MD11G1119900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016158
Physical Location & Seq
Reverse (-)
10912085 .. 10913606
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1119900.v1.1.491

Sequence Viewer

Length: 465 bp
ATGCAGCAGAGATTTTGGTCGCCTTACTCCTCTCGAGTACCCGAAGATCAAGCTTTTGCGACTGTCGGCGGCGGCGCAGCTTCGCAGCAGCAGCAGCCACAGCTGAAGCACCACCACAACAGCACTCCAAGAGCCAGCGCGGATGAACTCCCCGTCTACGACCCGCGATCCGGCGCGGGAAAGAAAGAGGATTCTTCAAGGTCGGTGGAGAAGTGGGTCCATGCCATTCCGGTGATCGTGTTCTTCTGCCTCTTCGTGCTCTGGTGGTTCTCCGTCTCAGTAAAAGTGGTGAACATCGACGGAAGAATTACATCTGTAGTCGAAACTGAGATACCGCTCCTTCTCAACGAGACTCGAATTGATATTGCAATCCTGGCAGCCGTGGCCATGTCACCAGTAGCCACAGTTCCTCAGAATCTCACGGTCAACAATGCAACTGAAGTTCCAAGTGGTGGGCGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.89

Weight (kDa)

6.41

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07860
fragaria_vesca FvH4_3g34151
malus_domestica MD11G1119900.v1.1
prunus_persica Prupe.6G090000_v2.0.a1
pyrus_communis pycom11g10120
rosa_chinensis RchiOBHm_Chr5g0061801
rosa_laevigata RLG00000035507
rosa_multiflora Rmu_sc0004134.1_g000010
rosa_roxburghii Rroxscaffold_1G00018930
rosa_rugosa Rorug05G0344100
rosa_samantha Rh5AG404900 Rh5BG417900 Rh5CG442400 Rh5DG432000
rosa_wichuraiana Rw5G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 452
AccBSI CCGCTC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 156
AccII CGCG 3 cut(s) 140, 166, 176
AciI CCGC 6 cut(s) 69, 72, 140, 164, 176, 335
AclWI GGATC 1 cut(s) 162
AcoI YGGCCR 1 cut(s) 384
AcuI CTGAAG 2 cut(s) 125, 459
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 170, 452
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 3 cut(s) 53, 80, 103
AluI AGCT 3 cut(s) 53, 80, 103
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 2 cut(s) 280, 344
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 7 cut(s) 4, 77, 85, 88, 91, 94, 377
AspLEI GCGC 3 cut(s) 77, 140, 176
AspS9I GGNCC 1 cut(s) 217
AsuHPI GGTGA 3 cut(s) 244, 301, 384
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 217
BalI TGGCCA 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 7 cut(s) 16, 89, 97, 100, 103, 106, 389
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 280, 344
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 9 cut(s) 5, 70, 73, 78, 86, 89, 92, 95, 378
BlsI GCNGC 9 cut(s) 6, 71, 74, 79, 87, 90, 93, 96, 379
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 452
Bse1I ACTGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 170, 452
BseMII CTCAG 3 cut(s) 291, 318, 425
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 7 cut(s) 16, 89, 97, 100, 103, 106, 389
Bsh1236I CGCG 3 cut(s) 140, 166, 176
BshFI GGCC 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 2 cut(s) 171, 230
BslI CCNNNNNNNGG 2 cut(s) 170, 452
BsmAI GTCTC 2 cut(s) 280, 344
BsmBI CGTCTC 1 cut(s) 280
BsnI GGCC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 46, 167, 234
BspACI CCGC 6 cut(s) 69, 72, 140, 164, 176, 335
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 3 cut(s) 290, 319, 424
BspFNI CGCG 3 cut(s) 140, 166, 176
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 1 cut(s) 162
BsrBI CCGCTC 1 cut(s) 337
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 3 cut(s) 46, 167, 234
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 3 cut(s) 64, 406, 424
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 277, 327, 411
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 3 cut(s) 140, 166, 176
BstHHI GCGC 3 cut(s) 77, 140, 176
BstKTI GATC 3 cut(s) 49, 170, 237
BstMAI GTCTC 2 cut(s) 280, 344
BstMBI GATC 3 cut(s) 46, 167, 234
BstMWI GCNNNNNNNGC 5 cut(s) 91, 94, 100, 374, 383
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 3 cut(s) 140, 166, 176
BstV1I GCAGC 7 cut(s) 16, 89, 97, 100, 103, 106, 389
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 3 cut(s) 77, 140, 176
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 2 cut(s) 221, 388
CviJI RGCY 8 cut(s) 53, 80, 97, 103, 134, 380, 386, 401
CviKI_1 RGCY 8 cut(s) 53, 80, 97, 103, 134, 380, 386, 401
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 3 cut(s) 277, 327, 411
DpnI GATC 3 cut(s) 48, 169, 236
DpnII GATC 3 cut(s) 46, 167, 234
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 125, 459
Eco88I CYCGRG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 2 cut(s) 224, 391
FaiI YATR 2 cut(s) 222, 389
FatI CATG 2 cut(s) 220, 387
FauI CCCGC 2 cut(s) 169, 171
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 9 cut(s) 5, 70, 73, 78, 86, 89, 92, 95, 378
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 9 cut(s) 5, 70, 73, 78, 86, 89, 92, 95, 378
GlaI GCGC 3 cut(s) 76, 139, 175
GluI GCNGC 9 cut(s) 5, 70, 73, 78, 86, 89, 92, 95, 378
HaeIII GGCC 1 cut(s) 386
HapII CCGG 2 cut(s) 171, 230
HhaI GCGC 3 cut(s) 77, 140, 176
Hin1II CATG 2 cut(s) 224, 391
Hin6I GCGC 3 cut(s) 75, 138, 174
HinP1I GCGC 3 cut(s) 75, 138, 174
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 3 cut(s) 191, 352, 415
HpaII CCGG 2 cut(s) 171, 230
HphI GGTGA 3 cut(s) 244, 301, 384
Hpy166II GTNNAC 3 cut(s) 157, 292, 427
Hpy188I TCNGA 1 cut(s) 414
Hpy188III TCNNGA 1 cut(s) 33
Hpy8I GTNNAC 3 cut(s) 157, 292, 427
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 3 cut(s) 64, 406, 424
HpyCH4V TGCA 3 cut(s) 4, 368, 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 94, 100, 374, 383
HpyF3I CTNAG 3 cut(s) 277, 327, 411
Hsp92II CATG 2 cut(s) 224, 391
HspAI GCGC 3 cut(s) 75, 138, 174
Kzo9I GATC 3 cut(s) 46, 167, 234
LmnI GCTCC 1 cut(s) 342
LpnPI CCDG 7 cut(s) 148, 184, 243, 247, 359, 386, 408
Lsp1109I GCAGC 7 cut(s) 16, 89, 97, 100, 103, 106, 389
MaeIII GTNAC 1 cut(s) 390
MalI GATC 3 cut(s) 48, 169, 236
MbiI CCGCTC 1 cut(s) 337
MboI GATC 3 cut(s) 46, 167, 234
MboII GAAGA 5 cut(s) 56, 186, 235, 244, 315
MhlI GDGCHC 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 2 cut(s) 306, 357
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 4 cut(s) 40, 181, 260, 420
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MslI CAYNNNNRTG 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 2 cut(s) 171, 230
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MvnI CGCG 3 cut(s) 140, 166, 176
MwoI GCNNNNNNNGC 5 cut(s) 91, 94, 100, 374, 383
NdeII GATC 3 cut(s) 46, 167, 234
NlaIII CATG 2 cut(s) 224, 391
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 390
PaeR7I CTCGAG 1 cut(s) 33
PfeI GAWTC 2 cut(s) 191, 415
PflMI CCANNNNNTGG 1 cut(s) 452
PkrI GCNGC 9 cut(s) 6, 71, 74, 79, 87, 90, 93, 96, 379
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 217
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 230
SatI GCNGC 9 cut(s) 5, 70, 73, 78, 86, 89, 92, 95, 378
Sau3AI GATC 3 cut(s) 46, 167, 234
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 261
SetI ASST 4 cut(s) 55, 82, 105, 203
SfcI CTRYAG 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 217
SlaI CTCGAG 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 2 cut(s) 306, 357
SsiI CCGC 6 cut(s) 69, 72, 140, 164, 176, 335
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 3 cut(s) 64, 406, 424
TaqI TCGA 4 cut(s) 34, 297, 321, 355
TasI AATT 2 cut(s) 306, 357
TauI GCSGC 2 cut(s) 72, 75
TfiI GAWTC 2 cut(s) 191, 415
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 7 cut(s) 4, 77, 85, 88, 91, 94, 377
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 1 cut(s) 159
TspGWI ACGGA 2 cut(s) 262, 315
Van91I CCANNNNNTGG 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 217
XhoI CTCGAG 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.