Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0018403

Physical Location & Seq

Genomic Coordinates Reverse (-)

65466432 .. 65468198

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGGAAACAACAATTGGGAGAAAGAGGAAGGGGCGAACCCATACATTAGAAGCCGAAGAAGAAAATCGTACGCTAAAAAGGAAGATGCAAACCACACTGGGGAGAAAGACGAAGGAGAGAACACATACATTAGAAGAAGAAGAAGAAGAAGAGAATTGCAGGCAAACAAAAAAAGAGAAAAGCAAAATAGACGTGAGTTTCTCCAAGAGGCGTAAAGGGTTGTTTGGTAAGGCTGCTCGTTTGTGCAAGGATTTCAGTGACACACGAATTGCGGTTCTCGTGGTTTCGAAAGCAAGTAGACCTTATGCTTTTGGACACTCTTCGGTGGATGAAGTTCTCAATGATCTCTACCACATTCAACCAACAACTACTGAATCTGTCGAGGGGCTCAATCTGATGAGGCACCAACACGAGCAAAAAATGTTGATGGTTGTGAAGGAAGAGATTGATAACGAATTGAGGGCCTGTCAAACTGTTGAGGGACTTGCGTCGTTGAGAGAAAAATACTTGAAGCTTGATGAAGATATCAAAAAGAGGTTGAGAAGTTGTTCCTCTGAAGAAATCAGTTTTAAGGGTGGTGTGATTGATCAGAAGTACAATATCGACATCAATAATGTTGGTGATGAGGAATGTTCTTTGGGGTCAAGGCATGAAAGTAACTATAATAATTTTTCAAGGGCTGGTGGTCTAAGATTAGATGGAGACACTGGTGGTGAGGGGTATTGTTCTGGGTTAGGGCATAGGGATTCAACTACTGGATTTAGGGGTAATTCTTTGCTGGCTTCAACTGAAAGTGATTATGGTATTCATAATGATGGTTTAACAATAAATGGAGACATTGGTGGTGATGGATGTTCTTTAAGGTTATGGCATGATGTTGGTGATAATTCTTTGCTAGCTTCAACCAACTATTCTGTTAATGATGGTGGGTTAGGGTTAGGGCGTGAAGTTAGTGGTAATTCTTTGAGGGATTTAACTACTGGCATTAATGGTAATTCTTTGTGTTCAACTACAAGTAATTATGGTGATGATGGGGGTTTAAGATTAAATGGAGATATTAATGGAGACGGTTGTTCTTTAGGGTTATGGCATGGAGTAAGTGATAATTCTTTGAGGGATTCAACTACTGACATTAGGGGTAATGTTTTGTTGGCTTCAACTACAAGTAATTATGGTGTTGATGGGGATTTAAGATTAAATGGAGACATCGATGCCGAGGGATGTTCTTTAGGGTTATGGCATGAAGTCAGTGACAATCCTTTGAGGGATTCATCTACTGACATTAGTGGTAATGTTTTGTTGGCTTCAACTACAAGTAATAATGATGTTGATGGGGATTTCAGATTAAATGGAGACATGGATGCCGAGGGATGTTCTTTAGGGTTCTCGTATGAAGTTAGTGATAATCCTTTGGGGGATTCAACTACTGACACTATTGGTAATGTTCTGTTGGCTTCAACTACAAGTAATGATGGTGTTGATGGTGGTTTAAGATTGATTGGAGGCATTGATGCTGATGATGAGGGATTCTCTTTAGGGTTAGGACATGAAGTTTATGGTAATTCTTTGGGGGATTTTAAAATTTCTGGTGACTTTGATGATTCACCTCTAGCTTGGGTTTGTTCTTCTTCCAATGGTGCCTTGGAGACGTTGGAGTCATCTTCAGATTTTGTGCAATCCAATACCAACAAGGGATGTTATAGCTACTTGATGGAAGGAGACATAGACAGCGGTCCTCACAGTTACCAGGACTCATGTAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

588

Amino Acids

63.61

Weight (kDa)

4.67

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	60 - 104	1.8e-07	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33170
rosa_laevigata	RLG00000035367
rosa_multiflora	Rmu_sc0001650.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020300
rosa_rugosa	Rorug05G0330800
rosa_samantha	Rh5AG395100 Rh5BG407500 Rh5CG431200 Rh5DG422300
rosa_wichuraiana	Rw5G037160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1654
AccB1I	GGYRCC	2 cut(s)	402, 1637
AccI	GTMKAC	1 cut(s)	298
AciI	CCGC	2 cut(s)	272, 1731
AcsI	RAATTY	1 cut(s)	1581
AcuI	CTGAAG	2 cut(s)	576, 1647
AfaI	GTAC	2 cut(s)	70, 596
AfiI	CCNNNNNNNGG	1 cut(s)	99
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	1746
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	514, 899, 1613, 1704
AluI	AGCT	4 cut(s)	514, 899, 1613, 1704
Alw26I	GTCTC	7 cut(s)	696, 828, 1059, 1197, 1347, 1640, 1713
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	1581
AseI	ATTAAT	2 cut(s)	987, 1059
Asp700I	GAANNNNTTC	1 cut(s)	547
AspS9I	GGNCC	2 cut(s)	462, 1733
AsuHPI	GGTGA	7 cut(s)	632, 725, 857, 893, 1037, 1596, 1601
AsuII	TTCGAA	1 cut(s)	287
AsuNHI	GCTAGC	1 cut(s)	895
AvaII	GGWCC	1 cut(s)	1733
BanI	GGYRCC	2 cut(s)	402, 1637
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	2 cut(s)	278, 410
BbvI	GCAGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	1748
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	7 cut(s)	696, 828, 1059, 1197, 1347, 1640, 1713
BfaI	CTAG	2 cut(s)	896, 1610
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	1748
Bme18I	GGWCC	1 cut(s)	1733
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	462, 1733
BmiI	GGNNCC	2 cut(s)	404, 1639
BmrFI	CCNGG	1 cut(s)	1748
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	4 cut(s)	75, 1201, 1351, 1501
BmtI	GCTAGC	1 cut(s)	899
BmuI	ACTGGG	1 cut(s)	107
BoxI	GACNNNNGTC	2 cut(s)	487, 1731
BplI	GAGNNNNNCTC	2 cut(s)	1514, 1546
Bpu14I	TTCGAA	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	1209
BsaJI	CCNNGG	3 cut(s)	1215, 1365, 1641
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	4 cut(s)	102, 712, 760, 985
BseBI	CCWGG	1 cut(s)	1748
BseCI	ATCGAT	1 cut(s)	1209
BseDI	CCNNGG	3 cut(s)	1215, 1365, 1641
BseGI	GGATG	6 cut(s)	334, 857, 1226, 1366, 1376, 1700
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseNI	ACTGG	4 cut(s)	102, 712, 760, 985
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	464
BshNI	GGYRCC	2 cut(s)	402, 1637
BshVI	ATCGAT	1 cut(s)	1209
BsiWI	CGTACG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	7 cut(s)	696, 828, 1059, 1197, 1347, 1640, 1713
BsmBI	CGTCTC	2 cut(s)	1059, 1640
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	343, 586
BspACI	CCGC	2 cut(s)	272, 1731
BspANI	GGCC	1 cut(s)	464
BspDI	ATCGAT	1 cut(s)	1209
BspLI	GGNNCC	2 cut(s)	404, 1639
BspOI	GCTAGC	1 cut(s)	899
BspT104I	TTCGAA	1 cut(s)	287
BspT107I	GGYRCC	2 cut(s)	402, 1637
BsrI	ACTGG	4 cut(s)	102, 712, 760, 985
BssECI	CCNNGG	3 cut(s)	1215, 1365, 1641
BssMI	GATC	2 cut(s)	343, 586
BssSI	CACGAG	2 cut(s)	278, 410
BssT1I	CCWWGG	1 cut(s)	1641
Bst2BI	CACGAG	2 cut(s)	278, 410
Bst2UI	CCWGG	1 cut(s)	1748
Bst4CI	ACNGT	3 cut(s)	475, 1070, 1742
Bst6I	CTCTTC	3 cut(s)	144, 325, 435
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	161, 780, 897
BstDEI	CTNAG	1 cut(s)	689
BstF5I	GGATG	6 cut(s)	334, 857, 1226, 1366, 1376, 1700
BstKTI	GATC	2 cut(s)	346, 589
BstMAI	GTCTC	7 cut(s)	696, 828, 1059, 1197, 1347, 1640, 1713
BstMBI	GATC	2 cut(s)	343, 586
BstNI	CCWGG	1 cut(s)	1748
BstPAI	GACNNNNGTC	2 cut(s)	487, 1731
BstSCI	CCNGG	1 cut(s)	1746
BstV1I	GCAGC	1 cut(s)	220
Bsu15I	ATCGAT	1 cut(s)	1209
BsuRI	GGCC	1 cut(s)	464
BsuTUI	ATCGAT	1 cut(s)	1209
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	6 cut(s)	334, 857, 1226, 1366, 1376, 1700
BtsIMutI	CAGTG	4 cut(s)	95, 262, 705, 1255
Cac8I	GCNNGC	3 cut(s)	161, 780, 897
Cfr13I	GGNCC	2 cut(s)	462, 1733
ClaI	ATCGAT	1 cut(s)	1209
CseI	GACGC	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	69, 595
CviAII	CATG	7 cut(s)	650, 872, 1091, 1241, 1357, 1547, 1755
CviQI	GTAC	2 cut(s)	69, 595
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	2 cut(s)	345, 588
DpnII	GATC	2 cut(s)	343, 586
DraI	TTTAAA	1 cut(s)	1579
DrdI	GACNNNNNNGTC	1 cut(s)	1654
DseDI	GACNNNNNNGTC	1 cut(s)	1654
Eam1104I	CTCTTC	3 cut(s)	144, 325, 435
EarI	CTCTTC	3 cut(s)	144, 325, 435
Eco130I	CCWWGG	1 cut(s)	1641
Eco24I	GRGCYC	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	1733
Eco57I	CTGAAG	2 cut(s)	576, 1647
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	1746
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	1641
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	1641
Esp3I	CGTCTC	2 cut(s)	1059, 1640
FaeI	CATG	7 cut(s)	653, 875, 1094, 1244, 1360, 1550, 1758
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	7 cut(s)	649, 871, 1090, 1240, 1356, 1546, 1754
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	6 cut(s)	341, 864, 1233, 1373, 1383, 1707
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	896, 1610
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	464
HgaI	GACGC	1 cut(s)	477
Hin1II	CATG	7 cut(s)	653, 875, 1094, 1244, 1360, 1550, 1758
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	9 cut(s)	374, 746, 1118, 1268, 1418, 1527, 1601, 1655, 1751
HphI	GGTGA	7 cut(s)	632, 725, 857, 893, 1037, 1596, 1601
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	5 cut(s)	396, 556, 591, 1343, 1666
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	4 cut(s)	22, 106, 430, 1709
HpyCH4III	ACNGT	3 cut(s)	475, 1070, 1742
HpyCH4IV	ACGT	2 cut(s)	192, 1649
HpyCH4V	TGCA	4 cut(s)	88, 159, 246, 1675
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	2 cut(s)	192, 1649
Hsp92II	CATG	7 cut(s)	653, 875, 1094, 1244, 1360, 1550, 1758
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	343, 586
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	4 cut(s)	75, 1201, 1351, 1501
MaeI	CTAG	2 cut(s)	896, 1610
MaeII	ACGT	2 cut(s)	192, 1649
MaeIII	GTNAC	6 cut(s)	257, 656, 1250, 1589, 1742, 1757
MalI	GATC	2 cut(s)	345, 588
MboI	GATC	2 cut(s)	343, 586
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	1664, 1745
MmeI	TCCRAC	1 cut(s)	1632
MroXI	GAANNNNTTC	1 cut(s)	547
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	1731
MspR9I	CCNGG	1 cut(s)	1748
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	1748
NdeII	GATC	2 cut(s)	343, 586
NheI	GCTAGC	1 cut(s)	895
NlaIII	CATG	7 cut(s)	653, 875, 1094, 1244, 1360, 1550, 1758
NlaIV	GGNNCC	2 cut(s)	404, 1639
NmeAIII	GCCGAG	2 cut(s)	1240, 1390
NmuCI	GTSAC	3 cut(s)	257, 1250, 1589
NspV	TTCGAA	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	547
PfeI	GAWTC	7 cut(s)	374, 746, 1118, 1268, 1418, 1527, 1601
Pfl23II	CGTACG	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	2 cut(s)	1663, 1745
PpsI	GAGTC	2 cut(s)	1663, 1745
PshAI	GACNNNNGTC	2 cut(s)	487, 1731
PshBI	ATTAAT	2 cut(s)	987, 1059
Psp6I	CCWGG	1 cut(s)	1746
PspGI	CCWGG	1 cut(s)	1746
PspLI	CGTACG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	404, 1639
PspPI	GGNCC	2 cut(s)	462, 1733
RsaI	GTAC	2 cut(s)	70, 596
RsaNI	GTAC	2 cut(s)	69, 595
RseI	CAYNNNNRTG	1 cut(s)	813
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	343, 586
Sau96I	GGNCC	2 cut(s)	462, 1733
SchI	GAGTC	2 cut(s)	1664, 1745
ScrFI	CCNGG	1 cut(s)	1748
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	4 cut(s)	75, 1201, 1351, 1501
SfuI	TTCGAA	1 cut(s)	287
SinI	GGWCC	1 cut(s)	1733
SmiMI	CAYNNNNRTG	1 cut(s)	813
SsiI	CCGC	2 cut(s)	272, 1731
SspMI	CTAG	2 cut(s)	896, 1610
StyD4I	CCNGG	1 cut(s)	1746
StyI	CCWWGG	1 cut(s)	1641
TaaI	ACNGT	3 cut(s)	475, 1070, 1742
TaiI	ACGT	2 cut(s)	195, 1652
TaqI	TCGA	4 cut(s)	287, 381, 603, 1209
TatI	WGTACW	1 cut(s)	594
TfiI	GAWTC	7 cut(s)	374, 746, 1118, 1268, 1418, 1527, 1601
TscAI	CASTG	4 cut(s)	102, 262, 712, 1255
TseFI	GTSAC	3 cut(s)	257, 1250, 1589
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	3 cut(s)	257, 1250, 1589
TspDTI	ATGAA	8 cut(s)	345, 534, 666, 797, 1257, 1260, 1407, 1563
TspRI	CASTG	4 cut(s)	102, 262, 712, 1255
VpaK11BI	GGWCC	1 cut(s)	1733
VspI	ATTAAT	2 cut(s)	987, 1059
XapI	RAATTY	1 cut(s)	1581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1639
XmiI	GTMKAC	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	2 cut(s)	896, 1610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.