Rh5BG431700

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015793
Physical Location & Seq
Forward (+)
69619420 .. 69625102
5683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG431700.1

Sequence Viewer

Length: 456 bp
ATGCACCTAACATCTATTTCTGTTTCATCCTATGATCAGGCCAATGCGGCGTCGGGATTTGCTGTGGATGATGATTGCAAACTAAAGTTCTTGGACTTGAAGGCCAAAAGAACTTACCGCTTCATAGTATTCAAGATTGAGGAGAAACAGAAGCAGGTGATTGTGGAGAAATTAGGTGAGCCAGCTCAAAGCTATGAAGATTTCACTGCAAGCCTTCCAGCTGATGAATGCAGATATGCTGTCTATGATTTTGATTTTGTGACTGCTGAAAACTGTCAGAAAAGCAGGATTTTCTTCATTGCATGGTCCCCTGATACATCAAAGGTGAGAAACAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAATTGGATGGTATCCAAATAGAGCTGCAGGCCACTGACCCAACTGAGATGGATCTTGATGTTATCAGAAGTCGTGCCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

151

Amino Acids

17.35

Weight (kDa)

5.27

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 19 - 150 1.6e-41 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35350
malus_domestica MD03G1098000.v1.1 MD11G1144300.v1.1 MD11G1144400.v1.1
prunus_persica Prupe.6G082200_v2.0.a1
pyrus_communis pycom03g08080
rosa_chinensis RchiOBHm_Chr5g0063461
rosa_laevigata RLG00000035636
rosa_multiflora Rmu_sc0016394.1_g000004
rosa_roxburghii Rroxscaffold_1G00017260
rosa_rugosa Rorug05G0357500
rosa_samantha Rh5BG431700 Rh5CG455000 Rh5DG445200
rosa_wichuraiana Rw5G039130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
AciI CCGC 2 cut(s) 47, 118
AclWI GGATC 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 3 cut(s) 100, 133, 367
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 6 cut(s) 185, 192, 221, 351, 397, 453
AluI AGCT 6 cut(s) 185, 192, 221, 351, 397, 453
AlwI GGATC 1 cut(s) 432
AoxI GGCC 3 cut(s) 39, 102, 402
ApeKI GCWGC 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 3 cut(s) 169, 188, 337
AvaII GGWCC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 384
BccI CCATC 2 cut(s) 374, 415
BciVI GTATCC 1 cut(s) 395
BclI TGATCA 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 145
BfuI GTATCC 1 cut(s) 395
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 2 cut(s) 48, 398
BlsI GCNGC 2 cut(s) 49, 399
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 3 cut(s) 26, 73, 385
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 408
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 384
BshFI GGCC 3 cut(s) 41, 104, 404
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 3 cut(s) 41, 104, 404
Bsp143I GATC 2 cut(s) 34, 424
BspACI CCGC 2 cut(s) 47, 118
BspANI GGCC 3 cut(s) 41, 104, 404
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 308
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 2 cut(s) 34, 424
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 5 cut(s) 183, 211, 349, 402, 451
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 26, 73, 385
BstKTI GATC 2 cut(s) 37, 427
BstMBI GATC 2 cut(s) 34, 424
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 3 cut(s) 41, 104, 404
BtsCI GGATG 3 cut(s) 26, 73, 385
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 405
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 5 cut(s) 183, 211, 349, 402, 451
Cfr13I GGNCC 1 cut(s) 306
CseI GACGC 1 cut(s) 39
CviAII CATG 1 cut(s) 303
DdeI CTNAG 1 cut(s) 417
DpnI GATC 2 cut(s) 36, 426
DpnII GATC 2 cut(s) 34, 424
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 1 cut(s) 306
FaiI YATR 7 cut(s) 33, 125, 195, 237, 246, 304, 345
FaqI GGGAC 1 cut(s) 292
FatI CATG 1 cut(s) 302
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 48, 398
FokI GGATG 3 cut(s) 13, 80, 392
Fsp4HI GCNGC 2 cut(s) 48, 398
GluI GCNGC 2 cut(s) 48, 398
HaeIII GGCC 3 cut(s) 41, 104, 404
HgaI GACGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 306
HphI GGTGA 3 cut(s) 169, 188, 337
Hpy188I TCNGA 2 cut(s) 279, 440
Hpy188III TCNNGA 4 cut(s) 54, 133, 367, 428
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 94, 224
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 7 cut(s) 4, 78, 209, 231, 302, 347, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 417
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 34, 424
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 8 cut(s) 23, 140, 195, 231, 271, 324, 346, 386
Lsp1109I GCAGC 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 36, 426
MboI GATC 2 cut(s) 34, 424
MboII GAAGA 2 cut(s) 209, 286
MflI RGATCY 1 cut(s) 424
MluCI AATT 2 cut(s) 170, 374
MnlI CCTC 1 cut(s) 133
MspA1I CMGCKG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 34, 424
NlaIII CATG 1 cut(s) 306
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 145
PctI GAATGC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 49, 399
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 306
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 221
SatI GCNGC 2 cut(s) 48, 398
Sau3AI GATC 2 cut(s) 34, 424
Sau96I GGNCC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 306
Sse9I AATT 2 cut(s) 170, 374
SsiI CCGC 2 cut(s) 47, 118
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 275
TasI AATT 2 cut(s) 170, 374
TauI GCSGC 1 cut(s) 50
TscAI CASTG 2 cut(s) 211, 412
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 5 cut(s) 15, 112, 210, 240, 286
TspRI CASTG 2 cut(s) 211, 412
VpaK11BI GGWCC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.