Rroxscaffold_1G00018930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016158
Physical Location & Seq
Reverse (-)
23044193 .. 23046467
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018930.1

Sequence Viewer

Length: 744 bp
ATGCGTATGCAGCAGAGATATGTGCCTTACTTGGACCGAGTGCCGGAAGAACAAGTCATGGATATCGCCGACGACGACGGCGTCGACCCAGAGAGCCTCCTCCCCTACGAGACACGTGGCATCACCGGAAAGAAATGGCGCTCGCCGGAGAAGTGGGTCCACGCTATTCCTTGGGTTGTGCTCTTCTGCATCCTCGTCCTCTGGTGGTTCTCTTTCACAGTAAAAGTCGTGAGCATAGATGGAAGAATTGCTGCAATACGTGAAACTGATATACCACTCCTTCTCAACAACACTCGAATTGGTATTGCATTCCTGGCAGCTGAGGCAATGTCACCATTCTCCTTGGCTCAGAATTTTACAGTCACCAATGTAACTGAGGTTCAGCTGGTGAATACGGCTCCTCACACAGTCAACAATGCCACTGAAGCTCAGCTGGTGAGTAACCGAACTCGGAATCTCTCAGTCAAAAATGTCACCGAAGCTCAGCTGGTGAGTAAGCCAACTCAGAATCTCACAGCCCACAAGGTCACTAAACCTCAACTGGTGAGTAAGCGAACTCAGAATCTTACATCCCACAATGTCACTGAAATTCAACTGGTGCGGAAGCGAACTCGGAATCTCACAGACAATAATGTCACTGAAGCTCAACTGGTGAGTAAGCGAACTCAGAATCTCACAGCCAACAATGTCACTGGAGTTGAGGCCGTGAGTTCAGCTTCTCAGAATCTCAAAGAATGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.78

Weight (kDa)

9.14

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07860
fragaria_vesca FvH4_3g34151
malus_domestica MD11G1119900.v1.1
prunus_persica Prupe.6G090000_v2.0.a1
pyrus_communis pycom11g10120
rosa_chinensis RchiOBHm_Chr5g0061801
rosa_laevigata RLG00000035507
rosa_multiflora Rmu_sc0004134.1_g000010
rosa_roxburghii Rroxscaffold_1G00018930
rosa_rugosa Rorug05G0344100
rosa_samantha Rh5AG404900 Rh5BG417900 Rh5CG442400 Rh5DG432000
rosa_wichuraiana Rw5G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 80, 632
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 601
AcsI RAATTY 2 cut(s) 352, 588
AcuI CTGAAG 2 cut(s) 444, 660
AcvI CACGTG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 593
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 8 cut(s) 320, 385, 428, 433, 482, 487, 644, 716
AluI AGCT 8 cut(s) 320, 385, 428, 433, 482, 487, 644, 716
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 1 cut(s) 702
ApeKI GCWGC 3 cut(s) 10, 251, 317
ApoI RAATTY 2 cut(s) 352, 588
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 34, 157
AsuHPI GGTGA 9 cut(s) 115, 324, 355, 400, 448, 466, 502, 556, 664
AvaII GGWCC 2 cut(s) 34, 157
BbrPI CACGTG 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 22, 238, 329
BccI CCATC 1 cut(s) 233
BceAI ACGGC 3 cut(s) 94, 411, 689
BciT130I CCWGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 3 cut(s) 11, 252, 318
BlpI GCTNAGC 2 cut(s) 429, 483
BlsI GCNGC 3 cut(s) 12, 253, 319
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 2 cut(s) 34, 157
BmgT120I GGNCC 2 cut(s) 34, 157
BmiI GGNNCC 2 cut(s) 158, 399
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 2 cut(s) 129, 198
BpmI CTGGAG 1 cut(s) 714
Bpu10I CCTNAGC 1 cut(s) 321
Bpu1102I GCTNAGC 2 cut(s) 429, 483
BsaAI YACGTR 2 cut(s) 116, 260
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 170, 342
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 4 cut(s) 546, 600, 654, 697
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 170, 342
BseGI GGATG 2 cut(s) 189, 569
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 333
BseNI ACTGG 4 cut(s) 546, 600, 654, 697
BseRI GAGGAG 2 cut(s) 89, 390
BseXI GCAGC 3 cut(s) 22, 238, 329
BshFI GGCC 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 3 cut(s) 44, 126, 146
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 704
Bsp1286I GDGCHC 1 cut(s) 183
Bsp1720I GCTNAGC 2 cut(s) 429, 483
BspACI CCGC 1 cut(s) 601
BspANI GGCC 1 cut(s) 704
BspLI GGNNCC 2 cut(s) 158, 399
BspQI GCTCTTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 4 cut(s) 546, 600, 654, 697
BssECI CCNNGG 2 cut(s) 170, 342
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 170, 342
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 220, 361, 409
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 2 cut(s) 116, 260
BstC8I GCNNGC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 189, 569
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 104
BstMWI GCNNNNNNNGC 4 cut(s) 10, 314, 323, 425
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 22, 238, 329
BsuRI GGCC 1 cut(s) 704
BtsCI GGATG 2 cut(s) 189, 569
BtsIMutI CAGTG 5 cut(s) 420, 582, 636, 690, 739
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 34, 157
CseI GACGC 1 cut(s) 70
CviAII CATG 1 cut(s) 58
DrdI GACNNNNNNGTC 2 cut(s) 80, 632
DseDI GACNNNNNNGTC 2 cut(s) 80, 632
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 2 cut(s) 170, 342
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 34, 157
Eco57I CTGAAG 2 cut(s) 444, 660
Eco72I CACGTG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 312
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 170, 342
ErhI CCWWGG 2 cut(s) 170, 342
FaeI CATG 1 cut(s) 61
FaiI YATR 5 cut(s) 8, 21, 59, 236, 272
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 11, 252, 318
FokI GGATG 2 cut(s) 176, 556
Fsp4HI GCNGC 3 cut(s) 11, 252, 318
GlaI GCGC 1 cut(s) 140
GluI GCNGC 3 cut(s) 11, 252, 318
GsuI CTGGAG 1 cut(s) 714
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 704
HapII CCGG 3 cut(s) 44, 126, 146
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 2 cut(s) 85, 412
HindII GTYRAC 2 cut(s) 85, 412
HinfI GANTC 6 cut(s) 454, 508, 562, 616, 670, 724
HpaII CCGG 3 cut(s) 44, 126, 146
HphI GGTGA 9 cut(s) 115, 324, 355, 400, 448, 466, 502, 556, 664
Hpy166II GTNNAC 3 cut(s) 85, 160, 412
Hpy188I TCNGA 7 cut(s) 351, 453, 507, 561, 615, 669, 723
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 3 cut(s) 85, 160, 412
Hpy99I CGWCG 4 cut(s) 74, 77, 80, 86
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 3 cut(s) 220, 361, 409
HpyCH4IV ACGT 2 cut(s) 115, 259
HpyCH4V TGCA 4 cut(s) 10, 189, 254, 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 314, 323, 425
HpySE526I ACGT 2 cut(s) 115, 259
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 3 cut(s) 22, 238, 329
LweI GCATC 2 cut(s) 129, 198
MaeII ACGT 2 cut(s) 115, 259
MboII GAAGA 3 cut(s) 59, 175, 255
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 4 cut(s) 246, 297, 352, 588
MnlI CCTC 9 cut(s) 107, 110, 203, 209, 316, 370, 411, 546, 694
MspA1I CMGCKG 4 cut(s) 320, 385, 433, 487
MspI CCGG 3 cut(s) 44, 126, 146
MspR9I CCNGG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 4 cut(s) 10, 314, 323, 425
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 158, 399
NmuCI GTSAC 8 cut(s) 330, 361, 472, 526, 580, 634, 688, 737
PciSI GCTCTTC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 78, 81
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 6 cut(s) 454, 508, 562, 616, 670, 724
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 12, 253, 319
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
Ppu21I YACGTR 2 cut(s) 116, 260
Psp6I CCWGG 1 cut(s) 312
PspCI CACGTG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 158, 399
PspPI GGNCC 2 cut(s) 34, 157
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 4 cut(s) 320, 385, 433, 487
SalI GTCGAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 3 cut(s) 11, 252, 318
Sau96I GGNCC 2 cut(s) 34, 157
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 2 cut(s) 129, 198
SinI GGWCC 2 cut(s) 34, 157
Sse9I AATT 4 cut(s) 246, 297, 352, 588
SsiI CCGC 1 cut(s) 601
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 2 cut(s) 170, 342
TaaI ACNGT 3 cut(s) 220, 361, 409
TaiI ACGT 2 cut(s) 118, 262
TaqI TCGA 2 cut(s) 84, 295
TaqII GACCGA 1 cut(s) 51
TasI AATT 4 cut(s) 246, 297, 352, 588
TfiI GAWTC 6 cut(s) 454, 508, 562, 616, 670, 724
TscAI CASTG 4 cut(s) 427, 589, 643, 697
TseFI GTSAC 8 cut(s) 330, 361, 472, 526, 580, 634, 688, 737
TseI GCWGC 3 cut(s) 10, 251, 317
Tsp45I GTSAC 8 cut(s) 330, 361, 472, 526, 580, 634, 688, 737
TspRI CASTG 4 cut(s) 427, 589, 643, 697
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 34, 157
XapI RAATTY 2 cut(s) 352, 588
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.