Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008513

Physical Location & Seq

Genomic Coordinates Reverse (-)

39930917 .. 39934480

Gene Structure 3564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGATGCAGGTCTCAATGGAACCAAAGCTGTTGCTTTCTTCAACCACAGCCTTACCAGCAACTTCCTTACCCTTTTTTCTTTCATACAAGTCTCCTTTTCATTTAAGATCCAAACAGTCTGTGAAAACCCATCTCTCAATCTCAAGGATACAGCTGGAAAAATCAAACTTTTGGGGAAATAGTTTGGTTTTACCTGAGAGAGATGTTATTTTGGGTGATTTGAGACATGTCCCAGTTGGACCGATACGTGCTGCTGTGAAGAGAAGGAAAGAACTTCCTTTCGACAATGTGATCCAAAGGGATAAGAAGTTGAAGTTAGTTTTGAAGATTAGAAAAATTTTAGTGAGCCAACCTGATAGAATTATGTCACTTAGGGAATTAGGTAGGTATAGAAGAGAACTGGGTCTGCAGAAAAAGAGGCGATTTATTGCATTATTGAAGAAGTTCCCTGCTGTGTTTGAGATTGTTGAAGAAGGTGTATTTTCGTTGAAATTTAAATTAACGCCCGAAGCAGAAAGGCTTTATCTTGAAGAGTTGCAGGTTCGAAATGAGATGGAAGACTTGCTGGTCGTGAAGTTGAGGAAATTATTGATGATGTCATTGGATAAACGGATTTTGTTGGAGAAGATTGCTCATTTAAGGACCGATTTAGCGCTTCCTTTAGAATTTCGTGATACAATTTGTCATCGATACCCACAGTATTTTAAAGTTGTTGCAACTGCGAGAGGTCCAGCATTAGAATTAACTCATTGGGATCCTGAGCTTGCTGTATCAGCTGCTGAGTTATCTGAAGAGGAAAATCGTGCTAGAGAATTAGAAGAGAAGGATTTGATTATAGATAGGCCTCTCAAGTTCAATAGACTAAAGTTACCAAGGGGTCTTAATCTTTCCAAGGGTGAGATGAGGAGAATATGTTTGTTTAGAGACATCCCTTATATATCCCCTTACTCTGATTTCTCAGGGCTGAGGTCAGGTACAATTGAGAAAGAGAAACATGCTTGTGCAGTTGTCCATGAGATATTGAGCCTTACTGTGGAGAAGAAAACTCTTGTAGATCACCTTACTCATTTCCGCGAGGAGTTTAGGTTCTCTCAACAGGTCAGGGGAATGCTGATAAGGCACCCTGATATGTTTTATGTCTCGTTGAAAGGAGATAGGGATTCAGTTTTCCTTAGGGAAGCATATCGTGATTCTCAATTGATAGACAAGGATCGTCTGCTGATTATAAAAGAGAAGCTTCGATCTATTATTGCAGTTCCACGGTATCCTAGAAGGGGTGCTCCCAATAGAGAGGCAGATGGTGCTGAAGGAACCAATGAGGCACAAGATGGAACTGTTGATGAGGGAGAGGAATGGTCTGATACTGATAACTTTATGAGTGATGAAGATGATGAGTTTGATGATGATGATGATGATGTAGATGATTGGAGTGATGAAGATGAAGATACACCCCCAGATTTCAACGAAGATGGGAAAACATTAAACAATGAACCGAGCAAACCAATTAATGAAGAAGGCTTTTCAACAGAGAATGATGAGAGGGTGCTTGTTCCAGTCTTGCCAGATGGTCGGCCAAGAGAGCGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

529

Amino Acids

61.57

Weight (kDa)

5.84

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	90 - 417	1.2e-106	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07960 AT1G07960 AT1G07960 AT1G07960
fragaria_vesca	FvH4_3g33160 FvH4_3g33160
malus_domestica	MD03G1105000.v1.1 MD11G1130500.v1.1
prunus_persica	Prupe.6G095100_v2.0.a1
pyrus_communis	pycom11g10810
rosa_chinensis	RchiOBHm_Chr5g0060481
rosa_laevigata	RLG00000035366
rosa_multiflora	Rmu_sc0012322.1_g000012 Rmu_sc0032329.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020310
rosa_rugosa	Rorug05G0330600 Rorug05G0330700 Rorug05G0330800
rosa_samantha	Rh5AG395000 Rh5BG407400 Rh5CG431100 Rh5DG422200
rosa_wichuraiana	Rw5G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1226
AasI	GACNNNNNNGTC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	1119
AccII	CGCG	1 cut(s)	1074
AciI	CCGC	1 cut(s)	1072
AclWI	GGATC	5 cut(s)	102, 286, 749, 762, 1218
AcoI	YGGCCR	1 cut(s)	1571
AcsI	RAATTY	3 cut(s)	336, 491, 665
AcuI	CTGAAG	2 cut(s)	810, 1326
AfaI	GTAC	1 cut(s)	976
AfeI	AGCGCT	2 cut(s)	654, 1583
AfiI	CCNNNNNNNGG	2 cut(s)	1033, 1274
AflIII	ACRYGT	1 cut(s)	226
AloI	GAACNNNNNNTCC	2 cut(s)	1070, 1102
AluBI	AGCT	5 cut(s)	28, 154, 763, 776, 1237
AluI	AGCT	5 cut(s)	28, 154, 763, 776, 1237
Alw21I	GWGCWC	1 cut(s)	1282
Alw26I	GTCTC	5 cut(s)	16, 96, 217, 918, 1144
AlwI	GGATC	5 cut(s)	102, 286, 749, 762, 1218
AlwNI	CAGNNNCTG	1 cut(s)	779
Aor51HI	AGCGCT	2 cut(s)	654, 1583
AoxI	GGCC	2 cut(s)	842, 1571
ApeKI	GCWGC	2 cut(s)	251, 776
ApoI	RAATTY	3 cut(s)	336, 491, 665
AseI	ATTAAT	1 cut(s)	1506
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	655, 1584
AspS9I	GGNCC	3 cut(s)	239, 642, 728
AsuHPI	GGTGA	3 cut(s)	227, 908, 1049
AsuII	TTCGAA	1 cut(s)	544
AvaII	GGWCC	3 cut(s)	239, 642, 728
AxyI	CCTNAGG	1 cut(s)	1172
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	1119
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	1282
BbvCI	CCTCAGC	1 cut(s)	965
BbvI	GCAGC	2 cut(s)	238, 763
BccI	CCATC	6 cut(s)	138, 547, 1292, 1322, 1463, 1559
BciVI	GTATCC	2 cut(s)	141, 1275
BcoDI	GTCTC	5 cut(s)	16, 96, 217, 918, 1144
BfaI	CTAG	2 cut(s)	807, 1269
BfmI	CTRYAG	1 cut(s)	407
BfoI	RGCGCY	2 cut(s)	656, 1585
BfuAI	ACCTGC	1 cut(s)	529
BfuI	GTATCC	2 cut(s)	141, 1275
BisI	GCNGC	2 cut(s)	252, 777
BlsI	GCNGC	2 cut(s)	253, 778
Bme18I	GGWCC	3 cut(s)	239, 642, 728
BmgT120I	GGNCC	3 cut(s)	239, 642, 728
BmiI	GGNNCC	4 cut(s)	21, 756, 1121, 1312
BmrI	ACTGGG	2 cut(s)	227, 410
BmuI	ACTGGG	2 cut(s)	227, 410
BpiI	GAAGAC	1 cut(s)	564
Bpu10I	CCTNAGC	2 cut(s)	759, 965
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	2 cut(s)	127, 833
Bsa29I	ATCGAT	1 cut(s)	688
BsaAI	YACGTR	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	872, 891, 1259
BsaXI	ACNNNNNCTCC	4 cut(s)	898, 928, 1070, 1100
Bsc4I	CCNNNNNNNGG	2 cut(s)	1033, 1274
Bse1I	ACTGG	3 cut(s)	233, 405, 1553
Bse21I	CCTNAGG	1 cut(s)	1172
BseCI	ATCGAT	1 cut(s)	688
BseDI	CCNNGG	3 cut(s)	872, 891, 1259
BseGI	GGATG	1 cut(s)	927
BseLI	CCNNNNNNNGG	2 cut(s)	1033, 1274
BseMII	CTCAG	5 cut(s)	186, 750, 771, 956, 972
BseNI	ACTGG	3 cut(s)	233, 405, 1553
BseRI	GAGGAG	2 cut(s)	919, 1091
BseXI	GCAGC	2 cut(s)	238, 763
BsgI	GTGCAG	1 cut(s)	1023
Bsh1236I	CGCG	1 cut(s)	1074
BshFI	GGCC	2 cut(s)	844, 1573
BshNI	GGYRCC	1 cut(s)	1119
BshVI	ATCGAT	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	1282
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	1033, 1274
BsmAI	GTCTC	5 cut(s)	16, 96, 217, 918, 1144
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	1113
BsnI	GGCC	2 cut(s)	844, 1573
Bso31I	GGTCTC	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	1282
Bsp143I	GATC	6 cut(s)	107, 291, 754, 1054, 1210, 1241
BspACI	CCGC	1 cut(s)	1072
BspANI	GGCC	2 cut(s)	844, 1573
BspCNI	CTCAG	5 cut(s)	187, 751, 772, 957, 971
BspDI	ATCGAT	1 cut(s)	688
BspFNI	CGCG	1 cut(s)	1074
BspLI	GGNNCC	4 cut(s)	21, 756, 1121, 1312
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	5 cut(s)	102, 286, 749, 762, 1218
BspT104I	TTCGAA	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	1119
BspTNI	GGTCTC	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	233, 405, 1553
BssECI	CCNNGG	3 cut(s)	872, 891, 1259
BssMI	GATC	6 cut(s)	107, 291, 754, 1054, 1210, 1241
BssT1I	CCWWGG	2 cut(s)	872, 891
Bst4CI	ACNGT	5 cut(s)	117, 699, 1033, 1263, 1336
Bst6I	CTCTTC	5 cut(s)	254, 388, 525, 786, 813
BstAPI	GCANNNNNTGC	1 cut(s)	1301
BstBAI	YACGTR	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	7 cut(s)	195, 371, 759, 780, 958, 965, 1172
BstDSI	CCRYGG	1 cut(s)	1259
BstF5I	GGATG	1 cut(s)	927
BstFNI	CGCG	1 cut(s)	1074
BstH2I	RGCGCY	2 cut(s)	656, 1585
BstHHI	GCGC	2 cut(s)	655, 1584
BstKTI	GATC	6 cut(s)	110, 294, 757, 1057, 1213, 1244
BstMAI	GTCTC	5 cut(s)	16, 96, 217, 918, 1144
BstMBI	GATC	6 cut(s)	107, 291, 754, 1054, 1210, 1241
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 773, 1117, 1301, 1579
BstNSI	RCATGY	2 cut(s)	230, 998
BstSFI	CTRYAG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	1074
BstV1I	GCAGC	2 cut(s)	238, 763
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	2 cut(s)	107, 754
BstYI	RGATCY	2 cut(s)	107, 754
Bsu15I	ATCGAT	1 cut(s)	688
Bsu36I	CCTNAGG	1 cut(s)	1172
BsuI	GTATCC	2 cut(s)	141, 1275
BsuRI	GGCC	2 cut(s)	844, 1573
BsuTUI	ATCGAT	1 cut(s)	688
BtgI	CCRYGG	1 cut(s)	1259
BtsCI	GGATG	1 cut(s)	927
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	765
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	2 cut(s)	655, 1584
Cfr13I	GGNCC	3 cut(s)	239, 642, 728
ClaI	ATCGAT	1 cut(s)	688
Csp6I	GTAC	1 cut(s)	975
CviAII	CATG	3 cut(s)	227, 995, 1013
CviQI	GTAC	1 cut(s)	975
DdeI	CTNAG	7 cut(s)	195, 371, 759, 780, 958, 965, 1172
DpnI	GATC	6 cut(s)	109, 293, 756, 1056, 1212, 1243
DpnII	GATC	6 cut(s)	107, 291, 754, 1054, 1210, 1241
DraI	TTTAAA	2 cut(s)	496, 706
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	1571
Eam1104I	CTCTTC	5 cut(s)	254, 388, 525, 786, 813
EarI	CTCTTC	5 cut(s)	254, 388, 525, 786, 813
Eco130I	CCWWGG	2 cut(s)	872, 891
Eco147I	AGGCCT	1 cut(s)	844
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	3 cut(s)	239, 642, 728
Eco47III	AGCGCT	2 cut(s)	654, 1583
Eco57I	CTGAAG	2 cut(s)	810, 1326
Eco81I	CCTNAGG	1 cut(s)	1172
EcoT14I	CCWWGG	2 cut(s)	872, 891
ErhI	CCWWGG	2 cut(s)	872, 891
FaeI	CATG	3 cut(s)	230, 998, 1016
FalI	AAGNNNNNCTT	2 cut(s)	1221, 1253
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	226, 994, 1012
Fnu4HI	GCNGC	2 cut(s)	252, 777
FokI	GGATG	1 cut(s)	914
Fsp4HI	GCNGC	2 cut(s)	252, 777
FspBI	CTAG	2 cut(s)	807, 1269
GlaI	GCGC	2 cut(s)	654, 1583
GluI	GCNGC	2 cut(s)	252, 777
HaeII	RGCGCY	2 cut(s)	656, 1585
HaeIII	GGCC	2 cut(s)	844, 1573
HhaI	GCGC	2 cut(s)	655, 1584
Hin1II	CATG	3 cut(s)	230, 998, 1016
Hin6I	GCGC	2 cut(s)	653, 1582
HinP1I	GCGC	2 cut(s)	653, 1582
HindIII	AAGCTT	1 cut(s)	1235
HinfI	GANTC	2 cut(s)	1160, 1190
HphI	GGTGA	3 cut(s)	227, 908, 1049
Hpy188I	TCNGA	3 cut(s)	790, 952, 1360
Hpy188III	TCNNGA	5 cut(s)	527, 571, 671, 758, 1187
HpyAV	CCTTC	6 cut(s)	258, 467, 817, 1266, 1301, 1508
HpyCH4III	ACNGT	5 cut(s)	117, 699, 1033, 1263, 1336
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	7 cut(s)	7, 409, 431, 538, 716, 1004, 1253
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 773, 1117, 1301, 1579
HpyF3I	CTNAG	7 cut(s)	195, 371, 759, 780, 958, 965, 1172
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	230, 998, 1016
HspAI	GCGC	2 cut(s)	653, 1582
Kzo9I	GATC	6 cut(s)	107, 291, 754, 1054, 1210, 1241
LmnI	GCTCC	1 cut(s)	1285
Lsp1109I	GCAGC	2 cut(s)	238, 763
MaeI	CTAG	2 cut(s)	807, 1269
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	366, 867
MalI	GATC	6 cut(s)	109, 293, 756, 1056, 1212, 1243
MboI	GATC	6 cut(s)	107, 291, 754, 1054, 1210, 1241
MfeI	CAATTG	2 cut(s)	978, 1196
MflI	RGATCY	2 cut(s)	107, 754
MhlI	GDGCHC	1 cut(s)	1282
MmeI	TCCRAC	2 cut(s)	217, 600
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	9 cut(s)	104, 495, 500, 638, 705, 743, 882, 1481, 1506
MslI	CAYNNNNRTG	1 cut(s)	999
MspA1I	CMGCKG	2 cut(s)	154, 776
MunI	CAATTG	2 cut(s)	978, 1196
Mva1269I	GAATGC	1 cut(s)	1113
MvnI	CGCG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	5 cut(s)	56, 773, 1117, 1301, 1579
NdeII	GATC	6 cut(s)	107, 291, 754, 1054, 1210, 1241
NlaIII	CATG	3 cut(s)	230, 998, 1016
NlaIV	GGNNCC	4 cut(s)	21, 756, 1121, 1312
NmuCI	GTSAC	1 cut(s)	366
NspI	RCATGY	2 cut(s)	230, 998
NspV	TTCGAA	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	844
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	1113
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	1160, 1190
PkrI	GCNGC	2 cut(s)	253, 778
Ppu21I	YACGTR	1 cut(s)	248
PscI	ACATGT	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	1506
PsiI	TTATAA	1 cut(s)	1226
PspN4I	GGNNCC	4 cut(s)	21, 756, 1121, 1312
PspPI	GGNCC	3 cut(s)	239, 642, 728
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	2 cut(s)	107, 754
PvuII	CAGCTG	2 cut(s)	154, 776
RsaI	GTAC	1 cut(s)	976
RsaNI	GTAC	1 cut(s)	975
RseI	CAYNNNNRTG	1 cut(s)	999
SaqAI	TTAA	9 cut(s)	104, 495, 500, 638, 705, 743, 882, 1481, 1506
SatI	GCNGC	2 cut(s)	252, 777
Sau3AI	GATC	6 cut(s)	107, 291, 754, 1054, 1210, 1241
Sau96I	GGNCC	3 cut(s)	239, 642, 728
SduI	GDGCHC	1 cut(s)	1282
SfcI	CTRYAG	1 cut(s)	407
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	3 cut(s)	239, 642, 728
SmiI	ATTTAAAT	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	999
SmlI	CTYRAG	2 cut(s)	142, 848
SmoI	CTYRAG	2 cut(s)	142, 848
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	1 cut(s)	1072
SspMI	CTAG	2 cut(s)	807, 1269
StuI	AGGCCT	1 cut(s)	844
StyI	CCWWGG	2 cut(s)	872, 891
SwaI	ATTTAAAT	1 cut(s)	496
TaaI	ACNGT	5 cut(s)	117, 699, 1033, 1263, 1336
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	4 cut(s)	282, 544, 688, 1240
TaqII	GACCGA	2 cut(s)	256, 659
TfiI	GAWTC	2 cut(s)	1160, 1190
Tru1I	TTAA	9 cut(s)	104, 495, 500, 638, 705, 743, 882, 1481, 1506
Tru9I	TTAA	9 cut(s)	104, 495, 500, 638, 705, 743, 882, 1481, 1506
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	2 cut(s)	251, 776
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	7 cut(s)	72, 89, 1398, 1449, 1455, 1503, 1524
TspGWI	ACGGA	1 cut(s)	625
VpaK11BI	GGWCC	3 cut(s)	239, 642, 728
VspI	ATTAAT	1 cut(s)	1506
XapI	RAATTY	3 cut(s)	336, 491, 665
XceI	RCATGY	2 cut(s)	230, 998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1581
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	2 cut(s)	807, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.