MD03G1098000.v1.1

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015793
Physical Location & Seq
Reverse (-)
8414852 .. 8417730
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1098000.v1.1.491

Sequence Viewer

Length: 420 bp
ATGGCTAATGCAGCATCCGGATTTGCTGTGAATGATGACTGCAAGCTGAAGTTTCTGGAATTGAAGGCTAAGAGAACATATCGCTTCATAGTGTTCAAGATTGACGAGAAGAAAAATGAGGTGATTGTGGAGAAACTCGGTGAGCCAGCTGAAAGCTATGAAGACTTTACTGCAAACCTTCCTGATAATGAATGCAGATATGCTGTCTATGATTTTGACTTTGTGACTGTAGAGAACTGTCAGAAAAGCAGGATTTTCTTCGTCGGATGGTCTCCCGACACAGCAAGGGTGAGAAACAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAATTGGACGGCATACAAGTCGAGCTGCAGGCCACTGATCCATCTGAGATAGGTCTCGATGTTATCAAAAGTCGTGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

140

Amino Acids

15.99

Weight (kDa)

5.33

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 7 - 138 1.1e-42 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35350
malus_domestica MD03G1098000.v1.1 MD11G1144300.v1.1 MD11G1144400.v1.1
prunus_persica Prupe.6G082200_v2.0.a1
pyrus_communis pycom03g08080
rosa_chinensis RchiOBHm_Chr5g0063461
rosa_laevigata RLG00000035636
rosa_multiflora Rmu_sc0016394.1_g000004
rosa_roxburghii Rroxscaffold_1G00017260
rosa_rugosa Rorug05G0357500
rosa_samantha Rh5BG431700 Rh5CG455000 Rh5DG445200
rosa_wichuraiana Rw5G039130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 17
AclWI GGATC 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 3 cut(s) 64, 97, 331
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 5 cut(s) 46, 149, 156, 315, 361
AluI AGCT 5 cut(s) 46, 149, 156, 315, 361
Alw26I GTCTC 2 cut(s) 276, 395
AlwI GGATC 1 cut(s) 368
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 2 cut(s) 11, 361
AsuHPI GGTGA 3 cut(s) 133, 152, 301
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 23, 348
BccI CCATC 2 cut(s) 261, 385
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BcoDI GTCTC 2 cut(s) 276, 395
BfmI CTRYAG 2 cut(s) 228, 362
BisI GCNGC 2 cut(s) 12, 362
BlsI GCNGC 2 cut(s) 13, 363
BmsI GCATC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 276, 395
BsaJI CCNNGG 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 324
BseAI TCCGGA 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 14, 272
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 372
BseXI GCAGC 2 cut(s) 23, 348
BshFI GGCC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 2 cut(s) 276, 395
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 1 cut(s) 368
Bso31I GGTCTC 2 cut(s) 276, 395
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 1 cut(s) 373
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 373
BspEI TCCGGA 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 366
BspPI GGATC 1 cut(s) 368
BspTNI GGTCTC 2 cut(s) 276, 395
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 229, 239
BstC8I GCNNGC 4 cut(s) 44, 147, 313, 366
BstDEI CTNAG 2 cut(s) 69, 381
BstF5I GGATG 2 cut(s) 14, 272
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 2 cut(s) 276, 395
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 2 cut(s) 228, 362
BstV1I GCAGC 2 cut(s) 23, 348
BstV2I GAAGAC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 2 cut(s) 14, 272
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 4 cut(s) 44, 147, 313, 366
CviJI RGCY 9 cut(s) 5, 46, 68, 145, 149, 156, 315, 361, 368
CviKI_1 RGCY 9 cut(s) 5, 46, 68, 145, 149, 156, 315, 361, 368
DdeI CTNAG 2 cut(s) 69, 381
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 2 cut(s) 276, 395
Eco57I CTGAAG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaiI YATR 7 cut(s) 79, 89, 159, 201, 210, 309, 350
Fnu4HI GCNGC 2 cut(s) 12, 362
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 12, 362
GluI GCNGC 2 cut(s) 12, 362
HaeIII GGCC 1 cut(s) 368
HapII CCGG 1 cut(s) 18
HpaII CCGG 1 cut(s) 18
HphI GGTGA 3 cut(s) 133, 152, 301
Hpy188I TCNGA 3 cut(s) 243, 266, 382
Hpy188III TCNNGA 7 cut(s) 18, 56, 97, 182, 275, 331, 392
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 58, 188
HpyCH4III ACNGT 2 cut(s) 229, 239
HpyCH4V TGCA 7 cut(s) 11, 42, 173, 195, 311, 364, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 69, 381
Kpn2I TCCGGA 1 cut(s) 17
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 31, 41, 159, 195, 235, 310, 350
Lsp1109I GCAGC 2 cut(s) 23, 348
LweI GCATC 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 3 cut(s) 121, 173, 250
MluCI AATT 2 cut(s) 59, 338
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 1 cut(s) 112
MroI TCCGGA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 223
PctI GAATGC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 13, 363
PstI CTGCAG 1 cut(s) 366
PvuII CAGCTG 1 cut(s) 149
SatI GCNGC 2 cut(s) 12, 362
Sau3AI GATC 1 cut(s) 373
SetI ASST 9 cut(s) 48, 123, 151, 158, 180, 317, 329, 363, 391
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 2 cut(s) 228, 362
Sse9I AATT 2 cut(s) 59, 338
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 229, 239
TaqI TCGA 2 cut(s) 357, 393
TasI AATT 2 cut(s) 59, 338
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 11, 361
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 76, 174, 204
TspRI CASTG 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.