Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018403

Physical Location & Seq

Genomic Coordinates Reverse (-)

68403415 .. 68405301

Gene Structure 1887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG395100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAAACAACAATTGGGAGAAAGAGGAAGGGGAGAACCCATACATCAGAAGAAGAAGAAGAGAATCGTATGCTAAAAAAGAAGATGCAAACAACACTGGGGAGAAAGAGGAAGGAGAGAACACATACATCAGAAGAAGAAGAAGAGAATTGCAGGCAAACAAAAAAAGAGAAAAGCAAAATAGACGTGAGTTTCTCCAAGAGGCGTAAAGGGTTGTTTGGTAAGGCTGCTCGTTTGTGCAAGGATTTCAATGACACACGAATTGCAGTTCTCGTGGTTTCGAAAGCAAGTAGACCTTATGCTTTTGGACACTCTTCGGTGGATGAAGTTCTCAATGATCTCTACCACATTCAACCAACAACTACTGAATCTGTCGAGGGGCTCAATCTGATGAGGCACCAACACGAGCAAAAAATGTTGATGGTTGTGAAGGAAGAGATTGAGAACGAATTGAGGGCCTGTCAAACTGTTGAGGGACTTGCGTCGTTGAGAGAAAAATACTTGAAGCTTGATGAAGATATCAAAAAGAGGTTGAGAAGTTGTTCCTCTGAAGAAATCAGTTTTGAGGGTGGTGTGATTGATCAGAAGTACAATATCGACATCATTAATGTTGGTGATGAGGAATGTTCTTTGGGGTCAAGGCATGAAAGTAACTATAATAATTTTTCAAGGGCTGGTGGTCTAAGATTAGATGGAGACACTGGTGGTGAGGGGTATTGTTCTGGGTTAGGGCATAGGGATTCAACTACTGGATTTAGGGGGTTATGGCATGAAGTAAGTGATAATTCTTTGAGGGATTCAACTACTGACATTAGGGGTAATGTTTTGTTGGCTTCAACTACAAGTAATTATGGTGTTGATGGGGATTTAAGATTAAATGGAGACATCGATGCCGAGGGATGTTCTTTAGGGTTATGGCATGAAGTCAGTGACAATGCTTTGAGGGATTCATCTACTGACATTAGTGGTAATGTTTTGTTGGCTTCAACTACAAGTAATAATGGTGTTGATGGGGATTTAAGATTAAATGGAGACATGGATGCCGAGGGATGTTCTTTAGGGTTCTGGTATGAAGTTAGTGATAATCCTTTGGGAGATTCAACTACTGACACTATTGGTAATGTTCTGTTGTCTTCAACTACAAGTAATGATGGTGGTTTAAGATTGAATGGAGGCACTGATGCTGATGAGGGATTCTCTTTAGGGTTAGGACATGAAGTTTATGGTCATGATTTATATCCCAAAGTCATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

418

Amino Acids

46.3

Weight (kDa)

5.16

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	58 - 102	1.4e-07	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33170
rosa_laevigata	RLG00000035367
rosa_multiflora	Rmu_sc0001650.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020300
rosa_rugosa	Rorug05G0330800
rosa_samantha	Rh5AG395100 Rh5BG407500 Rh5CG431200 Rh5DG422300
rosa_wichuraiana	Rw5G037160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	590
AjiI	CACGTC	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	508
AluI	AGCT	1 cut(s)	508
Alw26I	GTCTC	3 cut(s)	690, 876, 1026
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	1 cut(s)	227
AseI	ATTAAT	1 cut(s)	606
Asp700I	GAANNNNTTC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	456
AsuHPI	GGTGA	2 cut(s)	626, 719
AsuII	TTCGAA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	2 cut(s)	272, 404
BbsI	GAAGAC	1 cut(s)	1125
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	5 cut(s)	415, 686, 854, 1004, 1145
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	3 cut(s)	690, 876, 1026
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	398
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	4 cut(s)	75, 880, 1030, 1171
BmuI	ACTGGG	1 cut(s)	107
BoxI	GACNNNNGTC	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	1125
BplI	GAGNNNNNCTC	2 cut(s)	1181, 1213
Bpu14I	TTCGAA	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	1236
BsaJI	CCNNGG	2 cut(s)	894, 1044
Bse1I	ACTGG	3 cut(s)	102, 706, 754
Bse8I	GATNNNNATC	1 cut(s)	1236
BseCI	ATCGAT	1 cut(s)	888
BseDI	CCNNGG	2 cut(s)	894, 1044
BseGI	GGATG	4 cut(s)	328, 905, 1045, 1055
BseJI	GATNNNNATC	1 cut(s)	1236
BseNI	ACTGG	3 cut(s)	102, 706, 754
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	396
BshVI	ATCGAT	1 cut(s)	888
BslFI	GGGAC	1 cut(s)	489
BsmAI	GTCTC	3 cut(s)	690, 876, 1026
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	337, 580
BspANI	GGCC	1 cut(s)	458
BspDI	ATCGAT	1 cut(s)	888
BspHI	TCATGA	1 cut(s)	1228
BspLI	GGNNCC	1 cut(s)	398
BspT104I	TTCGAA	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	102, 706, 754
BssECI	CCNNGG	2 cut(s)	894, 1044
BssMI	GATC	2 cut(s)	337, 580
BssSI	CACGAG	2 cut(s)	272, 404
Bst2BI	CACGAG	2 cut(s)	272, 404
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	4 cut(s)	54, 138, 319, 429
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	683
BstF5I	GGATG	4 cut(s)	328, 905, 1045, 1055
BstKTI	GATC	2 cut(s)	340, 583
BstMAI	GTCTC	3 cut(s)	690, 876, 1026
BstMBI	GATC	2 cut(s)	337, 580
BstPAI	GACNNNNGTC	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	1125
Bsu15I	ATCGAT	1 cut(s)	888
BsuRI	GGCC	1 cut(s)	458
BsuTUI	ATCGAT	1 cut(s)	888
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	328, 905, 1045, 1055
BtsIMutI	CAGTG	4 cut(s)	95, 699, 934, 1176
Cac8I	GCNNGC	1 cut(s)	155
CciI	TCATGA	1 cut(s)	1228
Cfr13I	GGNCC	1 cut(s)	456
ClaI	ATCGAT	1 cut(s)	888
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	6 cut(s)	644, 770, 920, 1036, 1214, 1229
CviJI	RGCY	7 cut(s)	227, 382, 458, 508, 674, 833, 983
CviKI_1	RGCY	7 cut(s)	227, 382, 458, 508, 674, 833, 983
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	2 cut(s)	339, 582
DpnII	GATC	2 cut(s)	337, 580
Eam1104I	CTCTTC	4 cut(s)	54, 138, 319, 429
EarI	CTCTTC	4 cut(s)	54, 138, 319, 429
Eco24I	GRGCYC	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRV	GATATC	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	6 cut(s)	647, 773, 923, 1039, 1217, 1232
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	6 cut(s)	643, 769, 919, 1035, 1213, 1228
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	4 cut(s)	335, 912, 1052, 1062
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	458
HgaI	GACGC	1 cut(s)	471
Hin1II	CATG	6 cut(s)	647, 773, 923, 1039, 1217, 1232
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	7 cut(s)	64, 368, 740, 797, 947, 1097, 1194
HphI	GGTGA	2 cut(s)	626, 719
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	5 cut(s)	49, 133, 390, 550, 585
Hpy188III	TCNNGA	1 cut(s)	1229
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	3 cut(s)	22, 106, 424
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	88, 153, 240, 266
HpyF3I	CTNAG	1 cut(s)	683
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	6 cut(s)	647, 773, 923, 1039, 1217, 1232
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	337, 580
LpnPI	CCDG	8 cut(s)	83, 139, 472, 660, 687, 708, 735, 1051
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	4 cut(s)	75, 880, 1030, 1171
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	650, 929
MalI	GATC	2 cut(s)	339, 582
MboI	GATC	2 cut(s)	337, 580
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	7 cut(s)	12, 148, 261, 449, 661, 784, 847
MroXI	GAANNNNTTC	1 cut(s)	541
MseI	TTAA	7 cut(s)	606, 869, 875, 1019, 1025, 1160, 1255
MunI	CAATTG	1 cut(s)	12
NdeII	GATC	2 cut(s)	337, 580
NlaIII	CATG	6 cut(s)	647, 773, 923, 1039, 1217, 1232
NlaIV	GGNNCC	1 cut(s)	398
NmeAIII	GCCGAG	2 cut(s)	919, 1069
NmuCI	GTSAC	1 cut(s)	929
NspV	TTCGAA	1 cut(s)	281
PagI	TCATGA	1 cut(s)	1228
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	7 cut(s)	64, 368, 740, 797, 947, 1097, 1194
PkrI	GCNGC	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	481
PshBI	ATTAAT	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	456
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
SaqAI	TTAA	7 cut(s)	606, 869, 875, 1019, 1025, 1160, 1255
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	337, 580
Sau96I	GGNCC	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	4 cut(s)	189, 298, 510, 533
SfaNI	GCATC	4 cut(s)	75, 880, 1030, 1171
SfuI	TTCGAA	1 cut(s)	281
Sse9I	AATT	7 cut(s)	12, 148, 261, 449, 661, 784, 847
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	4 cut(s)	281, 375, 597, 888
TasI	AATT	7 cut(s)	12, 148, 261, 449, 661, 784, 847
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	7 cut(s)	64, 368, 740, 797, 947, 1097, 1194
Tru1I	TTAA	7 cut(s)	606, 869, 875, 1019, 1025, 1160, 1255
Tru9I	TTAA	7 cut(s)	606, 869, 875, 1019, 1025, 1160, 1255
TscAI	CASTG	4 cut(s)	102, 706, 934, 1183
TseFI	GTSAC	1 cut(s)	929
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	929
TspDTI	ATGAA	8 cut(s)	339, 528, 660, 786, 936, 939, 1086, 1230
TspRI	CASTG	4 cut(s)	102, 706, 934, 1183
VspI	ATTAAT	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.