Rw5G037150

Protein disulfide isomerase-like 5-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0008513
Physical Location & Seq
Reverse (-)
65462552 .. 65465516
2965 bp
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UTR
Exon/CDS
Intron
Rw5G037150.1

Sequence Viewer

Length: 453 bp
ATGAAAACCCAGTTAGCAGCTTCTCTAATTTTCACGTCCCTTCTTCTTTTCCTTCTCCCAAGTTTAACAATTCATACCAAAGCTGAGGTTATAACCCTAACTGCTGACACCTTCTCCGACAAGGTGAAGGAGAAAGACACTGCATGGTTTGTCAAGTTCTGTGTACCATGGTGTAAACATTGTAAGAACTTGGGGTCATTGTGGGAGGATTTTGGGAAGGCAGTGGAAAGCGAAGATGAAATAGAGGTTGGGGAAGTGGATTGCAGTACGAGTAAACCAGTGTGCTCGAAAGTTGATATTCATTCTTATCCTACATTTAAGCTATTCTTTGATGGAGAAGAAGTTGCCAAATATCAAGGGCTGAGGGATGTTGAATCACTCAAGAATTTTGTCTTAGATCAGGCTGAAGAAGCAGCAAGAAAGGCACATCTTGGCAGTGATAAAGAGTTGTGA

Protein Analysis

150

Amino Acids

16.87

Weight (kDa)

5.1

Isoelectric Point (pI)

22.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 30 - 131 1.2e-23 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 2 cut(s) 165, 268
AgsI TTSAA 1 cut(s) 374
AjiI CACGTC 1 cut(s) 36
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 3 cut(s) 20, 83, 322
AluI AGCT 3 cut(s) 20, 83, 322
Alw21I GWGCWC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 17, 413
ApoI RAATTY 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 287
BbvCI CCTCAGC 2 cut(s) 84, 362
BbvI GCAGC 2 cut(s) 29, 425
BccI CCATC 1 cut(s) 326
BisI GCNGC 2 cut(s) 18, 414
BlsI GCNGC 2 cut(s) 19, 415
BmgBI CACGTC 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 4
Bpu10I CCTNAGC 2 cut(s) 84, 362
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 327, 357
Bse1I ACTGG 2 cut(s) 10, 278
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 75, 353
BseNI ACTGG 2 cut(s) 10, 278
BseXI GCAGC 2 cut(s) 29, 425
BsiHKAI GWGCWC 1 cut(s) 287
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 397
Bsp19I CCATGG 1 cut(s) 167
BspCNI CTCAG 2 cut(s) 76, 354
BsrI ACTGG 2 cut(s) 10, 278
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 1 cut(s) 397
BssT1I CCWWGG 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 84, 362, 394
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 400
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 2 cut(s) 410, 422
BstV1I GCAGC 2 cut(s) 29, 425
BtgI CCRYGG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 3 cut(s) 138, 228, 442
BtsIMutI CAGTG 4 cut(s) 138, 228, 285, 442
Csp6I GTAC 2 cut(s) 164, 267
CviAII CATG 2 cut(s) 144, 168
CviJI RGCY 5 cut(s) 20, 83, 322, 361, 404
CviKI_1 RGCY 5 cut(s) 20, 83, 322, 361, 404
CviQI GTAC 2 cut(s) 164, 267
DdeI CTNAG 3 cut(s) 84, 362, 394
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 2 cut(s) 147, 171
FaiI YATR 4 cut(s) 75, 92, 145, 169
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 143, 167
Fnu4HI GCNGC 2 cut(s) 18, 414
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 18, 414
GluI GCNGC 2 cut(s) 18, 414
Hin1II CATG 2 cut(s) 147, 171
HinfI GANTC 1 cut(s) 374
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 3 cut(s) 164, 176, 275
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 3 cut(s) 164, 176, 275
HpyAV CCTTC 5 cut(s) 50, 62, 121, 121, 211
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 143, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 422
HpyF3I CTNAG 3 cut(s) 84, 362, 394
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 2 cut(s) 147, 171
Kzo9I GATC 1 cut(s) 397
LpnPI CCDG 3 cut(s) 23, 291, 386
Lsp1109I GCAGC 2 cut(s) 29, 425
MaeII ACGT 1 cut(s) 35
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 4 cut(s) 35, 245, 350, 419
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 3 cut(s) 27, 69, 385
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 4 cut(s) 79, 199, 238, 357
MseI TTAA 2 cut(s) 65, 318
MwoI GCNNNNNNNGC 2 cut(s) 410, 422
NcoI CCATGG 1 cut(s) 167
NdeII GATC 1 cut(s) 397
NlaIII CATG 2 cut(s) 147, 171
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 19, 415
PsiI TTATAA 1 cut(s) 92
RsaI GTAC 2 cut(s) 165, 268
RsaNI GTAC 2 cut(s) 164, 267
SaqAI TTAA 2 cut(s) 65, 318
SatI GCNGC 2 cut(s) 18, 414
Sau3AI GATC 1 cut(s) 397
SduI GDGCHC 1 cut(s) 287
SetI ASST 8 cut(s) 22, 38, 85, 90, 113, 126, 249, 324
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 3 cut(s) 27, 69, 385
StyI CCWWGG 1 cut(s) 167
TaiI ACGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 287
TasI AATT 3 cut(s) 27, 69, 385
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 65, 318
Tru9I TTAA 2 cut(s) 65, 318
TscAI CASTG 4 cut(s) 145, 228, 285, 442
TseI GCWGC 2 cut(s) 17, 413
TspDTI ATGAA 4 cut(s) 17, 62, 252, 290
TspRI CASTG 4 cut(s) 145, 228, 285, 442
XapI RAATTY 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.