transcription regulatory region sequence-specific DNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g33170 |
| rosa_laevigata | RLG00000035367 |
| rosa_multiflora | Rmu_sc0001650.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00020300 |
| rosa_rugosa | Rorug05G0330800 |
| rosa_samantha | Rh5AG395100 Rh5BG407500 Rh5CG431200 Rh5DG422300 |
| rosa_wichuraiana | Rw5G037160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 631 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1391 |
| AccBSI | CCGCTC | 1 cut(s) | 1700 |
| AccI | GTMKAC | 1 cut(s) | 1773 |
| AccII | CGCG | 3 cut(s) | 982, 1219, 1462 |
| AciI | CCGC | 4 cut(s) | 982, 1219, 1462, 1700 |
| AclWI | GGATC | 6 cut(s) | 588, 893, 906, 1139, 1376, 1389 |
| AcyI | GRCGYC | 1 cut(s) | 628 |
| AfaI | GTAC | 2 cut(s) | 70, 1231 |
| AfeI | AGCGCT | 1 cut(s) | 676 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 840, 1154, 1391 |
| AjiI | CACGTC | 1 cut(s) | 187 |
| AluBI | AGCT | 4 cut(s) | 400, 508, 1202, 1752 |
| AluI | AGCT | 4 cut(s) | 400, 508, 1202, 1752 |
| Alw26I | GTCTC | 5 cut(s) | 529, 693, 1311, 1542, 1761 |
| AlwI | GGATC | 6 cut(s) | 588, 893, 906, 1139, 1376, 1389 |
| Aor51HI | AGCGCT | 1 cut(s) | 676 |
| AoxI | GGCC | 1 cut(s) | 456 |
| ApeKI | GCWGC | 3 cut(s) | 8, 227, 397 |
| AseI | ATTAAT | 1 cut(s) | 1161 |
| AspLEI | GCGC | 1 cut(s) | 677 |
| AsuC2I | CCSGG | 1 cut(s) | 102 |
| AsuHPI | GGTGA | 6 cut(s) | 331, 430, 626, 1463, 1649, 1666 |
| AsuII | TTCGAA | 1 cut(s) | 281 |
| BamHI | GGATCC | 2 cut(s) | 898, 1381 |
| BanII | GRGCYC | 1 cut(s) | 384 |
| BauI | CACGAG | 1 cut(s) | 1801 |
| BbsI | GAAGAC | 1 cut(s) | 89 |
| BbvI | GCAGC | 3 cut(s) | 20, 214, 409 |
| BccI | CCATC | 7 cut(s) | 415, 448, 617, 701, 803, 833, 1753 |
| BclI | TGATCA | 1 cut(s) | 1045 |
| BcnI | CCSGG | 1 cut(s) | 102 |
| BcoDI | GTCTC | 5 cut(s) | 529, 693, 1311, 1542, 1761 |
| BfaI | CTAG | 5 cut(s) | 134, 731, 1178, 1203, 1649 |
| BfmI | CTRYAG | 1 cut(s) | 401 |
| BfoI | RGCGCY | 1 cut(s) | 678 |
| BglII | AGATCT | 1 cut(s) | 293 |
| BisI | GCNGC | 3 cut(s) | 9, 228, 398 |
| BlsI | GCNGC | 3 cut(s) | 10, 229, 399 |
| Bme1390I | CCNGG | 1 cut(s) | 102 |
| BmgBI | CACGTC | 1 cut(s) | 187 |
| BmiI | GGNNCC | 3 cut(s) | 832, 900, 1383 |
| BmrFI | CCNGG | 1 cut(s) | 102 |
| BmsI | GCATC | 9 cut(s) | 53, 78, 491, 609, 733, 1078, 1315, 1546, 1675 |
| BpiI | GAAGAC | 1 cut(s) | 89 |
| BpmI | CTGGAG | 2 cut(s) | 956, 1436 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1092, 1560 |
| Bpu14I | TTCGAA | 1 cut(s) | 281 |
| BpuEI | CTTGAG | 2 cut(s) | 913, 1314 |
| BpuMI | CCSGG | 1 cut(s) | 102 |
| BsaHI | GRCGYC | 1 cut(s) | 628 |
| BsaJI | CCNNGG | 4 cut(s) | 375, 1152, 1661, 1689 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 929, 959, 1409, 1439 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 840, 1154, 1391 |
| Bse1I | ACTGG | 7 cut(s) | 558, 757, 916, 1000, 1237, 1480, 1627 |
| BseDI | CCNNGG | 4 cut(s) | 375, 1152, 1661, 1689 |
| BseGI | GGATG | 5 cut(s) | 44, 748, 1103, 1340, 1571 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 840, 1154, 1391 |
| BseMII | CTCAG | 2 cut(s) | 1106, 1574 |
| BseNI | ACTGG | 7 cut(s) | 558, 757, 916, 1000, 1237, 1480, 1627 |
| BseXI | GCAGC | 3 cut(s) | 20, 214, 409 |
| Bsh1236I | CGCG | 3 cut(s) | 982, 1219, 1462 |
| BshFI | GGCC | 1 cut(s) | 458 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| BslFI | GGGAC | 1 cut(s) | 489 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 840, 1154, 1391 |
| BsmAI | GTCTC | 5 cut(s) | 529, 693, 1311, 1542, 1761 |
| BsmBI | CGTCTC | 1 cut(s) | 1761 |
| BsmFI | GGGAC | 1 cut(s) | 489 |
| BsnI | GGCC | 1 cut(s) | 458 |
| Bsp119I | TTCGAA | 1 cut(s) | 281 |
| Bsp1286I | GDGCHC | 1 cut(s) | 384 |
| Bsp143I | GATC | 9 cut(s) | 293, 519, 580, 664, 898, 1045, 1144, 1381, 1645 |
| BspACI | CCGC | 4 cut(s) | 982, 1219, 1462, 1700 |
| BspANI | GGCC | 1 cut(s) | 458 |
| BspCNI | CTCAG | 2 cut(s) | 1105, 1573 |
| BspFNI | CGCG | 3 cut(s) | 982, 1219, 1462 |
| BspHI | TCATGA | 3 cut(s) | 805, 871, 1354 |
| BspLI | GGNNCC | 3 cut(s) | 832, 900, 1383 |
| BspPI | GGATC | 6 cut(s) | 588, 893, 906, 1139, 1376, 1389 |
| BspT104I | TTCGAA | 1 cut(s) | 281 |
| BsrBI | CCGCTC | 1 cut(s) | 1700 |
| BsrI | ACTGG | 7 cut(s) | 558, 757, 916, 1000, 1237, 1480, 1627 |
| BssECI | CCNNGG | 4 cut(s) | 375, 1152, 1661, 1689 |
| BssMI | GATC | 9 cut(s) | 293, 519, 580, 664, 898, 1045, 1144, 1381, 1645 |
| BssNI | GRCGYC | 1 cut(s) | 628 |
| BssSI | CACGAG | 1 cut(s) | 1801 |
| BssT1I | CCWWGG | 2 cut(s) | 1661, 1689 |
| Bst2BI | CACGAG | 1 cut(s) | 1801 |
| Bst4CI | ACNGT | 3 cut(s) | 68, 469, 1778 |
| Bst6I | CTCTTC | 3 cut(s) | 138, 429, 510 |
| BstACI | GRCGYC | 1 cut(s) | 628 |
| BstBI | TTCGAA | 1 cut(s) | 281 |
| BstC8I | GCNNGC | 1 cut(s) | 155 |
| BstDEI | CTNAG | 3 cut(s) | 686, 1092, 1560 |
| BstDSI | CCRYGG | 1 cut(s) | 1152 |
| BstF5I | GGATG | 5 cut(s) | 44, 748, 1103, 1340, 1571 |
| BstFNI | CGCG | 3 cut(s) | 982, 1219, 1462 |
| BstH2I | RGCGCY | 1 cut(s) | 678 |
| BstHHI | GCGC | 1 cut(s) | 677 |
| BstKTI | GATC | 9 cut(s) | 296, 522, 583, 667, 901, 1048, 1147, 1384, 1648 |
| BstMAI | GTCTC | 5 cut(s) | 529, 693, 1311, 1542, 1761 |
| BstMBI | GATC | 9 cut(s) | 293, 519, 580, 664, 898, 1045, 1144, 1381, 1645 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 50 |
| BstNSI | RCATGY | 1 cut(s) | 44 |
| BstSCI | CCNGG | 1 cut(s) | 100 |
| BstSFI | CTRYAG | 1 cut(s) | 401 |
| BstUI | CGCG | 3 cut(s) | 982, 1219, 1462 |
| BstV1I | GCAGC | 3 cut(s) | 20, 214, 409 |
| BstV2I | GAAGAC | 1 cut(s) | 89 |
| BstX2I | RGATCY | 3 cut(s) | 293, 898, 1381 |
| BstYI | RGATCY | 3 cut(s) | 293, 898, 1381 |
| BsuRI | GGCC | 1 cut(s) | 458 |
| BtgI | CCRYGG | 1 cut(s) | 1152 |
| BtrI | CACGTC | 1 cut(s) | 187 |
| BtsCI | GGATG | 5 cut(s) | 44, 748, 1103, 1340, 1571 |
| BtsIMutI | CAGTG | 7 cut(s) | 660, 909, 993, 1083, 1320, 1551, 1783 |
| Cac8I | GCNNGC | 1 cut(s) | 155 |
| CciI | TCATGA | 3 cut(s) | 805, 871, 1354 |
| CfoI | GCGC | 1 cut(s) | 677 |
| Csp6I | GTAC | 2 cut(s) | 69, 1230 |
| CviAII | CATG | 7 cut(s) | 41, 806, 872, 959, 1049, 1196, 1355 |
| CviQI | GTAC | 2 cut(s) | 69, 1230 |
| DdeI | CTNAG | 3 cut(s) | 686, 1092, 1560 |
| DpnI | GATC | 9 cut(s) | 295, 521, 582, 666, 900, 1047, 1146, 1383, 1647 |
| DpnII | GATC | 9 cut(s) | 293, 519, 580, 664, 898, 1045, 1144, 1381, 1645 |
| Eam1104I | CTCTTC | 3 cut(s) | 138, 429, 510 |
| EarI | CTCTTC | 3 cut(s) | 138, 429, 510 |
| Eco130I | CCWWGG | 2 cut(s) | 1661, 1689 |
| Eco24I | GRGCYC | 1 cut(s) | 384 |
| Eco32I | GATATC | 1 cut(s) | 340 |
| Eco47III | AGCGCT | 1 cut(s) | 676 |
| EcoRV | GATATC | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 2 cut(s) | 1661, 1689 |
| EcoT22I | ATGCAT | 1 cut(s) | 46 |
| EcoT38I | GRGCYC | 1 cut(s) | 384 |
| ErhI | CCWWGG | 2 cut(s) | 1661, 1689 |
| Esp3I | CGTCTC | 1 cut(s) | 1761 |
| FaeI | CATG | 7 cut(s) | 44, 809, 875, 962, 1052, 1199, 1358 |
| FaqI | GGGAC | 1 cut(s) | 489 |
| FatI | CATG | 7 cut(s) | 40, 805, 871, 958, 1048, 1195, 1354 |
| FauI | CCCGC | 3 cut(s) | 975, 1212, 1455 |
| FbaI | TGATCA | 1 cut(s) | 1045 |
| FblI | GTMKAC | 1 cut(s) | 1773 |
| Fnu4HI | GCNGC | 3 cut(s) | 9, 228, 398 |
| FokI | GGATG | 5 cut(s) | 31, 755, 1110, 1347, 1578 |
| FriOI | GRGCYC | 1 cut(s) | 384 |
| Fsp4HI | GCNGC | 3 cut(s) | 9, 228, 398 |
| FspBI | CTAG | 5 cut(s) | 134, 731, 1178, 1203, 1649 |
| GlaI | GCGC | 1 cut(s) | 676 |
| GluI | GCNGC | 3 cut(s) | 9, 228, 398 |
| GsuI | CTGGAG | 2 cut(s) | 956, 1436 |
| HaeII | RGCGCY | 1 cut(s) | 678 |
| HaeIII | GGCC | 1 cut(s) | 458 |
| HapII | CCGG | 1 cut(s) | 101 |
| HhaI | GCGC | 1 cut(s) | 677 |
| Hin1I | GRCGYC | 1 cut(s) | 628 |
| Hin1II | CATG | 7 cut(s) | 44, 809, 875, 962, 1052, 1199, 1358 |
| Hin6I | GCGC | 1 cut(s) | 675 |
| HinP1I | GCGC | 1 cut(s) | 675 |
| HindIII | AAGCTT | 1 cut(s) | 506 |
| HinfI | GANTC | 6 cut(s) | 477, 1454, 1613, 1631, 1703, 1799 |
| HpaII | CCGG | 1 cut(s) | 101 |
| HphI | GGTGA | 6 cut(s) | 331, 430, 626, 1463, 1649, 1666 |
| Hpy166II | GTNNAC | 1 cut(s) | 1774 |
| Hpy188I | TCNGA | 4 cut(s) | 49, 390, 585, 1714 |
| Hpy188III | TCNNGA | 3 cut(s) | 806, 872, 1355 |
| Hpy8I | GTNNAC | 1 cut(s) | 1774 |
| Hpy99I | CGWCG | 1 cut(s) | 1219 |
| HpyAV | CCTTC | 6 cut(s) | 22, 109, 424, 844, 1372, 1757 |
| HpyCH4III | ACNGT | 3 cut(s) | 68, 469, 1778 |
| HpyCH4IV | ACGT | 3 cut(s) | 186, 628, 1770 |
| HpyCH4V | TGCA | 6 cut(s) | 44, 91, 153, 240, 266, 746 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 50 |
| HpyF3I | CTNAG | 3 cut(s) | 686, 1092, 1560 |
| HpySE526I | ACGT | 3 cut(s) | 186, 628, 1770 |
| Hsp92I | GRCGYC | 1 cut(s) | 628 |
| Hsp92II | CATG | 7 cut(s) | 44, 809, 875, 962, 1052, 1199, 1358 |
| HspAI | GCGC | 1 cut(s) | 675 |
| Ksp22I | TGATCA | 1 cut(s) | 1045 |
| Kzo9I | GATC | 9 cut(s) | 293, 519, 580, 664, 898, 1045, 1144, 1381, 1645 |
| LmnI | GCTCC | 1 cut(s) | 31 |
| Lsp1109I | GCAGC | 3 cut(s) | 20, 214, 409 |
| LweI | GCATC | 9 cut(s) | 53, 78, 491, 609, 733, 1078, 1315, 1546, 1675 |
| MaeI | CTAG | 5 cut(s) | 134, 731, 1178, 1203, 1649 |
| MaeII | ACGT | 3 cut(s) | 186, 628, 1770 |
| MaeIII | GTNAC | 5 cut(s) | 656, 1208, 1268, 1637, 1790 |
| MalI | GATC | 9 cut(s) | 295, 521, 582, 666, 900, 1047, 1146, 1383, 1647 |
| MbiI | CCGCTC | 1 cut(s) | 1700 |
| MboI | GATC | 9 cut(s) | 293, 519, 580, 664, 898, 1045, 1144, 1381, 1645 |
| MflI | RGATCY | 3 cut(s) | 293, 898, 1381 |
| MhlI | GDGCHC | 1 cut(s) | 384 |
| MlyI | GAGTC | 3 cut(s) | 471, 1712, 1793 |
| MmeI | TCCRAC | 2 cut(s) | 1172, 1409 |
| Mph1103I | ATGCAT | 1 cut(s) | 46 |
| MslI | CAYNNNNRTG | 2 cut(s) | 810, 1086 |
| MspI | CCGG | 1 cut(s) | 101 |
| MspR9I | CCNGG | 1 cut(s) | 102 |
| MvnI | CGCG | 3 cut(s) | 982, 1219, 1462 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 50 |
| NciI | CCSGG | 1 cut(s) | 102 |
| NdeII | GATC | 9 cut(s) | 293, 519, 580, 664, 898, 1045, 1144, 1381, 1645 |
| NlaIII | CATG | 7 cut(s) | 44, 809, 875, 962, 1052, 1199, 1358 |
| NlaIV | GGNNCC | 3 cut(s) | 832, 900, 1383 |
| NmeAIII | GCCGAG | 1 cut(s) | 400 |
| NmuCI | GTSAC | 1 cut(s) | 1637 |
| NsiI | ATGCAT | 1 cut(s) | 46 |
| NspI | RCATGY | 1 cut(s) | 44 |
| NspV | TTCGAA | 1 cut(s) | 281 |
| PagI | TCATGA | 3 cut(s) | 805, 871, 1354 |
| PfeI | GAWTC | 3 cut(s) | 1454, 1613, 1631 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1391 |
| PkrI | GCNGC | 3 cut(s) | 10, 229, 399 |
| PleI | GAGTC | 3 cut(s) | 471, 1711, 1793 |
| PpsI | GAGTC | 3 cut(s) | 471, 1711, 1793 |
| PshBI | ATTAAT | 1 cut(s) | 1161 |
| PspN4I | GGNNCC | 3 cut(s) | 832, 900, 1383 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1764, 1796 |
| PsuI | RGATCY | 3 cut(s) | 293, 898, 1381 |
| RsaI | GTAC | 2 cut(s) | 70, 1231 |
| RsaNI | GTAC | 2 cut(s) | 69, 1230 |
| RseI | CAYNNNNRTG | 2 cut(s) | 810, 1086 |
| SatI | GCNGC | 3 cut(s) | 9, 228, 398 |
| Sau3AI | GATC | 9 cut(s) | 293, 519, 580, 664, 898, 1045, 1144, 1381, 1645 |
| SchI | GAGTC | 3 cut(s) | 471, 1712, 1793 |
| ScrFI | CCNGG | 1 cut(s) | 102 |
| SduI | GDGCHC | 1 cut(s) | 384 |
| SfaNI | GCATC | 9 cut(s) | 53, 78, 491, 609, 733, 1078, 1315, 1546, 1675 |
| SfcI | CTRYAG | 1 cut(s) | 401 |
| SfuI | TTCGAA | 1 cut(s) | 281 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 810, 1086 |
| SmlI | CTYRAG | 2 cut(s) | 892, 1329 |
| SmoI | CTYRAG | 2 cut(s) | 892, 1329 |
| SsiI | CCGC | 4 cut(s) | 982, 1219, 1462, 1700 |
| SspMI | CTAG | 5 cut(s) | 134, 731, 1178, 1203, 1649 |
| StyD4I | CCNGG | 1 cut(s) | 100 |
| StyI | CCWWGG | 2 cut(s) | 1661, 1689 |
| TaaI | ACNGT | 3 cut(s) | 68, 469, 1778 |
| TaiI | ACGT | 3 cut(s) | 189, 631, 1773 |
| TaqI | TCGA | 2 cut(s) | 281, 837 |
| TatI | WGTACW | 1 cut(s) | 1229 |
| TfiI | GAWTC | 3 cut(s) | 1454, 1613, 1631 |
| TscAI | CASTG | 7 cut(s) | 667, 916, 1000, 1090, 1327, 1558, 1783 |
| TseFI | GTSAC | 1 cut(s) | 1637 |
| TseI | GCWGC | 3 cut(s) | 8, 227, 397 |
| Tsp45I | GTSAC | 1 cut(s) | 1637 |
| TspDTI | ATGAA | 7 cut(s) | 339, 528, 663, 794, 975, 1212, 1803 |
| TspRI | CASTG | 7 cut(s) | 667, 916, 1000, 1090, 1327, 1558, 1783 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1391 |
| VspI | ATTAAT | 1 cut(s) | 1161 |
| XceI | RCATGY | 1 cut(s) | 44 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1687 |
| XmiI | GTMKAC | 1 cut(s) | 1773 |
| XspI | CTAG | 5 cut(s) | 134, 731, 1178, 1203, 1649 |
| ZraI | GACGTC | 1 cut(s) | 629 |
| Zsp2I | ATGCAT | 1 cut(s) | 46 |