pycom11g10120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0016158
Physical Location & Seq
Reverse (-)
8455183 .. 8457088
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10120.3

Sequence Viewer

Length: 606 bp
ATGGAGCACCACTGTCCGGCGGAGAAAGAACTTCATTCCCGCCCAAAGTCGTTGAAAATCCTCAGTCCCAAGAAACCCAAATCGCGACCCTCAGAAATTCAGAGTCCCACAAATTCTCGGTCACAATTTTCACAACCCAAAATGCAGCAGAGATTTTGGTCGCCTTACTCCTCTCGAGTACCCGAAGATCAAGCTTTTGCGACTGTCAGCGGCGGCGCAGCTTCGCAGCAGCAGCAGCCACAGCTGAAGCACCACCACAACAGCACTCCAAGAGCCAGCGCGGATGAACTCCCCGTCTACGACCAGCGATCCAGCACGGGAAAGAAAGAGGGTTCTTCAAGATCGGTGGAGAAGTGGGTCCATGCCATTCCGGTGATCGTGTTCTTCTGCCTCTTCGTGCTCTGGTGGTTCTCCGTCTCAGTAAAAGTGGCGAGCATCGACGGAAGAATTACATCTGTAGTCGAAACTGAGATACCGCTCCTTCTCAATGAGACTCGAATTGATATTGCAATCCTGGCAGCCTTGGCCATGTCACCAGTCGCCACAGTTCCTCAGAATCTCACTGTCAACAATGCAACTGAAGTTCCAAGTGGTGAGCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.34

Weight (kDa)

9.17

Isoelectric Point (pI)

68.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07860
fragaria_vesca FvH4_3g34151
malus_domestica MD11G1119900.v1.1
prunus_persica Prupe.6G090000_v2.0.a1
pyrus_communis pycom11g10120
rosa_chinensis RchiOBHm_Chr5g0061801
rosa_laevigata RLG00000035507
rosa_multiflora Rmu_sc0004134.1_g000010
rosa_roxburghii Rroxscaffold_1G00018930
rosa_rugosa Rorug05G0344100
rosa_samantha Rh5AG404900 Rh5BG417900 Rh5CG442400 Rh5DG432000
rosa_wichuraiana Rw5G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 297
AccII CGCG 2 cut(s) 85, 281
AciI CCGC 6 cut(s) 20, 40, 210, 213, 281, 476
AclWI GGATC 1 cut(s) 303
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 2 cut(s) 96, 112
AcuI CTGAAG 2 cut(s) 266, 600
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 55, 339
AjnI CCWGG 1 cut(s) 513
AluBI AGCT 3 cut(s) 194, 221, 244
AluI AGCT 3 cut(s) 194, 221, 244
Alw21I GWGCWC 2 cut(s) 9, 402
Alw26I GTCTC 2 cut(s) 421, 485
AlwI GGATC 1 cut(s) 303
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 1 cut(s) 525
ApeKI GCWGC 7 cut(s) 145, 218, 226, 229, 232, 235, 518
ApoI RAATTY 2 cut(s) 96, 112
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 2 cut(s) 218, 281
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 3 cut(s) 385, 525, 605
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 1 cut(s) 358
BalI TGGCCA 1 cut(s) 527
Bbv12I GWGCWC 2 cut(s) 9, 402
BbvI GCAGC 7 cut(s) 157, 230, 238, 241, 244, 247, 530
BciT130I CCWGG 1 cut(s) 515
BcoDI GTCTC 2 cut(s) 421, 485
BfmI CTRYAG 1 cut(s) 456
BisI GCNGC 9 cut(s) 146, 211, 214, 219, 227, 230, 233, 236, 519
BlsI GCNGC 9 cut(s) 147, 212, 215, 220, 228, 231, 234, 237, 520
Bme1390I CCNGG 1 cut(s) 515
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 515
BmsI GCATC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 522
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 536
BseBI CCWGG 1 cut(s) 515
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 5 cut(s) 76, 105, 432, 459, 566
BseNI ACTGG 1 cut(s) 536
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 7 cut(s) 157, 230, 238, 241, 244, 247, 530
Bsh1236I CGCG 2 cut(s) 85, 281
BshFI GGCC 1 cut(s) 527
BsiHKAI GWGCWC 2 cut(s) 9, 402
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 2 cut(s) 17, 371
BslFI GGGAC 2 cut(s) 51, 90
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 421, 485
BsmBI CGTCTC 1 cut(s) 421
BsmFI GGGAC 2 cut(s) 51, 90
BsnI GGCC 1 cut(s) 527
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 9, 402
Bsp143I GATC 4 cut(s) 187, 308, 341, 375
Bsp68I TCGCGA 1 cut(s) 85
BspACI CCGC 6 cut(s) 20, 40, 210, 213, 281, 476
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 5 cut(s) 75, 104, 431, 460, 565
BspFNI CGCG 2 cut(s) 85, 281
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 1 cut(s) 303
BsrBI CCGCTC 1 cut(s) 478
BsrI ACTGG 1 cut(s) 536
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 4 cut(s) 187, 308, 341, 375
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 4 cut(s) 14, 205, 547, 565
Bst6I CTCTTC 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 277, 433
BstDEI CTNAG 5 cut(s) 62, 91, 418, 468, 552
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 2 cut(s) 85, 281
BstHHI GCGC 2 cut(s) 218, 281
BstKTI GATC 4 cut(s) 190, 311, 344, 378
BstMAI GTCTC 2 cut(s) 421, 485
BstMBI GATC 4 cut(s) 187, 308, 341, 375
BstMWI GCNNNNNNNGC 5 cut(s) 232, 235, 241, 515, 524
BstNI CCWGG 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 513
BstSFI CTRYAG 1 cut(s) 456
BstUI CGCG 2 cut(s) 85, 281
BstV1I GCAGC 7 cut(s) 157, 230, 238, 241, 244, 247, 530
BsuRI GGCC 1 cut(s) 527
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 10, 561
BtuMI TCGCGA 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 277, 433
CfoI GCGC 2 cut(s) 218, 281
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 179
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 2 cut(s) 362, 529
CviJI RGCY 7 cut(s) 194, 221, 238, 244, 275, 521, 527
CviKI_1 RGCY 7 cut(s) 194, 221, 238, 244, 275, 521, 527
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 5 cut(s) 62, 91, 418, 468, 552
DpnI GATC 4 cut(s) 189, 310, 343, 377
DpnII GATC 4 cut(s) 187, 308, 341, 375
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
EciI GGCGGA 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 2 cut(s) 266, 600
Eco88I CYCGRG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 421
FaeI CATG 2 cut(s) 365, 532
FaiI YATR 2 cut(s) 363, 530
FaqI GGGAC 2 cut(s) 51, 90
FatI CATG 2 cut(s) 361, 528
FauI CCCGC 1 cut(s) 47
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 9 cut(s) 146, 211, 214, 219, 227, 230, 233, 236, 519
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 9 cut(s) 146, 211, 214, 219, 227, 230, 233, 236, 519
GlaI GCGC 2 cut(s) 217, 280
GluI GCNGC 9 cut(s) 146, 211, 214, 219, 227, 230, 233, 236, 519
HaeIII GGCC 1 cut(s) 527
HapII CCGG 2 cut(s) 17, 371
HhaI GCGC 2 cut(s) 218, 281
Hin1II CATG 2 cut(s) 365, 532
Hin6I GCGC 2 cut(s) 216, 279
HinP1I GCGC 2 cut(s) 216, 279
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 3 cut(s) 103, 493, 556
HpaII CCGG 2 cut(s) 17, 371
HphI GGTGA 3 cut(s) 385, 525, 605
Hpy166II GTNNAC 2 cut(s) 298, 568
Hpy188I TCNGA 3 cut(s) 94, 102, 555
Hpy188III TCNNGA 3 cut(s) 84, 174, 339
Hpy8I GTNNAC 2 cut(s) 298, 568
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 4 cut(s) 14, 205, 547, 565
HpyCH4V TGCA 3 cut(s) 145, 509, 575
HpyF10VI GCNNNNNNNGC 5 cut(s) 232, 235, 241, 515, 524
HpyF3I CTNAG 5 cut(s) 62, 91, 418, 468, 552
Hsp92II CATG 2 cut(s) 365, 532
HspAI GCGC 2 cut(s) 216, 279
Kzo9I GATC 4 cut(s) 187, 308, 341, 375
LmnI GCTCC 2 cut(s) 4, 483
LpnPI CCDG 9 cut(s) 30, 289, 317, 325, 384, 388, 500, 527, 549
Lsp1109I GCAGC 7 cut(s) 157, 230, 238, 241, 244, 247, 530
LweI GCATC 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 120, 531
MalI GATC 4 cut(s) 189, 310, 343, 377
MbiI CCGCTC 1 cut(s) 478
MboI GATC 4 cut(s) 187, 308, 341, 375
MboII GAAGA 5 cut(s) 197, 327, 376, 385, 456
MhlI GDGCHC 2 cut(s) 9, 402
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 5 cut(s) 96, 112, 125, 447, 498
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 2 cut(s) 112, 487
MnlI CCTC 6 cut(s) 71, 100, 181, 322, 401, 561
Mox20I TGGCCA 1 cut(s) 527
MscI TGGCCA 1 cut(s) 527
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 2 cut(s) 210, 244
MspI CCGG 2 cut(s) 17, 371
MspR9I CCNGG 1 cut(s) 515
MvaI CCWGG 1 cut(s) 515
MvnI CGCG 2 cut(s) 85, 281
MwoI GCNNNNNNNGC 5 cut(s) 232, 235, 241, 515, 524
NdeII GATC 4 cut(s) 187, 308, 341, 375
NlaIII CATG 2 cut(s) 365, 532
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 2 cut(s) 120, 531
NruI TCGCGA 1 cut(s) 85
PaeR7I CTCGAG 1 cut(s) 174
PfeI GAWTC 1 cut(s) 556
PkrI GCNGC 9 cut(s) 147, 212, 215, 220, 228, 231, 234, 237, 520
PleI GAGTC 2 cut(s) 111, 487
PpsI GAGTC 2 cut(s) 111, 487
Psp6I CCWGG 1 cut(s) 513
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 244
RruI TCGCGA 1 cut(s) 85
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 371
SatI GCNGC 9 cut(s) 146, 211, 214, 219, 227, 230, 233, 236, 519
Sau3AI GATC 4 cut(s) 187, 308, 341, 375
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 2 cut(s) 112, 487
ScrFI CCNGG 1 cut(s) 515
SduI GDGCHC 2 cut(s) 9, 402
SetI ASST 3 cut(s) 196, 223, 246
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 1 cut(s) 456
Sfr274I CTCGAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 358
SlaI CTCGAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 5 cut(s) 96, 112, 125, 447, 498
SsiI CCGC 6 cut(s) 20, 40, 210, 213, 281, 476
StyD4I CCNGG 1 cut(s) 513
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 4 cut(s) 14, 205, 547, 565
TaqI TCGA 4 cut(s) 175, 438, 462, 496
TaqII GACCGA 1 cut(s) 108
TasI AATT 5 cut(s) 96, 112, 125, 447, 498
TauI GCSGC 2 cut(s) 213, 216
TfiI GAWTC 1 cut(s) 556
TscAI CASTG 2 cut(s) 17, 568
TseFI GTSAC 2 cut(s) 120, 531
TseI GCWGC 7 cut(s) 145, 218, 226, 229, 232, 235, 518
Tsp45I GTSAC 2 cut(s) 120, 531
TspDTI ATGAA 2 cut(s) 23, 300
TspGWI ACGGA 2 cut(s) 403, 456
TspRI CASTG 2 cut(s) 17, 568
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 2 cut(s) 96, 112
XhoI CTCGAG 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.