 720
BshVI ATCGAT 1 cut(s) 513
BsiHKAI GWGCWC 2 cut(s) 229, 884
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 3 cut(s) 540, 936, 1015
BslFI GGGAC 5 cut(s) 75, 219, 324, 544, 1031
BslI CCNNNNNNNGG 4 cut(s) 245, 717, 848, 978
BsmAI GTCTC 1 cut(s) 1023
BsmFI GGGAC 5 cut(s) 75, 219, 324, 544, 1031
BsnI GGCC 2 cut(s) 757, 800
Bso31I GGTCTC 1 cut(s) 1023
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 3 cut(s) 229, 711, 884
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 5 cut(s) 15, 286, 634, 684, 773
Bsp1720I GCTNAGC 1 cut(s) 950
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 1 cut(s) 917
BspANI GGCC 2 cut(s) 757, 800
BspCNI CTCAG 7 cut(s) 99, 241, 380, 673, 935, 980, 1039
BspDI ATCGAT 1 cut(s) 513
BspPI GGATC 3 cut(s) 629, 768, 781
BspT107I GGYRCC 1 cut(s) 720
BspTNI GGTCTC 1 cut(s) 1023
BsrDI GCAATG 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 6 cut(s) 334, 493, 494, 526, 538, 972
BssMI GATC 5 cut(s) 15, 286, 634, 684, 773
BssT1I CCWWGG 1 cut(s) 972
Bst2UI CCWGG 5 cut(s) 246, 335, 438, 495, 695
Bst4CI ACNGT 2 cut(s) 38, 277
Bst6I CTCTTC 4 cut(s) 176, 189, 220, 1019
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 914, 956
BstDEI CTNAG 8 cut(s) 86, 228, 367, 681, 922, 950, 967, 1047
BstDSI CCRYGG 1 cut(s) 972
BstF5I GGATG 4 cut(s) 391, 706, 790, 814
BstHHI GCGC 1 cut(s) 941
BstKTI GATC 5 cut(s) 18, 289, 637, 687, 776
BstMAI GTCTC 1 cut(s) 1023
BstMBI GATC 5 cut(s) 15, 286, 634, 684, 773
BstMWI GCNNNNNNNGC 1 cut(s) 955
BstNI CCWGG 5 cut(s) 246, 335, 438, 495, 695
BstSCI CCNGG 7 cut(s) 244, 333, 436, 493, 538, 693, 1014
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 2 cut(s) 711, 884
BstV1I GCAGC 3 cut(s) 116, 431, 970
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 773
BstYI RGATCY 1 cut(s) 773
Bsu15I ATCGAT 1 cut(s) 513
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 2 cut(s) 757, 800
BsuTUI ATCGAT 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 972
BtsCI GGATG 4 cut(s) 391, 706, 790, 814
Cac8I GCNNGC 2 cut(s) 914, 956
CfoI GCGC 1 cut(s) 941
Cfr13I GGNCC 4 cut(s) 8, 233, 798, 1018
ClaI ATCGAT 1 cut(s) 513
CsiI ACCWGGT 1 cut(s) 436
Csp6I GTAC 4 cut(s) 571, 721, 835, 964
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviAII CATG 5 cut(s) 175, 208, 795, 909, 973
CviQI GTAC 4 cut(s) 571, 721, 835, 964
DdeI CTNAG 8 cut(s) 86, 228, 367, 681, 922, 950, 967, 1047
DpnI GATC 5 cut(s) 17, 288, 636, 686, 775
DpnII GATC 5 cut(s) 15, 286, 634, 684, 773
Eam1104I CTCTTC 4 cut(s) 176, 189, 220, 1019
EarI CTCTTC 4 cut(s) 176, 189, 220, 1019
Eco130I CCWWGG 1 cut(s) 972
Eco31I GGTCTC 1 cut(s) 1023
Eco32I GATATC 1 cut(s) 517
Eco47I GGWCC 3 cut(s) 8, 233, 1018
Eco88I CYCGRG 1 cut(s) 527
EcoO109I RGGNCCY 2 cut(s) 233, 1018
EcoRII CCWGG 5 cut(s) 244, 333, 436, 493, 693
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 972
EcoT22I ATGCAT 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 972
FaeI CATG 5 cut(s) 178, 211, 798, 912, 976
FaqI GGGAC 5 cut(s) 75, 219, 324, 544, 1031
FatI CATG 5 cut(s) 174, 207, 794, 908, 972
FauNDI CATATG 3 cut(s) 58, 769, 779
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 130, 420, 917, 959
FokI GGATG 4 cut(s) 378, 713, 797, 821
Fsp4HI GCNGC 4 cut(s) 130, 420, 917, 959
FspBI CTAG 2 cut(s) 363, 872
GlaI GCGC 1 cut(s) 940
GluI GCNGC 4 cut(s) 130, 420, 917, 959
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 2 cut(s) 757, 800
HapII CCGG 3 cut(s) 540, 936, 1015
HhaI GCGC 1 cut(s) 941
Hin1II CATG 5 cut(s) 178, 211, 798, 912, 976
Hin6I GCGC 1 cut(s) 939
HinP1I GCGC 1 cut(s) 939
HinfI GANTC 2 cut(s) 113, 359
HpaII CCGG 3 cut(s) 540, 936, 1015
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 3 cut(s) 11, 571, 882
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 3 cut(s) 369, 405, 529
Hpy8I GTNNAC 3 cut(s) 11, 571, 882
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 4 cut(s) 87, 148, 161, 711
HpyCH4III ACNGT 2 cut(s) 38, 277
HpyCH4IV ACGT 1 cut(s) 743
HpyCH4V TGCA 7 cut(s) 132, 341, 559, 593, 788, 882, 985
HpyF10VI GCNNNNNNNGC 1 cut(s) 955
HpyF3I CTNAG 8 cut(s) 86, 228, 367, 681, 922, 950, 967, 1047
HpySE526I ACGT 1 cut(s) 743
Hsp92II CATG 5 cut(s) 178, 211, 798, 912, 976
HspAI GCGC 1 cut(s) 939
KflI GGGWCCC 2 cut(s) 233, 1018
KpnI GGTACC 1 cut(s) 724
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 5 cut(s) 15, 286, 634, 684, 773
LmnI GCTCC 3 cut(s) 184, 416, 435
Lsp1109I GCAGC 3 cut(s) 116, 431, 970
LweI GCATC 5 cut(s) 328, 580, 727, 775, 797
MabI ACCWGGT 1 cut(s) 436
MaeI CTAG 2 cut(s) 363, 872
MaeII ACGT 1 cut(s) 743
MaeIII GTNAC 2 cut(s) 114, 384
MalI GATC 5 cut(s) 17, 288, 636, 686, 775
MboI GATC 5 cut(s) 15, 286, 634, 684, 773
MboII GAAGA 9 cut(s) 94, 163, 176, 193, 207, 497, 625, 864, 1036
MflI RGATCY 1 cut(s) 773
MhlI GDGCHC 3 cut(s) 229, 711, 884
MluCI AATT 7 cut(s) 81, 195, 267, 325, 456, 600, 862
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 3 cut(s) 457, 662, 829
Mph1103I ATGCAT 1 cut(s) 790
MseI TTAA 2 cut(s) 194, 344
MslI CAYNNNNRTG 3 cut(s) 657, 793, 1048
MspI CCGG 3 cut(s) 540, 936, 1015
MspR9I CCNGG 7 cut(s) 246, 335, 438, 495, 540, 695, 1016
MvaI CCWGG 5 cut(s) 246, 335, 438, 495, 695
MwoI GCNNNNNNNGC 1 cut(s) 955
NciI CCSGG 2 cut(s) 540, 1016
NcoI CCATGG 1 cut(s) 972
NdeI CATATG 3 cut(s) 58, 769, 779
NdeII GATC 5 cut(s) 15, 286, 634, 684, 773
NlaIII CATG 5 cut(s) 178, 211, 798, 912, 976
NmuCI GTSAC 2 cut(s) 114, 384
NsiI ATGCAT 1 cut(s) 790
OliI CACNNNNGTG 1 cut(s) 1048
PasI CCCWGGG 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PfeI GAWTC 1 cut(s) 359
PflMI CCANNNNNTGG 2 cut(s) 848, 978
PkrI GCNGC 4 cut(s) 131, 421, 918, 960
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 2 cut(s) 233, 1018
Psp5II RGGWCCY 2 cut(s) 233, 1018
Psp6I CCWGG 5 cut(s) 244, 333, 436, 493, 693
PspGI CCWGG 5 cut(s) 244, 333, 436, 493, 693
PspPI GGNCC 4 cut(s) 8, 233, 798, 1018
PspPPI RGGWCCY 2 cut(s) 233, 1018
PsuI RGATCY 1 cut(s) 773
RsaI GTAC 4 cut(s) 572, 722, 836, 965
RsaNI GTAC 4 cut(s) 571, 721, 835, 964
RseI CAYNNNNRTG 3 cut(s) 657, 793, 1048
SaqAI TTAA 2 cut(s) 194, 344
SatI GCNGC 4 cut(s) 130, 420, 917, 959
Sau3AI GATC 5 cut(s) 15, 286, 634, 684, 773
Sau96I GGNCC 4 cut(s) 8, 233, 798, 1018
ScaI AGTACT 1 cut(s) 965
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 7 cut(s) 246, 335, 438, 495, 540, 695, 1016
SduI GDGCHC 3 cut(s) 229, 711, 884
SexAI ACCWGGT 1 cut(s) 436
SfaNI GCATC 5 cut(s) 328, 580, 727, 775, 797
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 3 cut(s) 8, 233, 1018
SmiMI CAYNNNNRTG 3 cut(s) 657, 793, 1048
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 7 cut(s) 81, 195, 267, 325, 456, 600, 862
SsiI CCGC 1 cut(s) 917
SspMI CTAG 2 cut(s) 363, 872
StyD4I CCNGG 7 cut(s) 244, 333, 436, 493, 538, 693, 1014
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 2 cut(s) 38, 277
TaiI ACGT 1 cut(s) 746
TaqI TCGA 2 cut(s) 513, 519
TasI AATT 7 cut(s) 81, 195, 267, 325, 456, 600, 862
TatI WGTACW 2 cut(s) 570, 963
TauI GCSGC 1 cut(s) 919
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 194, 344
Tru9I TTAA 2 cut(s) 194, 344
TseFI GTSAC 2 cut(s) 114, 384
TseI GCWGC 3 cut(s) 129, 419, 958
Tsp45I GTSAC 2 cut(s) 114, 384
TspDTI ATGAA 6 cut(s) 45, 163, 380, 498, 611, 641
Van91I CCANNNNNTGG 2 cut(s) 848, 978
VneI GTGCAC 1 cut(s) 880
VpaK11BI GGWCC 3 cut(s) 8, 233, 1018
XapI RAATTY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XspI CTAG 2 cut(s) 363, 872
ZrmI AGTACT 1 cut(s) 965
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.