AT1G07960

Thioredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008513
Physical Location & Seq
Forward (+)
2467145 .. 2469316
2172 bp
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UTR
Exon/CDS
Intron
AT1G07960.1

Sequence Viewer

Length: 441 bp
ATGACGCTAGGTGCTCGGCTTGTTGCTCCCATGATTATACTTCTCCTTTTTATACCGATTGAATTAGTTAAAGCGGAAGTCATTACACTGACACCAGAAACCTTTTCTGACAAGATAAAGGAGAAGGATACTGCGTGGTTCGTAAAGTTTTGTGTTCCTTGGTGTAAACACTGCAAGAAACTGGGGAATTTGTGGGAAGACTTGGGAAAAGCAATGGAGGGAGACGATGAAATTGAGGTTGGTGAAGTAGACTGTGGTACTAGCAGAGCTGTTTGCACCAAAGTTGAAATTCACTCGTATCCAACATTTATGCTATTTTACAATGGAGAAGAAGTTTCGAAATATAAAGGAAAAAGAGACGTTGAATCGCTCAAGGCTTTTGTTGTAGAGGAAACTGAAAAGGCAGCAGAAAAAGCACAGCTTGAAGACAAGGAACTGTGA

Protein Analysis

146

Amino Acids

16.57

Weight (kDa)

4.98

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 27 - 128 1.7e-24 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AciI CCGC 1 cut(s) 74
AcsI RAATTY 2 cut(s) 187, 288
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 4 cut(s) 62, 287, 365, 425
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 2 cut(s) 269, 421
AluI AGCT 2 cut(s) 269, 421
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 2 cut(s) 216, 351
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 2 cut(s) 187, 288
AsuHPI GGTGA 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 338
BbsI GAAGAC 2 cut(s) 204, 432
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 416
BciVI GTATCC 2 cut(s) 121, 309
BcoDI GTCTC 2 cut(s) 216, 351
BfaI CTAG 2 cut(s) 8, 261
BfuI GTATCC 2 cut(s) 121, 309
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
BmrI ACTGGG 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 191
BpiI GAAGAC 2 cut(s) 204, 432
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 158
BseMI GCAATG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 216, 351
BsmBI CGTCTC 2 cut(s) 216, 351
Bsp119I TTCGAA 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 16
BspACI CCGC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 254, 438
BstBI TTCGAA 1 cut(s) 338
BstMAI GTCTC 2 cut(s) 216, 351
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 416
BstV2I GAAGAC 2 cut(s) 204, 432
BsuI GTATCC 2 cut(s) 121, 309
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 86, 169
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 31
CviJI RGCY 4 cut(s) 19, 269, 377, 421
CviKI_1 RGCY 4 cut(s) 19, 269, 377, 421
CviQI GTAC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
Esp3I CGTCTC 2 cut(s) 216, 351
FaeI CATG 1 cut(s) 34
FaiI YATR 5 cut(s) 32, 38, 53, 311, 345
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 405
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 2 cut(s) 8, 261
GluI GCNGC 1 cut(s) 405
HgaI GACGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 34
HinfI GANTC 1 cut(s) 365
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 167, 250
Hpy188I TCNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 167, 250
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 254, 438
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 2 cut(s) 174, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 1 cut(s) 34
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 2 cut(s) 108, 167
Lsp1109I GCAGC 1 cut(s) 416
MaeI CTAG 2 cut(s) 8, 261
MaeII ACGT 1 cut(s) 360
MboII GAAGA 3 cut(s) 209, 341, 437
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 4 cut(s) 62, 187, 231, 288
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 3 cut(s) 211, 229, 382
MseI TTAA 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 413
NlaIII CATG 1 cut(s) 34
NspV TTCGAA 1 cut(s) 338
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 1 cut(s) 406
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 405
SduI GDGCHC 1 cut(s) 16
SetI ASST 6 cut(s) 13, 104, 240, 271, 363, 423
SfuI TTCGAA 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 4 cut(s) 62, 187, 231, 288
SsiI CCGC 1 cut(s) 74
SspMI CTAG 2 cut(s) 8, 261
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 254, 438
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 338
TasI AATT 4 cut(s) 62, 187, 231, 288
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 2 cut(s) 93, 176
TseI GCWGC 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 243
TspRI CASTG 2 cut(s) 93, 176
XapI RAATTY 2 cut(s) 187, 288
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 2 cut(s) 8, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.