Prupe.6G090000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016158
Physical Location & Seq
Reverse (-)
6161398 .. 6163304
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G090000.1

Sequence Viewer

Length: 462 bp
ATGCAGCAGAGACTTTGGTCTTACTCTTCTCGAGTGCCTGATCAAGAGGATACTGTTGTGGCCATTGGCAGCGCAGCTCCACAGCAACCGCAGCTGAAGCACCACCACCACCACACTCCAAGAACAAACCCAGATGGCCTTCCGCACTACGACCCGCGTTCCGGCTTCGGAAAGAAGGAGGGTTCTTGGAGATCGGTGTCGGCGGAGAAGTGGATCCATGTCATTCCTGTGATTGTGCTCTTCTGCCTCTTTGTGCTCTGGTGGTTCTCTGTTTCAGTAAAAGTGGTGAGCATTGATCGCAGAATTACAGCTATACGTGAAACTGAGATACCACTCCCTCTCAACGAGACTCGAATTGATATCGCAATCTTGGCAGCTGCTGCTATGTCACCAATAGCCTCGGTTCCTCAGAATCTCACAGTGAACAAGGCAACTGAAGTTCCAAGTGCTGAGAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.17

Weight (kDa)

9.2

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07860
fragaria_vesca FvH4_3g34151
malus_domestica MD11G1119900.v1.1
prunus_persica Prupe.6G090000_v2.0.a1
pyrus_communis pycom11g10120
rosa_chinensis RchiOBHm_Chr5g0061801
rosa_laevigata RLG00000035507
rosa_multiflora Rmu_sc0004134.1_g000010
rosa_roxburghii Rroxscaffold_1G00018930
rosa_rugosa Rorug05G0344100
rosa_samantha Rh5AG404900 Rh5BG417900 Rh5CG442400 Rh5DG432000
rosa_wichuraiana Rw5G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 157
AciI CCGC 4 cut(s) 89, 143, 155, 203
AclWI GGATC 2 cut(s) 208, 221
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 116, 456
AfiI CCNNNNNNNGG 1 cut(s) 161
AluBI AGCT 4 cut(s) 77, 94, 311, 377
AluI AGCT 4 cut(s) 77, 94, 311, 377
Alw21I GWGCWC 2 cut(s) 240, 258
Alw26I GTCTC 2 cut(s) 4, 341
AlwI GGATC 2 cut(s) 208, 221
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 2 cut(s) 60, 136
ApeKI GCWGC 7 cut(s) 4, 69, 74, 91, 374, 377, 380
AspLEI GCGC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 298, 381
AvaI CYCGRG 1 cut(s) 30
BaeI ACNNNNGTAYC 2 cut(s) 42, 75
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 213
Bbv12I GWGCWC 2 cut(s) 240, 258
BbvI GCAGC 7 cut(s) 16, 81, 86, 103, 364, 367, 386
BccI CCATC 1 cut(s) 128
BciVI GTATCC 1 cut(s) 43
BclI TGATCA 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 4, 341
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 7 cut(s) 5, 70, 75, 92, 375, 378, 381
BlsI GCNGC 7 cut(s) 6, 71, 76, 93, 376, 379, 382
BmeT110I CYCGRG 1 cut(s) 30
BmiI GGNNCC 2 cut(s) 215, 405
BoxI GACNNNNGTC 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 399
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 3 cut(s) 315, 422, 441
BseXI GCAGC 7 cut(s) 16, 81, 86, 103, 364, 367, 386
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 2 cut(s) 62, 138
BsiHKAI GWGCWC 2 cut(s) 240, 258
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 4, 341
BsnI GGCC 2 cut(s) 62, 138
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 240, 258
Bsp143I GATC 4 cut(s) 40, 191, 213, 295
BspACI CCGC 4 cut(s) 89, 143, 155, 203
BspANI GGCC 2 cut(s) 62, 138
BspCNI CTCAG 3 cut(s) 316, 421, 442
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 215, 405
BspPI GGATC 2 cut(s) 208, 221
BspQI GCTCTTC 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 4 cut(s) 40, 191, 213, 295
Bst4CI ACNGT 2 cut(s) 55, 421
Bst6I CTCTTC 2 cut(s) 31, 245
BstAPI GCANNNNNTGC 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 317
BstDEI CTNAG 3 cut(s) 324, 408, 450
BstFNI CGCG 1 cut(s) 157
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 4 cut(s) 43, 194, 216, 298
BstMAI GTCTC 2 cut(s) 4, 341
BstMBI GATC 4 cut(s) 40, 191, 213, 295
BstMWI GCNNNNNNNGC 5 cut(s) 91, 97, 297, 371, 380
BstPAI GACNNNNGTC 1 cut(s) 16
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 7 cut(s) 16, 81, 86, 103, 364, 367, 386
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 62, 138
BtsIMutI CAGTG 1 cut(s) 426
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 1 cut(s) 74
CviAII CATG 1 cut(s) 218
CviJI RGCY 8 cut(s) 62, 77, 94, 138, 165, 311, 377, 398
CviKI_1 RGCY 8 cut(s) 62, 77, 94, 138, 165, 311, 377, 398
DdeI CTNAG 3 cut(s) 324, 408, 450
DpnI GATC 4 cut(s) 42, 193, 215, 297
DpnII GATC 4 cut(s) 40, 191, 213, 295
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 31, 245
EarI CTCTTC 2 cut(s) 31, 245
EciI GGCGGA 1 cut(s) 218
Eco32I GATATC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 116, 456
Eco88I CYCGRG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 361
FaeI CATG 1 cut(s) 221
FaiI YATR 3 cut(s) 219, 314, 386
FatI CATG 1 cut(s) 217
FauI CCCGC 1 cut(s) 162
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 7 cut(s) 5, 70, 75, 92, 375, 378, 381
Fsp4HI GCNGC 7 cut(s) 5, 70, 75, 92, 375, 378, 381
GlaI GCGC 1 cut(s) 73
GluI GCNGC 7 cut(s) 5, 70, 75, 92, 375, 378, 381
HaeIII GGCC 2 cut(s) 62, 138
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 74
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 2 cut(s) 349, 412
HpaII CCGG 1 cut(s) 162
HphI GGTGA 2 cut(s) 298, 381
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 2 cut(s) 170, 411
Hpy188III TCNNGA 2 cut(s) 30, 44
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 2 cut(s) 149, 169
HpyCH4III ACNGT 2 cut(s) 55, 421
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 97, 297, 371, 380
HpyF3I CTNAG 3 cut(s) 324, 408, 450
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 4 cut(s) 40, 191, 213, 295
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 51, 144, 175, 240, 244
Lsp1109I GCAGC 7 cut(s) 16, 81, 86, 103, 364, 367, 386
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 387
MalI GATC 4 cut(s) 42, 193, 215, 297
MboI GATC 4 cut(s) 40, 191, 213, 295
MboII GAAGA 2 cut(s) 18, 232
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 240, 258
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 303, 354
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 343
MnlI CCTC 6 cut(s) 40, 172, 257, 348, 409, 417
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 2 cut(s) 94, 377
MspI CCGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 5 cut(s) 91, 97, 297, 371, 380
NdeII GATC 4 cut(s) 40, 191, 213, 295
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 2 cut(s) 215, 405
NmuCI GTSAC 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 7 cut(s) 6, 71, 76, 93, 376, 379, 382
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Ppu21I YACGTR 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 215, 405
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 1 cut(s) 213
PvuII CAGCTG 2 cut(s) 94, 377
RseI CAYNNNNRTG 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 245
SatI GCNGC 7 cut(s) 5, 70, 75, 92, 375, 378, 381
Sau3AI GATC 4 cut(s) 40, 191, 213, 295
SchI GAGTC 1 cut(s) 343
SduI GDGCHC 2 cut(s) 240, 258
SetI ASST 5 cut(s) 79, 96, 313, 319, 379
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 303, 354
SsiI CCGC 4 cut(s) 89, 143, 155, 203
TaaI ACNGT 2 cut(s) 55, 421
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 31, 352
TasI AATT 2 cut(s) 303, 354
TfiI GAWTC 1 cut(s) 412
TscAI CASTG 1 cut(s) 426
TseFI GTSAC 1 cut(s) 387
TseI GCWGC 7 cut(s) 4, 69, 74, 91, 374, 377, 380
Tsp45I GTSAC 1 cut(s) 387
TspRI CASTG 1 cut(s) 426
XhoI CTCGAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.