Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032329.1

Orthogroup ID

OG0008513

Physical Location & Seq

Genomic Coordinates Forward (+)

4073 .. 6313

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032329.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgaaaacccagttagcagcttctctaattttcacgtcccttcttcttttccttctcccaagtttaacaattcataccaaagctgaggttataaccctaactgctgacacattctccgacaaggtgaaggagaaagacactgcatggtttgtcaagttctgtgtaccatggtgtaaacattgtaagaacttggggtctttgtgggaggattttgggaaggcagtggaaagcgaagacgaaatagaggttggggaagtggattgcagtacgagtaaaccagtgtgctcgaaagttgatattcattcttatcctacatttaagctattctttgatggagaagaagttgccaaatatcaagggccgagggatgttgcatcactcaagaattttgtcttagaccaggctgaagaagcagcaagaaaggcacatcttggcagtgataaagagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

150

Amino Acids

16.79

Weight (kDa)

5.22

Isoelectric Point (pI)

19.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07960 AT1G07960 AT1G07960 AT1G07960
fragaria_vesca	FvH4_3g33160 FvH4_3g33160
malus_domestica	MD03G1105000.v1.1 MD11G1130500.v1.1
prunus_persica	Prupe.6G095100_v2.0.a1
pyrus_communis	pycom11g10810
rosa_chinensis	RchiOBHm_Chr5g0060481
rosa_laevigata	RLG00000035366
rosa_multiflora	Rmu_sc0012322.1_g000012 Rmu_sc0032329.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020310
rosa_rugosa	Rorug05G0330600 Rorug05G0330700 Rorug05G0330800
rosa_samantha	Rh5AG395000 Rh5BG407400 Rh5CG431100 Rh5DG422200
rosa_wichuraiana	Rw5G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	2 cut(s)	165, 268
AjiI	CACGTC	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	3 cut(s)	20, 83, 322
AluI	AGCT	3 cut(s)	20, 83, 322
Alw21I	GWGCWC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	17, 413
ApoI	RAATTY	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	287
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	29, 425
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	401
BisI	GCNGC	2 cut(s)	18, 414
BlsI	GCNGC	2 cut(s)	19, 415
Bme1390I	CCNGG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	167, 362
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 327, 357
Bse1I	ACTGG	2 cut(s)	10, 278
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	167, 362
BseGI	GGATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	10, 278
BseXI	GCAGC	2 cut(s)	29, 425
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp19I	CCATGG	1 cut(s)	167
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	10, 278
BssECI	CCNNGG	2 cut(s)	167, 362
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	84, 394
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 422
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	29, 425
BstV2I	GAAGAC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	3 cut(s)	138, 228, 442
BtsIMutI	CAGTG	4 cut(s)	138, 228, 285, 442
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	164, 267
CviAII	CATG	2 cut(s)	144, 168
CviJI	RGCY	5 cut(s)	20, 83, 322, 361, 404
CviKI_1	RGCY	5 cut(s)	20, 83, 322, 361, 404
CviQI	GTAC	2 cut(s)	164, 267
DdeI	CTNAG	2 cut(s)	84, 394
Eco130I	CCWWGG	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	2 cut(s)	147, 171
FaiI	YATR	4 cut(s)	75, 92, 145, 169
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	143, 167
Fnu4HI	GCNGC	2 cut(s)	18, 414
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	18, 414
GluI	GCNGC	2 cut(s)	18, 414
HaeIII	GGCC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	147, 171
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	164, 176, 275
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	3 cut(s)	164, 176, 275
HpyAV	CCTTC	4 cut(s)	50, 62, 121, 211
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	143, 264, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 422
HpyF3I	CTNAG	2 cut(s)	84, 394
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	147, 171
LpnPI	CCDG	4 cut(s)	23, 291, 386, 413
Lsp1109I	GCAGC	2 cut(s)	29, 425
LweI	GCATC	1 cut(s)	383
MaeII	ACGT	1 cut(s)	35
MboII	GAAGA	4 cut(s)	35, 245, 350, 419
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	3 cut(s)	27, 69, 385
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	79, 199, 238, 357
MseI	TTAA	2 cut(s)	65, 318
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	410, 422
NcoI	CCATGG	1 cut(s)	167
NlaIII	CATG	2 cut(s)	147, 171
NmeAIII	GCCGAG	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	19, 415
PsiI	TTATAA	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	359
RsaI	GTAC	2 cut(s)	165, 268
RsaNI	GTAC	2 cut(s)	164, 267
SaqAI	TTAA	2 cut(s)	65, 318
SatI	GCNGC	2 cut(s)	18, 414
Sau96I	GGNCC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	7 cut(s)	22, 38, 85, 90, 126, 249, 324
SfaNI	GCATC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	3 cut(s)	27, 69, 385
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	167
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	287
TasI	AATT	3 cut(s)	27, 69, 385
Tru1I	TTAA	2 cut(s)	65, 318
Tru9I	TTAA	2 cut(s)	65, 318
TscAI	CASTG	4 cut(s)	145, 228, 285, 442
TseI	GCWGC	2 cut(s)	17, 413
TspDTI	ATGAA	3 cut(s)	17, 62, 290
TspRI	CASTG	4 cut(s)	145, 228, 285, 442
XapI	RAATTY	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.