Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008513

Physical Location & Seq

Genomic Coordinates Forward (+)

6603587 .. 6606702

Gene Structure 3116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G095100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAAACCCACTCTGCTTCTCTAATTTTAATGTCAGCTCTTCTCTTTCTTCTTCTAAGTCTAACAATTCATACCGGAGCCGAGGTTATAACCCTAACCGCTGACACCTTCTCCGATAAGGTGAAGGAGAAAGATACTGCATGGTTTGTGAAATTTTGTGTACCATGGTGTAAACATTGTAAGAATTTAGGGTCGTTGTGGGAGGACCTTGGGAAGGTAATTGAAGGCGAAGATGAAATAGAGATTGGGGAAGTTGATTGCAGCACAAGTAAACCAGTATGTTCAAAAGTTGACATTCATTCATATCCTACGTTTAAGCTATTCTATGATGGAGAAGAAGTTGCAAAATATCAGGGGCCGAGGGATGTTGAATCACTTAAGACTTTTGTCTTAGAAGAAGCTGAAAAGGCAGCTACAAAGTCACAGCTTGACAGTGATAAAGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

150

Amino Acids

16.68

Weight (kDa)

4.9

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07960 AT1G07960 AT1G07960 AT1G07960
fragaria_vesca	FvH4_3g33160 FvH4_3g33160
malus_domestica	MD03G1105000.v1.1 MD11G1130500.v1.1
prunus_persica	Prupe.6G095100_v2.0.a1
pyrus_communis	pycom11g10810
rosa_chinensis	RchiOBHm_Chr5g0060481
rosa_laevigata	RLG00000035366
rosa_multiflora	Rmu_sc0012322.1_g000012 Rmu_sc0032329.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020310
rosa_rugosa	Rorug05G0330600 Rorug05G0330700 Rorug05G0330800
rosa_samantha	Rh5AG395000 Rh5BG407400 Rh5CG431100 Rh5DG422200
rosa_wichuraiana	Rw5G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AciI	CCGC	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	152, 184
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	224, 285, 371
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	5 cut(s)	38, 319, 401, 413, 427
AluI	AGCT	5 cut(s)	38, 319, 401, 413, 427
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	261, 410
ApoI	RAATTY	2 cut(s)	152, 184
AspS9I	GGNCC	2 cut(s)	205, 356
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	273, 422
BccI	CCATC	1 cut(s)	323
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	2 cut(s)	262, 411
BlsI	GCNGC	2 cut(s)	263, 412
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	205, 356
BmiI	GGNNCC	2 cut(s)	79, 357
BoxI	GACNNNNGTC	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	81, 164, 208, 359
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	6 cut(s)	69, 95, 99, 125, 324, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	275
BseDI	CCNNGG	4 cut(s)	81, 164, 208, 359
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	273, 422
BshFI	GGCC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	79, 357
BspQI	GCTCTTC	1 cut(s)	45
BspTI	CTTAAG	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	81, 164, 208, 359
BssT1I	CCWWGG	2 cut(s)	164, 208
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	377
BstDEI	CTNAG	2 cut(s)	56, 391
BstDSI	CCRYGG	1 cut(s)	164
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstPAI	GACNNNNGTC	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	273, 422
BsuRI	GGCC	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	205, 356
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	141, 165
CviJI	RGCY	7 cut(s)	38, 80, 319, 358, 401, 413, 427
CviKI_1	RGCY	7 cut(s)	38, 80, 319, 358, 401, 413, 427
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	56, 391
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	164, 208
Eco47I	GGWCC	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	164, 208
ErhI	CCWWGG	2 cut(s)	164, 208
FaeI	CATG	2 cut(s)	144, 168
FaiI	YATR	7 cut(s)	72, 89, 142, 166, 280, 304, 327
FatI	CATG	2 cut(s)	140, 164
Fnu4HI	GCNGC	2 cut(s)	262, 411
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	262, 411
GluI	GCNGC	2 cut(s)	262, 411
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	2 cut(s)	144, 168
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	4 cut(s)	161, 173, 272, 292
Hpy188I	TCNGA	1 cut(s)	115
Hpy8I	GTNNAC	4 cut(s)	161, 173, 272, 292
HpyAV	CCTTC	4 cut(s)	118, 118, 208, 218
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	3 cut(s)	140, 261, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	2 cut(s)	56, 391
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	144, 168
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	3 cut(s)	88, 288, 338
Lsp1109I	GCAGC	2 cut(s)	273, 422
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	420
MboII	GAAGA	6 cut(s)	32, 41, 44, 242, 347, 407
MluCI	AATT	6 cut(s)	24, 66, 152, 184, 219, 443
MnlI	CCTC	3 cut(s)	76, 196, 354
MseI	TTAA	3 cut(s)	29, 315, 378
MspA1I	CMGCKG	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	164
NlaIII	CATG	2 cut(s)	144, 168
NlaIV	GGNNCC	2 cut(s)	79, 357
NmeAIII	GCCGAG	2 cut(s)	106, 384
NmuCI	GTSAC	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	263, 412
PpuMI	RGGWCCY	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	386
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	79, 357
PspPI	GGNCC	2 cut(s)	205, 356
PspPPI	RGGWCCY	1 cut(s)	205
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	29, 315, 378
SatI	GCNGC	2 cut(s)	262, 411
Sau96I	GGNCC	2 cut(s)	205, 356
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	24, 66, 152, 184, 219, 443
SsiI	CCGC	1 cut(s)	99
StyI	CCWWGG	2 cut(s)	164, 208
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	314
TasI	AATT	6 cut(s)	24, 66, 152, 184, 219, 443
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	3 cut(s)	29, 315, 378
Tru9I	TTAA	3 cut(s)	29, 315, 378
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	2 cut(s)	261, 410
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	5 cut(s)	17, 59, 249, 287, 291
TspRI	CASTG	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	205
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	152, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.