Rw5G038030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016158
Physical Location & Seq
Forward (+)
67234206 .. 67236125
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038030.1

Sequence Viewer

Length: 804 bp
ATGCGTAAGCAGAAGAGATATGTGCCTTACTTGGACCGAGTGCCGGAAGAACACGTCATGGATATCGCCGACGACGACGGCGTCGACCCAGACAGCCTCCTCCCCTACGAGACACGTGGCATCACCGGAAAGAAATGGCGCTCGTCGGAGAAGTGGGTCCACGCTATTCCTTGGGTTGTGCTCTTCTGCGTCTTCGTCCTCTGGTGGTTCTCTTTCACAGTAAAAGTTGTGAGCATAGATGGAAGAATTGCTGCAATACGTGAAACTGATATACCACTCCTTCTCAACAACACTCGAATTGGTATCGCATTCCTGGCAGCTGAGGCAATGTCACCATTCGCCTTGGCTCAGAATTTTACAGTCACCAATGTAACTGAGGTTCAGCTGGTGAATACGGCTCCTCAAAATTTCACAGTCAACAATGCCACTGAAGCTCAGCTGGTGAGTAACCGAACTCAGAATCTCTCAGTCAAAAATGTCACTGAAGCTCAGCTGGTGAATAAGCCAACTCAGAATCTTGCAACCAACAATGTTACTGAAATTCAACTGGTGAGTAAGCGAGCTCAGAATCTCACAGCCCACAAGGTCACTAAACGTCAACTGGTGAGTAAGCGAACTCAGAATCTTACATCCCACAATGTCACTGAAATTCAACTGGTGCGGAAGCGAACTCGGAATCTCACAGACAATAATGTCACTGAAGCTCAACTGGTGAGTAAGCGAACTCGGAATCTCACAGCCAACAATGTCACTGGAGTTGAGGCCGTGAGTTCAGCTTCTCAGAATCTCAGAGAATGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

30.12

Weight (kDa)

9.65

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07860
fragaria_vesca FvH4_3g34151
malus_domestica MD11G1119900.v1.1
prunus_persica Prupe.6G090000_v2.0.a1
pyrus_communis pycom11g10120
rosa_chinensis RchiOBHm_Chr5g0061801
rosa_laevigata RLG00000035507
rosa_multiflora Rmu_sc0004134.1_g000010
rosa_roxburghii Rroxscaffold_1G00018930
rosa_rugosa Rorug05G0344100
rosa_samantha Rh5AG404900 Rh5BG417900 Rh5CG442400 Rh5DG432000
rosa_wichuraiana Rw5G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 80, 692
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 661
AcsI RAATTY 4 cut(s) 352, 406, 540, 648
AcuI CTGAAG 3 cut(s) 450, 504, 720
AcvI CACGTG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 43
AflIII ACRYGT 2 cut(s) 52, 113
AgsI TTSAA 2 cut(s) 545, 653
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 9 cut(s) 320, 385, 434, 439, 488, 493, 563, 704, 776
AluI AGCT 9 cut(s) 320, 385, 434, 439, 488, 493, 563, 704, 776
Alw21I GWGCWC 2 cut(s) 183, 565
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 1 cut(s) 762
ApeKI GCWGC 2 cut(s) 251, 317
ApoI RAATTY 4 cut(s) 352, 406, 540, 648
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 34, 157
AsuHPI GGTGA 9 cut(s) 115, 324, 355, 400, 454, 508, 562, 616, 724
AvaII GGWCC 2 cut(s) 34, 157
BanII GRGCYC 1 cut(s) 565
BbrPI CACGTG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 2 cut(s) 183, 565
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 238, 329
BccI CCATC 1 cut(s) 233
BceAI ACGGC 3 cut(s) 94, 411, 749
BciT130I CCWGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 2 cut(s) 252, 318
BlpI GCTNAGC 2 cut(s) 435, 489
BlsI GCNGC 2 cut(s) 253, 319
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 2 cut(s) 34, 157
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 34, 157
BmiI GGNNCC 2 cut(s) 158, 399
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 774
Bpu10I CCTNAGC 1 cut(s) 321
Bpu1102I GCTNAGC 2 cut(s) 435, 489
BsaAI YACGTR 2 cut(s) 116, 260
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 170, 342
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 5 cut(s) 552, 606, 660, 714, 757
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 170, 342
BseGI GGATG 1 cut(s) 629
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 333
BseNI ACTGG 5 cut(s) 552, 606, 660, 714, 757
BseRI GAGGAG 2 cut(s) 89, 390
BseXI GCAGC 2 cut(s) 238, 329
BshFI GGCC 1 cut(s) 764
BsiHKAI GWGCWC 2 cut(s) 183, 565
BsiSI CCGG 2 cut(s) 44, 126
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 764
Bsp1286I GDGCHC 2 cut(s) 183, 565
Bsp1720I GCTNAGC 2 cut(s) 435, 489
BspACI CCGC 1 cut(s) 661
BspANI GGCC 1 cut(s) 764
BspLI GGNNCC 2 cut(s) 158, 399
BspQI GCTCTTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 5 cut(s) 552, 606, 660, 714, 757
BssECI CCNNGG 2 cut(s) 170, 342
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 170, 342
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 220, 361, 415
Bst6I CTCTTC 2 cut(s) 8, 188
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 2 cut(s) 116, 260
BstC8I GCNNGC 1 cut(s) 561
BstF5I GGATG 1 cut(s) 629
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 104
BstMWI GCNNNNNNNGC 3 cut(s) 314, 323, 431
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 238, 329
BstV2I GAAGAC 1 cut(s) 184
BsuRI GGCC 1 cut(s) 764
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 629
BtsIMutI CAGTG 6 cut(s) 426, 480, 642, 696, 750, 799
Cac8I GCNNGC 1 cut(s) 561
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 34, 157
CseI GACGC 2 cut(s) 70, 178
CviAII CATG 1 cut(s) 58
DrdI GACNNNNNNGTC 2 cut(s) 80, 692
DseDI GACNNNNNNGTC 2 cut(s) 80, 692
Eam1104I CTCTTC 2 cut(s) 8, 188
EarI CTCTTC 2 cut(s) 8, 188
Ecl136II GAGCTC 1 cut(s) 563
Eco130I CCWWGG 2 cut(s) 170, 342
Eco24I GRGCYC 1 cut(s) 565
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 34, 157
Eco53kI GAGCTC 1 cut(s) 563
Eco57I CTGAAG 3 cut(s) 450, 504, 720
Eco72I CACGTG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 312
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 170, 342
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 2 cut(s) 170, 342
FaeI CATG 1 cut(s) 61
FaiI YATR 4 cut(s) 21, 59, 236, 272
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 252, 318
FokI GGATG 1 cut(s) 616
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 2 cut(s) 252, 318
GlaI GCGC 1 cut(s) 140
GluI GCNGC 2 cut(s) 252, 318
GsuI CTGGAG 1 cut(s) 774
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 764
HapII CCGG 2 cut(s) 44, 126
HgaI GACGC 2 cut(s) 70, 178
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 3 cut(s) 85, 418, 599
HindII GTYRAC 3 cut(s) 85, 418, 599
HinfI GANTC 7 cut(s) 460, 514, 568, 622, 676, 730, 784
HpaII CCGG 2 cut(s) 44, 126
HphI GGTGA 9 cut(s) 115, 324, 355, 400, 454, 508, 562, 616, 724
Hpy166II GTNNAC 4 cut(s) 85, 160, 418, 599
Hpy8I GTNNAC 4 cut(s) 85, 160, 418, 599
Hpy99I CGWCG 5 cut(s) 74, 77, 80, 86, 148
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 3 cut(s) 220, 361, 415
HpyCH4IV ACGT 4 cut(s) 54, 115, 259, 595
HpyCH4V TGCA 2 cut(s) 254, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 323, 431
HpySE526I ACGT 4 cut(s) 54, 115, 259, 595
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 2 cut(s) 238, 329
LweI GCATC 1 cut(s) 129
MaeII ACGT 4 cut(s) 54, 115, 259, 595
MboII GAAGA 5 cut(s) 25, 59, 175, 184, 255
MhlI GDGCHC 2 cut(s) 183, 565
MluCI AATT 6 cut(s) 246, 297, 352, 406, 540, 648
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 7 cut(s) 107, 110, 209, 316, 370, 411, 754
MspA1I CMGCKG 4 cut(s) 320, 385, 439, 493
MspI CCGG 2 cut(s) 44, 126
MspR9I CCNGG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 3 cut(s) 314, 323, 431
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 158, 399
NmuCI GTSAC 8 cut(s) 330, 361, 478, 586, 640, 694, 748, 797
PciSI GCTCTTC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 78, 81
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 7 cut(s) 460, 514, 568, 622, 676, 730, 784
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 253, 319
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
Ppu21I YACGTR 2 cut(s) 116, 260
Psp124BI GAGCTC 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 312
PspCI CACGTG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 158, 399
PspPI GGNCC 2 cut(s) 34, 157
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 4 cut(s) 320, 385, 439, 493
SacI GAGCTC 1 cut(s) 565
SalI GTCGAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 2 cut(s) 252, 318
Sau96I GGNCC 2 cut(s) 34, 157
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 2 cut(s) 183, 565
SfaNI GCATC 1 cut(s) 129
SinI GGWCC 2 cut(s) 34, 157
Sse9I AATT 6 cut(s) 246, 297, 352, 406, 540, 648
SsiI CCGC 1 cut(s) 661
SstI GAGCTC 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 2 cut(s) 170, 342
TaaI ACNGT 3 cut(s) 220, 361, 415
TaiI ACGT 4 cut(s) 57, 118, 262, 598
TaqI TCGA 2 cut(s) 84, 295
TaqII GACCGA 1 cut(s) 51
TasI AATT 6 cut(s) 246, 297, 352, 406, 540, 648
TfiI GAWTC 7 cut(s) 460, 514, 568, 622, 676, 730, 784
TscAI CASTG 5 cut(s) 433, 487, 649, 703, 757
TseFI GTSAC 8 cut(s) 330, 361, 478, 586, 640, 694, 748, 797
TseI GCWGC 2 cut(s) 251, 317
Tsp45I GTSAC 8 cut(s) 330, 361, 478, 586, 640, 694, 748, 797
TspRI CASTG 5 cut(s) 433, 487, 649, 703, 757
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 34, 157
XapI RAATTY 4 cut(s) 352, 406, 540, 648
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.