Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018403

Physical Location & Seq

Genomic Coordinates Forward (+)

24640554 .. 24642308

Gene Structure 1755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1755 bp

ATGGAAACAACAATTGGGAGAAAGAGGAAGGGGAGAACCTATACATTAGAAGCCGAAGAAGAAAATCGAATGCTAAAAAAGAAGATGCAAACAAAACTGGGGAGAAAGAGGAAGGAGAGAACACATACATTAGAAGAAGAAGAAGAGAATTGCAGGCAAACAAAAAAAGAGAAGAGTAAAATAGACGTGAGTTTCTCCAAGAGGCGTAAAGGGTTGTTTGGTAAGGCTGCTCGTTTGTGCAAGGATTTCAATGACACACGAATTGCGGTTCTCGTGGTTTCGAAAGCAAGTAGACCTTATGCTTTTGGACACTCTTCGGTGGATGAAGTTCTCAATGATCTCTACCACATTCAACCAACAACTACGGAATCTGTCGAGGGGCTCAATCTGATGAGGCACCAACACGAGCAAAAAATGTTGATGGTTGTGAAGGAAGAGATTGAGAACGAATTGAGGGCCTGTCAAACTGTTGAGGGACTAGCGTCGTTGAGAGAAAAATACTTGAAGCTTGATGAAGATATCAAAAAGAGGTTGAGAAGTTGTTCCTCTGAAGAAATCAGTTTTGAGGGTGGTGTGATTGATCAGAAGTACAATATCGACATCATCAATGTTGGTGATGAGGAATGTTCTTTGGGGTCAAGGCATGAAAGTAACTATAATAATTTTTCAAGGGCTGGTGGTCTAAGATTAGATGGAGACACTGGTGGTGAGGGGTATTGTTCTGGGTTAGGGCATAGGGATTCAACTACTGGATTTCGGGGTAATTCTTTGCTGGCTTCAACTGAAAGTGATTGTGGTATTCATAATGATGGTTTTACAATAAATGGAGACATTGATGGTGATGGATGTTCTTTAAGGTTATGGCATGATGTTGGTGATAATTCTTTGCTAGCTTCAACTAACTATTCTGTTAATGATGGTGGGTTAGGGTTAGGGCGTGAAGTTAGTGGTAATTCTTTGAGGGATTTAACTACTGGCATTAATGGTAATTCTTTGTGTTCAACTACAAGTAATTATGGTGATGATGGGGGTTTAAGATTAAATGGAGATATTAATGGAGACGGTTGTTCTTTAGGGTTATGGCATGAAGTAAGTGATTTGAGGGATTCAACTACTGACATTAGGGGTAATGTTTTGTTGGCTTCAACTACAAGTAATTATGGTGTTGATGGGCATTTAAGATTAAATGGAGACATCGATGCCGAGGGATGTTCTTTAGGGTTATGGCATGAAGTCAGTGACAATCCTTTGAGGGATTCATCTACTGACATTAGTGGTAATGTTTTGTTGGCTTCAACTACAAGTAATGTTGATGGGGATTTAAGATTAAATGGAGACATGGATGCCAAGGGATGTTCTTTAGGGTTCTGGCATGAAGTTAGTGATAATCCTTTGGGGGATTCAACTACTGACACTATTGGTAATGTTCTGTTGGCTTCAACTACAAGTAATGATGGTGTTGATGGTGGTTTAAGATTGAATGGAGGCATTGATGCTGATGAGGGATTCTCTTTAGGGTTAGGACATGAAGTTTATGGTAATTCTTTGGGGGATTTTAAAATTTCTGGTGACTTTGATGATTCACCTCTAGCTTGGGTTTGTTCTTCTTCCAATGGTGCCTTGGAGACGTTGGAGTCATTATCAGATTTTGTGCAATCCAATACCAACAAGGGATGTCATAGCTACTTGATGGAACTCATGGAAGGAGACATAGACAGCGGTCCTCACAGTTACCAGGACTCATGTAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

584

Amino Acids

63.5

Weight (kDa)

4.8

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	58 - 102	2.2e-07	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33170
rosa_laevigata	RLG00000035367
rosa_multiflora	Rmu_sc0001650.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020300
rosa_rugosa	Rorug05G0330800
rosa_samantha	Rh5AG395100 Rh5BG407500 Rh5CG431200 Rh5DG422300
rosa_wichuraiana	Rw5G037160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1633
AccB1I	GGYRCC	2 cut(s)	396, 1616
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	2 cut(s)	266, 1719
AcsI	RAATTY	1 cut(s)	1560
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	590
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	1734
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	508, 893, 1592, 1683
AluI	AGCT	4 cut(s)	508, 893, 1592, 1683
Alw26I	GTCTC	7 cut(s)	690, 822, 1053, 1185, 1329, 1619, 1701
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	1560
AseI	ATTAAT	2 cut(s)	981, 1053
Asp700I	GAANNNNTTC	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	456, 1721
AsuHPI	GGTGA	7 cut(s)	626, 719, 851, 887, 1031, 1575, 1580
AsuII	TTCGAA	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	889
AvaII	GGWCC	1 cut(s)	1721
BanI	GGYRCC	2 cut(s)	396, 1616
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	2 cut(s)	272, 404
BbvI	GCAGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	1736
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	7 cut(s)	690, 822, 1053, 1185, 1329, 1619, 1701
BfaI	CTAG	3 cut(s)	479, 890, 1589
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	1736
Bme18I	GGWCC	1 cut(s)	1721
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	456, 1721
BmiI	GGNNCC	2 cut(s)	398, 1618
BmrFI	CCNGG	1 cut(s)	1736
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	4 cut(s)	75, 1189, 1333, 1483
BmtI	GCTAGC	1 cut(s)	893
BmuI	ACTGGG	1 cut(s)	107
BoxI	GACNNNNGTC	2 cut(s)	481, 1719
BplI	GAGNNNNNCTC	2 cut(s)	1493, 1525
Bpu14I	TTCGAA	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	1197
BsaJI	CCNNGG	3 cut(s)	1203, 1347, 1620
Bse1I	ACTGG	4 cut(s)	102, 706, 754, 979
BseBI	CCWGG	1 cut(s)	1736
BseCI	ATCGAT	1 cut(s)	1197
BseDI	CCNNGG	3 cut(s)	1203, 1347, 1620
BseGI	GGATG	6 cut(s)	328, 851, 1214, 1348, 1358, 1679
BseNI	ACTGG	4 cut(s)	102, 706, 754, 979
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	2 cut(s)	396, 1616
BshVI	ATCGAT	1 cut(s)	1197
BslFI	GGGAC	1 cut(s)	489
BsmAI	GTCTC	7 cut(s)	690, 822, 1053, 1185, 1329, 1619, 1701
BsmBI	CGTCTC	2 cut(s)	1053, 1619
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	337, 580
BspACI	CCGC	2 cut(s)	266, 1719
BspANI	GGCC	1 cut(s)	458
BspDI	ATCGAT	1 cut(s)	1197
BspLI	GGNNCC	2 cut(s)	398, 1618
BspOI	GCTAGC	1 cut(s)	893
BspT104I	TTCGAA	1 cut(s)	281
BspT107I	GGYRCC	2 cut(s)	396, 1616
BsrI	ACTGG	4 cut(s)	102, 706, 754, 979
BssECI	CCNNGG	3 cut(s)	1203, 1347, 1620
BssMI	GATC	2 cut(s)	337, 580
BssSI	CACGAG	2 cut(s)	272, 404
BssT1I	CCWWGG	2 cut(s)	1347, 1620
Bst2BI	CACGAG	2 cut(s)	272, 404
Bst2UI	CCWGG	1 cut(s)	1736
Bst4CI	ACNGT	3 cut(s)	469, 1064, 1730
Bst6I	CTCTTC	4 cut(s)	138, 167, 319, 429
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	155, 774, 891
BstDEI	CTNAG	1 cut(s)	683
BstF5I	GGATG	6 cut(s)	328, 851, 1214, 1348, 1358, 1679
BstKTI	GATC	2 cut(s)	340, 583
BstMAI	GTCTC	7 cut(s)	690, 822, 1053, 1185, 1329, 1619, 1701
BstMBI	GATC	2 cut(s)	337, 580
BstNI	CCWGG	1 cut(s)	1736
BstPAI	GACNNNNGTC	2 cut(s)	481, 1719
BstSCI	CCNGG	1 cut(s)	1734
BstV1I	GCAGC	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	1197
BsuRI	GGCC	1 cut(s)	458
BsuTUI	ATCGAT	1 cut(s)	1197
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	6 cut(s)	328, 851, 1214, 1348, 1358, 1679
BtsIMutI	CAGTG	2 cut(s)	699, 1243
Cac8I	GCNNGC	3 cut(s)	155, 774, 891
Cfr13I	GGNCC	2 cut(s)	456, 1721
ClaI	ATCGAT	1 cut(s)	1197
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	9 cut(s)	644, 866, 1085, 1229, 1339, 1373, 1526, 1699, 1743
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	2 cut(s)	339, 582
DpnII	GATC	2 cut(s)	337, 580
DraI	TTTAAA	1 cut(s)	1558
DrdI	GACNNNNNNGTC	1 cut(s)	1633
DseDI	GACNNNNNNGTC	1 cut(s)	1633
Eam1104I	CTCTTC	4 cut(s)	138, 167, 319, 429
EarI	CTCTTC	4 cut(s)	138, 167, 319, 429
Eco130I	CCWWGG	2 cut(s)	1347, 1620
Eco24I	GRGCYC	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	1721
Eco57I	CTGAAG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	1734
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	1347, 1620
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	1347, 1620
Esp3I	CGTCTC	2 cut(s)	1053, 1619
FaeI	CATG	9 cut(s)	647, 869, 1088, 1232, 1342, 1376, 1529, 1702, 1746
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	9 cut(s)	643, 865, 1084, 1228, 1338, 1372, 1525, 1698, 1742
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	6 cut(s)	335, 858, 1221, 1355, 1365, 1686
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	3 cut(s)	479, 890, 1589
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	458
HgaI	GACGC	1 cut(s)	471
Hin1II	CATG	9 cut(s)	647, 869, 1088, 1232, 1342, 1376, 1529, 1702, 1746
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	9 cut(s)	368, 740, 1106, 1256, 1400, 1506, 1580, 1634, 1739
HphI	GGTGA	7 cut(s)	626, 719, 851, 887, 1031, 1575, 1580
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	390, 550, 585, 1645
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	4 cut(s)	22, 106, 424, 1697
HpyCH4III	ACNGT	3 cut(s)	469, 1064, 1730
HpyCH4IV	ACGT	2 cut(s)	186, 1628
HpyCH4V	TGCA	4 cut(s)	88, 153, 240, 1654
HpyF3I	CTNAG	1 cut(s)	683
HpySE526I	ACGT	2 cut(s)	186, 1628
Hsp92II	CATG	9 cut(s)	647, 869, 1088, 1232, 1342, 1376, 1529, 1702, 1746
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	337, 580
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	4 cut(s)	75, 1189, 1333, 1483
MaeI	CTAG	3 cut(s)	479, 890, 1589
MaeII	ACGT	2 cut(s)	186, 1628
MaeIII	GTNAC	5 cut(s)	650, 1238, 1568, 1730, 1745
MalI	GATC	2 cut(s)	339, 582
MboI	GATC	2 cut(s)	337, 580
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	1643, 1733
MmeI	TCCRAC	1 cut(s)	1611
MroXI	GAANNNNTTC	1 cut(s)	541
MslI	CAYNNNNRTG	1 cut(s)	807
MspA1I	CMGCKG	1 cut(s)	1719
MspR9I	CCNGG	1 cut(s)	1736
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	1736
NdeII	GATC	2 cut(s)	337, 580
NheI	GCTAGC	1 cut(s)	889
NlaIII	CATG	9 cut(s)	647, 869, 1088, 1232, 1342, 1376, 1529, 1702, 1746
NlaIV	GGNNCC	2 cut(s)	398, 1618
NmeAIII	GCCGAG	1 cut(s)	1228
NmuCI	GTSAC	2 cut(s)	1238, 1568
NspV	TTCGAA	1 cut(s)	281
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	7 cut(s)	368, 740, 1106, 1256, 1400, 1506, 1580
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	2 cut(s)	1642, 1733
PpsI	GAGTC	2 cut(s)	1642, 1733
PshAI	GACNNNNGTC	2 cut(s)	481, 1719
PshBI	ATTAAT	2 cut(s)	981, 1053
Psp6I	CCWGG	1 cut(s)	1734
PspGI	CCWGG	1 cut(s)	1734
PspN4I	GGNNCC	2 cut(s)	398, 1618
PspPI	GGNCC	2 cut(s)	456, 1721
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	1 cut(s)	807
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	337, 580
Sau96I	GGNCC	2 cut(s)	456, 1721
SchI	GAGTC	2 cut(s)	1643, 1733
ScrFI	CCNGG	1 cut(s)	1736
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	4 cut(s)	75, 1189, 1333, 1483
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	1 cut(s)	1721
SmiMI	CAYNNNNRTG	1 cut(s)	807
SsiI	CCGC	2 cut(s)	266, 1719
SspMI	CTAG	3 cut(s)	479, 890, 1589
StyD4I	CCNGG	1 cut(s)	1734
StyI	CCWWGG	2 cut(s)	1347, 1620
TaaI	ACNGT	3 cut(s)	469, 1064, 1730
TaiI	ACGT	2 cut(s)	189, 1631
TaqI	TCGA	5 cut(s)	67, 281, 375, 597, 1197
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	7 cut(s)	368, 740, 1106, 1256, 1400, 1506, 1580
TscAI	CASTG	2 cut(s)	706, 1243
TseFI	GTSAC	2 cut(s)	1238, 1568
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	1238, 1568
TspDTI	ATGAA	9 cut(s)	339, 528, 660, 791, 1101, 1245, 1248, 1389, 1542
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	706, 1243
VpaK11BI	GGWCC	1 cut(s)	1721
VspI	ATTAAT	2 cut(s)	981, 1053
XapI	RAATTY	1 cut(s)	1560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1618
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	3 cut(s)	479, 890, 1589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.