RLG00000035507

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016158
Physical Location & Seq
Forward (+)
67828625 .. 67830469
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035507

Sequence Viewer

Length: 561 bp
ATGCGTATGCAGAAGAGATATGTGCCTTACTTGGAACGAGTGCCGGAAGAACAAGTCATGGATATCGCCGACGACGACGGCGTCGACCTAGAGAGCCTCCTCCCCTACGAGACACGTGGCATCACCGGAAAGAAATGGCACTCGTCGGTGAAGTGGGTCCACCCTATTCCTTGGGTTGTCCTCTTCTGCATCTTCGTCCTCTGGTGGTTCTCTTTCACAGTAAAAGTCGTGAGCATAGATGGAAGAATTGCTGCAATACGTGAAACTGATATACCACTCCTTCTCAACAACACTCGAATTGGTATCGCATTCCTGGCAGCTGAGGCAATGTCATCATTCGCCTTGGCTCGGAATTTTACTGTCACCAATGTAACTGAGGTTCAGCTGGTGAATACGGCTCCTCAAAATTTCACAGTCAACAATGCCACTGAAGCTCAGCTGGTGAGTAACCGAACTCAGAATCTCTCAGTCAAAAATGTCACTGAAGCTCAGCTGGTGAGTAAGCCAACTCAGAATCTTGCAGCCAACAATGTTACTGAAATTCAACTGGTGAGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.98

Weight (kDa)

6.13

Isoelectric Point (pI)

20.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07860
fragaria_vesca FvH4_3g34151
malus_domestica MD11G1119900.v1.1
prunus_persica Prupe.6G090000_v2.0.a1
pyrus_communis pycom11g10120
rosa_chinensis RchiOBHm_Chr5g0061801
rosa_laevigata RLG00000035507
rosa_multiflora Rmu_sc0004134.1_g000010
rosa_roxburghii Rroxscaffold_1G00018930
rosa_rugosa Rorug05G0344100
rosa_samantha Rh5AG404900 Rh5BG417900 Rh5CG442400 Rh5DG432000
rosa_wichuraiana Rw5G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 84
AcsI RAATTY 3 cut(s) 352, 406, 540
AcuI CTGAAG 2 cut(s) 450, 504
AcvI CACGTG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 545
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 6 cut(s) 320, 385, 434, 439, 488, 493
AluI AGCT 6 cut(s) 320, 385, 434, 439, 488, 493
Alw26I GTCTC 1 cut(s) 104
ApeKI GCWGC 3 cut(s) 251, 317, 521
ApoI RAATTY 3 cut(s) 352, 406, 540
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 6 cut(s) 115, 160, 355, 400, 454, 508
AvaII GGWCC 1 cut(s) 157
BbrPI CACGTG 1 cut(s) 116
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 238, 329, 533
BccI CCATC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 94, 411
BciT130I CCWGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 89
BisI GCNGC 3 cut(s) 252, 318, 522
BlpI GCTNAGC 2 cut(s) 435, 489
BlsI GCNGC 3 cut(s) 253, 319, 523
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 158, 399
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 2 cut(s) 129, 198
Bpu10I CCTNAGC 1 cut(s) 321
Bpu1102I GCTNAGC 2 cut(s) 435, 489
BsaAI YACGTR 2 cut(s) 116, 260
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 170, 342
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 170, 342
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 7 cut(s) 312, 366, 449, 470, 480, 503, 524
BseNI ACTGG 1 cut(s) 552
BseRI GAGGAG 2 cut(s) 89, 390
BseXI GCAGC 3 cut(s) 238, 329, 533
BsiSI CCGG 2 cut(s) 44, 126
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 308
Bsp1720I GCTNAGC 2 cut(s) 435, 489
BspCNI CTCAG 7 cut(s) 313, 367, 448, 469, 479, 502, 523
BspLI GGNNCC 2 cut(s) 158, 399
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 2 cut(s) 170, 342
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 170, 342
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 220, 361, 415
Bst6I CTCTTC 2 cut(s) 8, 188
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 2 cut(s) 116, 260
BstDEI CTNAG 7 cut(s) 321, 375, 435, 456, 466, 489, 510
BstMAI GTCTC 1 cut(s) 104
BstMWI GCNNNNNNNGC 3 cut(s) 314, 323, 431
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 238, 329, 533
BtsIMutI CAGTG 2 cut(s) 426, 480
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 70
CviAII CATG 1 cut(s) 58
DdeI CTNAG 7 cut(s) 321, 375, 435, 456, 466, 489, 510
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 8, 188
EarI CTCTTC 2 cut(s) 8, 188
Eco130I CCWWGG 2 cut(s) 170, 342
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 450, 504
Eco72I CACGTG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 312
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 170, 342
ErhI CCWWGG 2 cut(s) 170, 342
FaeI CATG 1 cut(s) 61
FaiI YATR 5 cut(s) 8, 21, 59, 236, 272
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 252, 318, 522
Fsp4HI GCNGC 3 cut(s) 252, 318, 522
FspBI CTAG 1 cut(s) 89
GluI GCNGC 3 cut(s) 252, 318, 522
HapII CCGG 2 cut(s) 44, 126
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 61
HincII GTYRAC 2 cut(s) 85, 418
HindII GTYRAC 2 cut(s) 85, 418
HinfI GANTC 2 cut(s) 460, 514
HpaII CCGG 2 cut(s) 44, 126
HphI GGTGA 6 cut(s) 115, 160, 355, 400, 454, 508
Hpy166II GTNNAC 3 cut(s) 85, 160, 418
Hpy188I TCNGA 3 cut(s) 351, 459, 513
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 3 cut(s) 85, 160, 418
Hpy99I CGWCG 5 cut(s) 74, 77, 80, 86, 148
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 3 cut(s) 220, 361, 415
HpyCH4IV ACGT 2 cut(s) 115, 259
HpyCH4V TGCA 4 cut(s) 10, 189, 254, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 323, 431
HpyF3I CTNAG 7 cut(s) 321, 375, 435, 456, 466, 489, 510
HpySE526I ACGT 2 cut(s) 115, 259
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 61
LmnI GCTCC 1 cut(s) 403
LpnPI CCDG 9 cut(s) 57, 139, 187, 299, 326, 371, 425, 479, 533
Lsp1109I GCAGC 3 cut(s) 238, 329, 533
LweI GCATC 2 cut(s) 129, 198
MaeI CTAG 1 cut(s) 89
MaeII ACGT 2 cut(s) 115, 259
MaeIII GTNAC 5 cut(s) 361, 370, 446, 478, 532
MboII GAAGA 5 cut(s) 25, 59, 175, 184, 255
MluCI AATT 5 cut(s) 246, 297, 352, 406, 540
MnlI CCTC 7 cut(s) 107, 110, 191, 209, 316, 370, 411
MspA1I CMGCKG 4 cut(s) 320, 385, 439, 493
MspI CCGG 2 cut(s) 44, 126
MspR9I CCNGG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 3 cut(s) 314, 323, 431
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 158, 399
NmuCI GTSAC 2 cut(s) 361, 478
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 78, 81
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 460, 514
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 253, 319, 523
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
Ppu21I YACGTR 2 cut(s) 116, 260
Psp6I CCWGG 1 cut(s) 312
PspCI CACGTG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 158, 399
PspPI GGNCC 1 cut(s) 157
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 4 cut(s) 320, 385, 439, 493
SalI GTCGAC 1 cut(s) 83
SatI GCNGC 3 cut(s) 252, 318, 522
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 314
SfaNI GCATC 2 cut(s) 129, 198
SinI GGWCC 1 cut(s) 157
Sse9I AATT 5 cut(s) 246, 297, 352, 406, 540
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 2 cut(s) 170, 342
TaaI ACNGT 3 cut(s) 220, 361, 415
TaiI ACGT 2 cut(s) 118, 262
TaqI TCGA 2 cut(s) 84, 295
TasI AATT 5 cut(s) 246, 297, 352, 406, 540
TfiI GAWTC 2 cut(s) 460, 514
TscAI CASTG 2 cut(s) 433, 487
TseFI GTSAC 2 cut(s) 361, 478
TseI GCWGC 3 cut(s) 251, 317, 521
Tsp45I GTSAC 2 cut(s) 361, 478
TspRI CASTG 2 cut(s) 433, 487
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 3 cut(s) 352, 406, 540
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.