FvH4_3g35350

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015793
Physical Location & Seq
Forward (+)
30449302 .. 30451460
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35350.t1

Sequence Viewer

Length: 420 bp
ATGGCCAATGCAGCATCAGGGTTTGCTGTGGATGATGATTGCAAACTAAAGTTCTTGGACTTGAAGGCCAAAAGAACTTACCGCTTCATTGTATTCAAGATTGAGGAGAAACTGAAGCAGGTGGTTGTGGAGAAATTAGGTGAGCCAGCTCAAAGCTATGAAGAATTCACTGCAAGCCTTCCTGCTGATGAATGCAGATATGCTGTCTATGATTTCGACTTTGTGACTGCTGAAAACTGTCAGAAAAGTAGGATTTTCTTCATTGCATGGTCCCCTGATACATCAAGGGTGAGAAACAAGATGATTTATGCAAGCTCGAAGGACAGGTTCAAGAGAGAATTGGATGGTATCCAAATAGAGCTGCAGGCCACTGACCCAACTGAGATGGATCTTGATGTTATCAGAAGTCGTGCCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

140

Amino Acids

16.04

Weight (kDa)

5.31

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 7 - 138 3e-41 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35350
malus_domestica MD03G1098000.v1.1 MD11G1144300.v1.1 MD11G1144400.v1.1
prunus_persica Prupe.6G082200_v2.0.a1
pyrus_communis pycom03g08080
rosa_chinensis RchiOBHm_Chr5g0063461
rosa_laevigata RLG00000035636
rosa_multiflora Rmu_sc0016394.1_g000004
rosa_roxburghii Rroxscaffold_1G00017260
rosa_rugosa Rorug05G0357500
rosa_samantha Rh5BG431700 Rh5CG455000 Rh5DG445200
rosa_wichuraiana Rw5G039130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 134
AgsI TTSAA 3 cut(s) 64, 97, 331
AluBI AGCT 5 cut(s) 149, 156, 315, 361, 417
AluI AGCT 5 cut(s) 149, 156, 315, 361, 417
AlwI GGATC 1 cut(s) 396
AoxI GGCC 3 cut(s) 3, 66, 366
ApeKI GCWGC 2 cut(s) 11, 361
ApoI RAATTY 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 152, 301
AvaII GGWCC 1 cut(s) 270
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 23, 348
BccI CCATC 2 cut(s) 338, 379
BciVI GTATCC 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 109
BfuI GTATCC 1 cut(s) 359
BisI GCNGC 2 cut(s) 12, 362
BlsI GCNGC 2 cut(s) 13, 363
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 261
BseGI GGATG 2 cut(s) 37, 349
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 2 cut(s) 23, 348
BshFI GGCC 3 cut(s) 5, 68, 368
BslFI GGGAC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 3 cut(s) 5, 68, 368
Bsp143I GATC 1 cut(s) 388
BspACI CCGC 1 cut(s) 82
BspANI GGCC 3 cut(s) 5, 68, 368
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 272
BspMAI CTGCAG 1 cut(s) 366
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 261
BssMI GATC 1 cut(s) 388
Bst4CI ACNGT 1 cut(s) 239
BstC8I GCNNGC 5 cut(s) 147, 175, 313, 366, 415
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 37, 349
BstKTI GATC 1 cut(s) 391
BstMBI GATC 1 cut(s) 388
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 23, 348
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 3 cut(s) 5, 68, 368
BtsCI GGATG 2 cut(s) 37, 349
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 168, 369
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 5 cut(s) 147, 175, 313, 366, 415
Cfr13I GGNCC 1 cut(s) 270
CviAII CATG 1 cut(s) 267
DdeI CTNAG 1 cut(s) 381
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 164
FaeI CATG 1 cut(s) 270
FaiI YATR 5 cut(s) 159, 201, 210, 268, 309
FaqI GGGAC 1 cut(s) 256
FatI CATG 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 12, 362
FokI GGATG 2 cut(s) 44, 356
Fsp4HI GCNGC 2 cut(s) 12, 362
GluI GCNGC 2 cut(s) 12, 362
HaeIII GGCC 3 cut(s) 5, 68, 368
Hin1II CATG 1 cut(s) 270
HphI GGTGA 2 cut(s) 152, 301
Hpy188I TCNGA 2 cut(s) 243, 404
Hpy188III TCNNGA 3 cut(s) 97, 331, 392
HpyAV CCTTC 3 cut(s) 58, 188, 313
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 7 cut(s) 11, 42, 173, 195, 266, 311, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 381
Hsp92II CATG 1 cut(s) 270
Kzo9I GATC 1 cut(s) 388
LpnPI CCDG 7 cut(s) 3, 104, 159, 195, 288, 310, 350
Lsp1109I GCAGC 2 cut(s) 23, 348
LweI GCATC 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 2 cut(s) 173, 250
MflI RGATCY 1 cut(s) 388
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 134, 164, 338
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 97
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 388
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 109
PctI GAATGC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 13, 363
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 270
PstI CTGCAG 1 cut(s) 366
PsuI RGATCY 1 cut(s) 388
SatI GCNGC 2 cut(s) 12, 362
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 1 cut(s) 270
SetI ASST 8 cut(s) 123, 142, 151, 158, 317, 329, 363, 419
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 1 cut(s) 362
SinI GGWCC 1 cut(s) 270
Sse9I AATT 3 cut(s) 134, 164, 338
SsiI CCGC 1 cut(s) 82
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 216, 317
TasI AATT 3 cut(s) 134, 164, 338
TscAI CASTG 2 cut(s) 175, 376
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 11, 361
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 76, 174, 204, 250
TspRI CASTG 2 cut(s) 175, 376
VpaK11BI GGWCC 1 cut(s) 270
XapI RAATTY 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.