Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016158

Physical Location & Seq

Genomic Coordinates Forward (+)

29548733 .. 29549490

Gene Structure 758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34151.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAGCAAAGATATGGGCCTTTCTTGGGCCGAGTGCCGGAAGAACACGTCGTGTACATCGGCGACGACGGTGACAGTTACAATGACCCAGAGAGCCTCCTCCTCTACGAGCCACGTGGCGTCGCCGGAAAGAAATGGCGCTCGTCGGAGAACTGGGCCAGTGCTATCCTTTGGGTCATTATCTTCTGCTTCTTCGTCCTCTGGTGGTTCTCTGTCTCAGCTTGTAGTATGAAGGTTATGGCCCATCTGGCCAGTTATCTAGATGCAGTTATTCAAGACCGACCCCAACGTCGCTCCAATCCATTCAACAGCTTTCTCAATATGCAAACGAGGAGGAAGGTCAAACAGTTCAACCAAACTAGAGTAGAAATGCTCGAAACATCTATGAAAGGCTGGACACCATCGTATGAGGCAACGGCTATTAAAACTGAAGAAGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

17.19

Weight (kDa)

6.73

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07860
fragaria_vesca	FvH4_3g34151
malus_domestica	MD11G1119900.v1.1
prunus_persica	Prupe.6G090000_v2.0.a1
pyrus_communis	pycom11g10120
rosa_chinensis	RchiOBHm_Chr5g0061801
rosa_laevigata	RLG00000035507
rosa_multiflora	Rmu_sc0004134.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018930
rosa_rugosa	Rorug05G0344100
rosa_samantha	Rh5AG404900 Rh5BG417900 Rh5CG442400 Rh5DG432000
rosa_wichuraiana	Rw5G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	249
AcvI	CACGTG	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	26, 37
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	275, 307, 352
AjiI	CACGTC	1 cut(s)	49
AluBI	AGCT	2 cut(s)	221, 312
AluI	AGCT	2 cut(s)	221, 312
Alw26I	GTCTC	1 cut(s)	220
AoxI	GGCC	5 cut(s)	17, 28, 156, 240, 249
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	4 cut(s)	17, 28, 156, 241
AsuHPI	GGTGA	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	251
BbrPI	CACGTG	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	252, 409
BceAI	ACGGC	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	260, 360
BfoI	RGCGCY	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	4 cut(s)	17, 28, 156, 241
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 37
Bse1I	ACTGG	3 cut(s)	158, 159, 252
BseLI	CCNNNNNNNGG	2 cut(s)	26, 37
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	3 cut(s)	158, 159, 252
BseRI	GAGGAG	3 cut(s)	89, 92, 346
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	5 cut(s)	19, 30, 158, 242, 251
BsiSI	CCGG	2 cut(s)	38, 126
BslI	CCNNNNNNNGG	2 cut(s)	26, 37
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	5 cut(s)	19, 30, 158, 242, 251
Bsp1407I	TGTACA	1 cut(s)	54
BspANI	GGCC	5 cut(s)	19, 30, 158, 242, 251
BspCNI	CTCAG	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	158, 159, 252
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	71, 77, 348
BstACI	GRCGYC	1 cut(s)	120
BstAUI	TGTACA	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	5 cut(s)	19, 30, 158, 242, 251
BtrI	CACGTC	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	4 cut(s)	17, 28, 156, 241
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	55
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	52
DrdI	GACNNNNNNGTC	1 cut(s)	288
DseDI	GACNNNNNNGTC	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	249
Eco72I	CACGTG	1 cut(s)	116
FaiI	YATR	7 cut(s)	15, 230, 239, 323, 386, 408, 440
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	260, 360
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	5
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	5 cut(s)	19, 30, 158, 242, 251
HapII	CCGG	2 cut(s)	38, 126
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	38, 126
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	260, 275
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	6 cut(s)	53, 68, 71, 125, 148, 294
HpyAV	CCTTC	2 cut(s)	226, 331
HpyCH4III	ACNGT	3 cut(s)	71, 77, 348
HpyCH4IV	ACGT	3 cut(s)	48, 115, 289
HpyCH4V	TGCA	3 cut(s)	4, 266, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	3 cut(s)	48, 115, 289
Hsp92I	GRCGYC	1 cut(s)	120
HspAI	GCGC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	9 cut(s)	51, 102, 139, 139, 172, 187, 233, 265, 379
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	260, 360
MaeII	ACGT	3 cut(s)	48, 115, 289
MaeIII	GTNAC	2 cut(s)	71, 77
MboII	GAAGA	4 cut(s)	53, 175, 184, 443
MlsI	TGGCCA	1 cut(s)	251
MluNI	TGGCCA	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	107, 110, 113, 209, 324, 327, 403
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	2 cut(s)	38, 126
MwoI	GCNNNNNNNGC	1 cut(s)	248
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	6
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	116
PspCI	CACGTG	1 cut(s)	116
PspPI	GGNCC	4 cut(s)	17, 28, 156, 241
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	4 cut(s)	17, 28, 156, 241
SetI	ASST	7 cut(s)	51, 118, 223, 237, 292, 314, 342
SfaNI	GCATC	1 cut(s)	253
SfiI	GGCCNNNNNGGCC	1 cut(s)	248
SspMI	CTAG	2 cut(s)	260, 360
TaaI	ACNGT	3 cut(s)	71, 77, 348
TaiI	ACGT	3 cut(s)	51, 118, 292
TaqI	TCGA	1 cut(s)	375
TaqII	GACCGA	1 cut(s)	294
TatI	WGTACW	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	245, 401
TspRI	CASTG	1 cut(s)	166
XbaI	TCTAGA	1 cut(s)	259
XspI	CTAG	2 cut(s)	260, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.