Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018403

Physical Location & Seq

Genomic Coordinates Reverse (-)

65968318 .. 65970054

Gene Structure 1737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGGAAACAACAATTGGGAGAAAGAGGAAGGGGCGAACCCATACATTAGAAGCCGAAGAAGAAAATCGTACGCTAAAAAAGAAGATGCAAACAACACTGGGGAGAAAGAGGAAGGAGAGAACACATACGTTAGAAGAAGAAGAAGAGAATTGCAGGCAAACAAAAAAAGAGAAAAGCAAAATAGACGTGAGTTTCTCCAAAAGGCGTAAAGGGTTGTTTGGTAAGGCTGCTCATTTGTGCAAGGATTTCAATGACACACGAATTGCGGTTCTCGTGGTTTCGAAAGCAAGTAGACCTTATGCTTTTGGACACTCTTCGGTGGATGAAGTTCTCAATGATTTCTACCACATTCAACCAACAACTACTGAATCTGTTGAGGGGCTCAATCTGATGAGGCACCAACACGAGCAAAAAATGTTGATGGTTGTGAAGGAAGAGATTGAGAACGAATTGAGGGCCTGTCAAACAGTTGAGGGACTTGCATCGTTGAGAGAAAAATATTTGAAGCTTGATGAAGATATCAAAAAGAGGTTGAGAAGTTGTTCCTCTGAAGAAATCAGTTTTGAGGGTGGTGTGATTGATCAGAAGTACAATATCGACATCATTAATGTTGGTGATGAGGAATGTTCTTTAGGGTCAAGGCATGAAAGTAACTATAATAATTTCTCAAGGGCTGGTGGTCTAAGATTAGATGGAGACACTGGTGGTGAGGGGTATTGTTCTGGGTTAGGGCATAGGGATTCAACTACTGGATTTAGGGGTAATTCTTTGCTGGCTTCAACTGAAAGTGATTATGGTATTCATAATGATGGTTTATCAATAAATGGAAACATTGATGGTGATGGATGTTCTTTAAGGTTATGGCATGATGTTGGTGATAATTCTTTGCTAGCTTCAACTAACTATTCTATTGATGATGGTGGGTTAGGGTTAGGGCGTGAAGTTAGTGGTAATTCTTTGATGGATTTAACTACTGGCATTAATGGTAATTCTTTGTGTTCAACTACAAGTAATTATGGTGATGATGGGGGTTTAAGATTAAATCGAGATATTAATGGAGACGGTTGTTCTTTAGGGTTATGGCATGAAGTAAGTGATAATTCTTTGAGGGATTCAACTATTGACATTAGAGGTAATGTTTTGTTGGCTTCAACTACTTCAACTACAAGTAATTATGGTGTTGACGGGGATTTAAGATTAAATGGAGACATCGATGCCGAGGGATGTTCTTTAGGGTTATGGTATGAAGTCAGTGACAATCCTTTGAGGGATTCATCTACTGACATTAGCGGTAATGTTTTGTTGGCTTCAACTACAAGTAATAATGGTGTTGATGGGGATTTAAGATTAAATGGAGACATGGATGCCGAGGGATGTTCTTTAGGGTTCTGGCATGAAGTTAGTGATAATCCTTTGGGGGATTCAACTACTGACTCTATTGGTAATGTTTTGTTGGCTTCAACTACAAGTAATGATGGTGTTGATGGTGGTTTAAGATTGAATGGAGGCATTGATGCTGATGAGGGATTCTCTTTAGGGTTAGGACATGAAGTTTATGGTAATTCTTTGGGGGATTTTAAAATTTCTGGTGACTTTGATGATTCATCTCTAGCTTGGGTTTGGTCTTCTTCCAATGCTGCCTTGGAGACGTTGGAGTCATCATCAGATTATAGCTACTTGATGGAAGGAGACATAGACAGCGGTCCTTACAGTTACCAGGACTCATGTAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

579

Amino Acids

62.85

Weight (kDa)

4.64

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	58 - 102	1e-07	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Orthologous Genes (Group: OG0018403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33170
rosa_laevigata	RLG00000035367
rosa_multiflora	Rmu_sc0001650.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020300
rosa_rugosa	Rorug05G0330800
rosa_samantha	Rh5AG395100 Rh5BG407500 Rh5CG431200 Rh5DG422300
rosa_wichuraiana	Rw5G037160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1654
AccB1I	GGYRCC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	3 cut(s)	266, 1290, 1701
AcsI	RAATTY	1 cut(s)	1581
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	70, 590
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	1716
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	508, 893, 1613, 1674
AluI	AGCT	4 cut(s)	508, 893, 1613, 1674
Alw26I	GTCTC	6 cut(s)	690, 1053, 1200, 1350, 1640, 1683
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	2 cut(s)	227, 1637
ApoI	RAATTY	1 cut(s)	1581
AseI	ATTAAT	3 cut(s)	606, 981, 1053
Asp700I	GAANNNNTTC	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	456, 1703
AsuHPI	GGTGA	6 cut(s)	626, 719, 851, 887, 1031, 1601
AsuII	TTCGAA	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	889
AvaII	GGWCC	1 cut(s)	1703
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	2 cut(s)	272, 404
BbsI	GAAGAC	1 cut(s)	1617
BbvI	GCAGC	2 cut(s)	214, 1624
BciT130I	CCWGG	1 cut(s)	1718
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	6 cut(s)	690, 1053, 1200, 1350, 1640, 1683
BfaI	CTAG	2 cut(s)	890, 1610
BisI	GCNGC	2 cut(s)	228, 1638
BlsI	GCNGC	2 cut(s)	229, 1639
Bme1390I	CCNGG	1 cut(s)	1718
Bme18I	GGWCC	1 cut(s)	1703
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	456, 1703
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	1718
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	5 cut(s)	75, 491, 1204, 1354, 1504
BmtI	GCTAGC	1 cut(s)	893
BmuI	ACTGGG	1 cut(s)	107
BoxI	GACNNNNGTC	1 cut(s)	1701
BpiI	GAAGAC	1 cut(s)	1617
BplI	GAGNNNNNCTC	2 cut(s)	1514, 1546
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	652
Bsa29I	ATCGAT	1 cut(s)	1212
BsaJI	CCNNGG	3 cut(s)	1218, 1368, 1641
Bse1I	ACTGG	4 cut(s)	102, 706, 754, 979
BseBI	CCWGG	1 cut(s)	1718
BseCI	ATCGAT	1 cut(s)	1212
BseDI	CCNNGG	3 cut(s)	1218, 1368, 1641
BseGI	GGATG	5 cut(s)	328, 851, 1229, 1369, 1379
BseNI	ACTGG	4 cut(s)	102, 706, 754, 979
BseXI	GCAGC	2 cut(s)	214, 1624
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	396
BshVI	ATCGAT	1 cut(s)	1212
BsiWI	CGTACG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	489
BsmAI	GTCTC	6 cut(s)	690, 1053, 1200, 1350, 1640, 1683
BsmBI	CGTCTC	2 cut(s)	1053, 1640
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	580
BspACI	CCGC	3 cut(s)	266, 1290, 1701
BspANI	GGCC	1 cut(s)	458
BspDI	ATCGAT	1 cut(s)	1212
BspLI	GGNNCC	1 cut(s)	398
BspOI	GCTAGC	1 cut(s)	893
BspT104I	TTCGAA	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	396
BsrI	ACTGG	4 cut(s)	102, 706, 754, 979
BssECI	CCNNGG	3 cut(s)	1218, 1368, 1641
BssMI	GATC	1 cut(s)	580
BssSI	CACGAG	2 cut(s)	272, 404
BssT1I	CCWWGG	1 cut(s)	1641
Bst2BI	CACGAG	2 cut(s)	272, 404
Bst2UI	CCWGG	1 cut(s)	1718
Bst4CI	ACNGT	3 cut(s)	469, 1064, 1712
Bst6I	CTCTTC	3 cut(s)	138, 319, 429
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	155, 774, 891
BstDEI	CTNAG	1 cut(s)	683
BstF5I	GGATG	5 cut(s)	328, 851, 1229, 1369, 1379
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	6 cut(s)	690, 1053, 1200, 1350, 1640, 1683
BstMBI	GATC	1 cut(s)	580
BstNI	CCWGG	1 cut(s)	1718
BstPAI	GACNNNNGTC	1 cut(s)	1701
BstSCI	CCNGG	1 cut(s)	1716
BstV1I	GCAGC	2 cut(s)	214, 1624
BstV2I	GAAGAC	1 cut(s)	1617
Bsu15I	ATCGAT	1 cut(s)	1212
BsuRI	GGCC	1 cut(s)	458
BsuTUI	ATCGAT	1 cut(s)	1212
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	5 cut(s)	328, 851, 1229, 1369, 1379
BtsIMutI	CAGTG	3 cut(s)	95, 699, 1258
Cac8I	GCNNGC	3 cut(s)	155, 774, 891
Cfr13I	GGNCC	2 cut(s)	456, 1703
ClaI	ATCGAT	1 cut(s)	1212
Csp6I	GTAC	2 cut(s)	69, 589
CviAII	CATG	7 cut(s)	644, 866, 1085, 1360, 1394, 1547, 1725
CviQI	GTAC	2 cut(s)	69, 589
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
DraI	TTTAAA	1 cut(s)	1579
DrdI	GACNNNNNNGTC	1 cut(s)	1654
DseDI	GACNNNNNNGTC	1 cut(s)	1654
Eam1104I	CTCTTC	3 cut(s)	138, 319, 429
EarI	CTCTTC	3 cut(s)	138, 319, 429
Eco130I	CCWWGG	1 cut(s)	1641
Eco24I	GRGCYC	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	1703
Eco57I	CTGAAG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	1716
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	1641
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	1641
Esp3I	CGTCTC	2 cut(s)	1053, 1640
FaeI	CATG	7 cut(s)	647, 869, 1088, 1363, 1397, 1550, 1728
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	7 cut(s)	643, 865, 1084, 1359, 1393, 1546, 1724
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	228, 1638
FokI	GGATG	5 cut(s)	335, 858, 1236, 1376, 1386
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	228, 1638
FspBI	CTAG	2 cut(s)	890, 1610
GluI	GCNGC	2 cut(s)	228, 1638
HaeIII	GGCC	1 cut(s)	458
Hin1II	CATG	7 cut(s)	647, 869, 1088, 1363, 1397, 1550, 1728
HincII	GTYRAC	1 cut(s)	1183
HindII	GTYRAC	1 cut(s)	1183
HindIII	AAGCTT	1 cut(s)	506
HphI	GGTGA	6 cut(s)	626, 719, 851, 887, 1031, 1601
Hpy166II	GTNNAC	2 cut(s)	293, 1183
Hpy188I	TCNGA	4 cut(s)	390, 550, 585, 1666
Hpy188III	TCNNGA	1 cut(s)	1046
Hpy8I	GTNNAC	2 cut(s)	293, 1183
HpyAV	CCTTC	4 cut(s)	22, 106, 424, 1679
HpyCH4III	ACNGT	3 cut(s)	469, 1064, 1712
HpyCH4IV	ACGT	3 cut(s)	128, 186, 1649
HpyCH4V	TGCA	4 cut(s)	88, 153, 240, 482
HpyF3I	CTNAG	1 cut(s)	683
HpySE526I	ACGT	3 cut(s)	128, 186, 1649
Hsp92II	CATG	7 cut(s)	647, 869, 1088, 1363, 1397, 1550, 1728
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	1 cut(s)	580
Lsp1109I	GCAGC	2 cut(s)	214, 1624
LweI	GCATC	5 cut(s)	75, 491, 1204, 1354, 1504
MaeI	CTAG	2 cut(s)	890, 1610
MaeII	ACGT	3 cut(s)	128, 186, 1649
MaeIII	GTNAC	5 cut(s)	650, 1253, 1589, 1712, 1727
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	384
MlyI	GAGTC	3 cut(s)	1427, 1664, 1715
MmeI	TCCRAC	1 cut(s)	1632
MroXI	GAANNNNTTC	1 cut(s)	541
MslI	CAYNNNNRTG	1 cut(s)	807
MspA1I	CMGCKG	1 cut(s)	1701
MspR9I	CCNGG	1 cut(s)	1718
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	1718
NdeII	GATC	1 cut(s)	580
NheI	GCTAGC	1 cut(s)	889
NlaIII	CATG	7 cut(s)	647, 869, 1088, 1363, 1397, 1550, 1728
NlaIV	GGNNCC	1 cut(s)	398
NmeAIII	GCCGAG	2 cut(s)	1243, 1393
NmuCI	GTSAC	2 cut(s)	1253, 1589
NspV	TTCGAA	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	7 cut(s)	368, 740, 1112, 1271, 1421, 1527, 1601
Pfl23II	CGTACG	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	229, 1639
PleI	GAGTC	3 cut(s)	1427, 1663, 1715
PpsI	GAGTC	3 cut(s)	1427, 1663, 1715
PshAI	GACNNNNGTC	1 cut(s)	1701
PshBI	ATTAAT	3 cut(s)	606, 981, 1053
Psp6I	CCWGG	1 cut(s)	1716
PspGI	CCWGG	1 cut(s)	1716
PspLI	CGTACG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	2 cut(s)	456, 1703
RsaI	GTAC	2 cut(s)	70, 590
RsaNI	GTAC	2 cut(s)	69, 589
RseI	CAYNNNNRTG	1 cut(s)	807
SatI	GCNGC	2 cut(s)	228, 1638
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	2 cut(s)	456, 1703
SchI	GAGTC	3 cut(s)	1427, 1664, 1715
ScrFI	CCNGG	1 cut(s)	1718
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	5 cut(s)	75, 491, 1204, 1354, 1504
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	1 cut(s)	1703
SmiMI	CAYNNNNRTG	1 cut(s)	807
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
SsiI	CCGC	3 cut(s)	266, 1290, 1701
SspI	AATATT	1 cut(s)	500
SspMI	CTAG	2 cut(s)	890, 1610
StyD4I	CCNGG	1 cut(s)	1716
StyI	CCWWGG	1 cut(s)	1641
TaaI	ACNGT	3 cut(s)	469, 1064, 1712
TaiI	ACGT	3 cut(s)	131, 189, 1652
TaqI	TCGA	4 cut(s)	281, 597, 1045, 1212
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	7 cut(s)	368, 740, 1112, 1271, 1421, 1527, 1601
TscAI	CASTG	3 cut(s)	102, 706, 1258
TseFI	GTSAC	2 cut(s)	1253, 1589
TseI	GCWGC	2 cut(s)	227, 1637
Tsp45I	GTSAC	2 cut(s)	1253, 1589
TspRI	CASTG	3 cut(s)	102, 706, 1258
VpaK11BI	GGWCC	1 cut(s)	1703
VspI	ATTAAT	3 cut(s)	606, 981, 1053
XapI	RAATTY	1 cut(s)	1581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1639
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	2 cut(s)	890, 1610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.