Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001650.1

Orthogroup ID

OG0018403

Physical Location & Seq

Genomic Coordinates Forward (+)

67175 .. 67752

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001650.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 578 bp

atggaagcaacaattgggagaaagaggaaggggagaacccatacatcagaagaagaagaagagaatcgtatgctaaaaaagaagatgcaaacaacactagggagaaagaggaaggagaaaacacatacatcagaagaagaagaagagaattgcaggcaaacaaaaaaagagaaaagcaaaatagacgtgagtttctccaagaggcgtaaagggttgtttggtaaggctgctcgtttgtgcaaggatttcagtgacacacgaattgcagttctcgtggtttcgaaagcaagtagaccttatgcttttggacactcttcggtggatgaagttctcaatgatctctaccacattcaaccaacaactactgaatctatcgaggggctcaatctgatgaggcaccaacacgagcaaaaaatgttgatggttgtgaaggaagagattgagaacgaattgagggcctgtcaaactgttgagggacttgcgtcgttgagagaaaaatacttgaagcttgatgaagatattaaaaagaggttgagaagttgttcctctgaagaaatcagttttgagggtggtgtgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

192

Amino Acids

22.25

Weight (kDa)

9.08

Isoelectric Point (pI)

67.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33170
rosa_laevigata	RLG00000035367
rosa_multiflora	Rmu_sc0001650.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020300
rosa_rugosa	Rorug05G0330800
rosa_samantha	Rh5AG395100 Rh5BG407500 Rh5CG431200 Rh5DG422300
rosa_wichuraiana	Rw5G037160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	570
AgsI	TTSAA	2 cut(s)	353, 505
AjiI	CACGTC	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	508
AluI	AGCT	1 cut(s)	508
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	456
AsuII	TTCGAA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	2 cut(s)	272, 404
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	415
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	398
BmsI	GCATC	1 cut(s)	75
BoxI	GACNNNNGTC	1 cut(s)	481
Bpu14I	TTCGAA	1 cut(s)	281
BseGI	GGATG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	398
BspT104I	TTCGAA	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	396
BssMI	GATC	1 cut(s)	337
BssSI	CACGAG	2 cut(s)	272, 404
Bst2BI	CACGAG	2 cut(s)	272, 404
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	4 cut(s)	54, 138, 319, 429
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstPAI	GACNNNNGTC	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	458
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	456
CseI	GACGC	1 cut(s)	471
CviJI	RGCY	4 cut(s)	227, 382, 458, 508
CviKI_1	RGCY	4 cut(s)	227, 382, 458, 508
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	4 cut(s)	54, 138, 319, 429
EarI	CTCTTC	4 cut(s)	54, 138, 319, 429
Eco24I	GRGCYC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	384
FaiI	YATR	4 cut(s)	42, 71, 126, 300
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	458
HgaI	GACGC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	2 cut(s)	64, 368
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	49, 133, 390, 550
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	3 cut(s)	22, 106, 424
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	88, 153, 240, 266
HpySE526I	ACGT	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	2 cut(s)	139, 472
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	4 cut(s)	12, 148, 261, 449
MroXI	GAANNNNTTC	1 cut(s)	541
MseI	TTAA	1 cut(s)	522
MunI	CAATTG	1 cut(s)	12
NdeII	GATC	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	251
NspV	TTCGAA	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	2 cut(s)	64, 368
PkrI	GCNGC	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	4 cut(s)	189, 298, 510, 533
SfaNI	GCATC	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	281
Sse9I	AATT	4 cut(s)	12, 148, 261, 449
SspMI	CTAG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	281, 375
TasI	AATT	4 cut(s)	12, 148, 261, 449
TfiI	GAWTC	2 cut(s)	64, 368
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	339, 528
TspRI	CASTG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.