Rroxscaffold_1G00017260

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015793
Physical Location & Seq
Reverse (-)
21408705 .. 21409738
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017260.1

Sequence Viewer

Length: 483 bp
ATGTTGTTTTATTGTGCAAGATTTTTTGGTTGCATTGGGCAGGTCTTGGTGTTGGAAAATGACAATGCCAATGCGGCGTCGGGATTTGCTGTGGACGATGATTGCAAACTAAAGTTTTTGGACTTGAAGGCCAAAAGAACTTACCGCTTCATAGTATTCAAGATTGAGGAGAAGCAGAAGCAGGTGATCGTGGAGAAATTAGGTGAGCCAGCTCAAAGCTATGAAGATTTCACTGCAAGCCTTCCAGCTGATGAATGCAGATATGCTGTCTATGATTTTGATTTTGTGACTGCTGAAAACTGTCAGAAAAGCAGGATTTTCTTCATTGCATGGTCCCCTGATACATCAAAGGTGAGAAACAAGATGATTTATGCAAGCTCGAAGGACAGGTTCAAGAGAGAATTGGATGGTATCCAAATAGAGCTGCAGGCCACTGACCCAACTGAGATGGATCTTGATGTTATTAGAAGTCGTGCCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

160

Amino Acids

18.43

Weight (kDa)

5.14

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 28 - 159 1.9e-41 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35350
malus_domestica MD03G1098000.v1.1 MD11G1144300.v1.1 MD11G1144400.v1.1
prunus_persica Prupe.6G082200_v2.0.a1
pyrus_communis pycom03g08080
rosa_chinensis RchiOBHm_Chr5g0063461
rosa_laevigata RLG00000035636
rosa_multiflora Rmu_sc0016394.1_g000004
rosa_roxburghii Rroxscaffold_1G00017260
rosa_rugosa Rorug05G0357500
rosa_samantha Rh5BG431700 Rh5CG455000 Rh5DG445200
rosa_wichuraiana Rw5G039130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 172
Acc36I ACCTGC 2 cut(s) 31, 172
AciI CCGC 2 cut(s) 74, 145
AclWI GGATC 1 cut(s) 459
AcyI GRCGYC 1 cut(s) 77
AgsI TTSAA 3 cut(s) 127, 160, 394
AluBI AGCT 6 cut(s) 212, 219, 248, 378, 424, 480
AluI AGCT 6 cut(s) 212, 219, 248, 378, 424, 480
AlwI GGATC 1 cut(s) 459
AoxI GGCC 2 cut(s) 129, 429
ApeKI GCWGC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 3 cut(s) 196, 215, 364
AvaII GGWCC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 411
BccI CCATC 2 cut(s) 401, 442
BciVI GTATCC 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 425
BfuAI ACCTGC 2 cut(s) 31, 172
BfuI GTATCC 1 cut(s) 422
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 2 cut(s) 75, 425
BlsI GCNGC 2 cut(s) 76, 426
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 324
BseGI GGATG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 411
BshFI GGCC 2 cut(s) 131, 431
BslFI GGGAC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 2 cut(s) 131, 431
Bsp143I GATC 2 cut(s) 186, 451
BspACI CCGC 2 cut(s) 74, 145
BspANI GGCC 2 cut(s) 131, 431
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 335
BspMAI CTGCAG 1 cut(s) 429
BspMI ACCTGC 2 cut(s) 31, 172
BspPI GGATC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 324
BssMI GATC 2 cut(s) 186, 451
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 77
BstC8I GCNNGC 5 cut(s) 210, 238, 376, 429, 478
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 189, 454
BstMBI GATC 2 cut(s) 186, 451
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 2 cut(s) 131, 431
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 231, 432
BveI ACCTGC 2 cut(s) 31, 172
Cac8I GCNNGC 5 cut(s) 210, 238, 376, 429, 478
Cfr13I GGNCC 1 cut(s) 333
CseI GACGC 1 cut(s) 66
CviAII CATG 1 cut(s) 330
DdeI CTNAG 1 cut(s) 444
DpnI GATC 2 cut(s) 188, 453
DpnII GATC 2 cut(s) 186, 451
Eco47I GGWCC 1 cut(s) 333
FaeI CATG 1 cut(s) 333
FaiI YATR 6 cut(s) 152, 222, 264, 273, 331, 372
FaqI GGGAC 1 cut(s) 319
FatI CATG 1 cut(s) 329
Fnu4HI GCNGC 2 cut(s) 75, 425
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 75, 425
GluI GCNGC 2 cut(s) 75, 425
HaeIII GGCC 2 cut(s) 131, 431
HgaI GACGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 1 cut(s) 333
HphI GGTGA 3 cut(s) 196, 215, 364
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 4 cut(s) 81, 160, 394, 455
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 3 cut(s) 121, 251, 376
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 8 cut(s) 17, 33, 105, 236, 258, 329, 374, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 444
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 333
Kzo9I GATC 2 cut(s) 186, 451
LpnPI CCDG 8 cut(s) 26, 167, 222, 258, 298, 351, 373, 413
Lsp1109I GCAGC 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 188, 453
MboI GATC 2 cut(s) 186, 451
MboII GAAGA 2 cut(s) 236, 313
MflI RGATCY 1 cut(s) 451
MluCI AATT 2 cut(s) 197, 401
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 2 cut(s) 186, 451
NlaIII CATG 1 cut(s) 333
NlaIV GGNNCC 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 286
PaqCI CACCTGC 1 cut(s) 172
PctI GAATGC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 76, 426
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 1 cut(s) 333
PstI CTGCAG 1 cut(s) 429
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 248
SatI GCNGC 2 cut(s) 75, 425
Sau3AI GATC 2 cut(s) 186, 451
Sau96I GGNCC 1 cut(s) 333
SfcI CTRYAG 1 cut(s) 425
SinI GGWCC 1 cut(s) 333
Sse9I AATT 2 cut(s) 197, 401
SsiI CCGC 2 cut(s) 74, 145
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 380
TasI AATT 2 cut(s) 197, 401
TauI GCSGC 1 cut(s) 77
TscAI CASTG 2 cut(s) 238, 439
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 4 cut(s) 139, 237, 267, 313
TspRI CASTG 2 cut(s) 238, 439
VpaK11BI GGWCC 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.