MD11G1144300.v1.1

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015793
Physical Location & Seq
Reverse (-)
13399011 .. 13402296
3286 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1144300.v1.1.491

Sequence Viewer

Length: 402 bp
ATGAGTGCTAACGCAGCGTCTGGATTTTCTGTGGATGATGACTGCAAGCTGAAGTTTCTGGAATTGAAGGCAAAGAGAACATATCGCTTCATAGTGTTCAAGATTGACGAGAAGAAAAATGAGGTGATTGTGGAGAAACTCGGTTGGCCAGCTGAAAGCTACGAAGACTTTACTGCAAACCTTCCTGATAATGAATGCAGATATGCTGTCTATGATTTTGACTTTGTGACTGCAGAGAATTGTCAGAAAAGCAGGATTTTCTTCATCGGATGGTCTCCCGACACAGCAAGGGTGAGAAACAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAATTGGATGGCATACAAGTCGAGCTGCTGGCTATTGATCCGACCCAGTGGCCATTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

134

Amino Acids

15.51

Weight (kDa)

5.27

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 8 - 126 7.2e-38 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35350
malus_domestica MD03G1098000.v1.1 MD11G1144300.v1.1 MD11G1144400.v1.1
prunus_persica Prupe.6G082200_v2.0.a1
pyrus_communis pycom03g08080
rosa_chinensis RchiOBHm_Chr5g0063461
rosa_laevigata RLG00000035636
rosa_multiflora Rmu_sc0016394.1_g000004
rosa_roxburghii Rroxscaffold_1G00017260
rosa_rugosa Rorug05G0357500
rosa_samantha Rh5BG431700 Rh5CG455000 Rh5DG445200
rosa_wichuraiana Rw5G039130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 2 cut(s) 146, 389
AcuI CTGAAG 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 3 cut(s) 67, 100, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 5 cut(s) 49, 152, 159, 318, 364
AluI AGCT 5 cut(s) 49, 152, 159, 318, 364
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 1 cut(s) 371
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 2 cut(s) 146, 389
ApeKI GCWGC 2 cut(s) 14, 364
AsuHPI GGTGA 2 cut(s) 136, 304
BalI TGGCCA 2 cut(s) 148, 391
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 26, 351
BccI CCATC 2 cut(s) 264, 341
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BcoDI GTCTC 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 2 cut(s) 15, 365
BlsI GCNGC 2 cut(s) 16, 366
BmrI ACTGGG 1 cut(s) 379
BmuI ACTGGG 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 3 cut(s) 40, 275, 352
BseLI CCNNNNNNNGG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 385
BseXI GCAGC 2 cut(s) 26, 351
BshFI GGCC 2 cut(s) 148, 391
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 2 cut(s) 148, 391
Bso31I GGTCTC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 376
BspANI GGCC 2 cut(s) 148, 391
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 279
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 1 cut(s) 321
BstC8I GCNNGC 4 cut(s) 47, 150, 316, 369
BstF5I GGATG 3 cut(s) 40, 275, 352
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 26, 351
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 2 cut(s) 148, 391
BtsCI GGATG 3 cut(s) 40, 275, 352
BtsIMutI CAGTG 1 cut(s) 392
Cac8I GCNNGC 4 cut(s) 47, 150, 316, 369
CaiI CAGNNNCTG 1 cut(s) 20
CseI GACGC 1 cut(s) 6
CviJI RGCY 8 cut(s) 49, 148, 152, 159, 318, 364, 371, 391
CviKI_1 RGCY 8 cut(s) 49, 148, 152, 159, 318, 364, 371, 391
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
EaeI YGGCCR 2 cut(s) 146, 389
Eco130I CCWWGG 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaiI YATR 6 cut(s) 82, 92, 204, 213, 312, 353
Fnu4HI GCNGC 2 cut(s) 15, 365
FokI GGATG 3 cut(s) 47, 282, 359
Fsp4HI GCNGC 2 cut(s) 15, 365
GluI GCNGC 2 cut(s) 15, 365
HaeIII GGCC 2 cut(s) 148, 391
HgaI GACGC 1 cut(s) 6
HphI GGTGA 2 cut(s) 136, 304
Hpy188I TCNGA 4 cut(s) 246, 269, 381, 401
Hpy188III TCNNGA 6 cut(s) 21, 59, 100, 185, 278, 334
HpyAV CCTTC 2 cut(s) 61, 191
HpyCH4V TGCA 5 cut(s) 45, 176, 198, 233, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 8 cut(s) 6, 44, 162, 198, 238, 313, 353, 398
Lsp1109I GCAGC 2 cut(s) 26, 351
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 3 cut(s) 124, 176, 253
MlsI TGGCCA 2 cut(s) 148, 391
MluCI AATT 3 cut(s) 62, 238, 341
MluNI TGGCCA 2 cut(s) 148, 391
MnlI CCTC 1 cut(s) 115
Mox20I TGGCCA 2 cut(s) 148, 391
MscI TGGCCA 2 cut(s) 148, 391
Msp20I TGGCCA 2 cut(s) 148, 391
MspA1I CMGCKG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 226
PctI GAATGC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 16, 366
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 152
SatI GCNGC 2 cut(s) 15, 365
Sau3AI GATC 1 cut(s) 376
SetI ASST 8 cut(s) 51, 126, 154, 161, 183, 320, 332, 366
SfcI CTRYAG 1 cut(s) 231
Sse9I AATT 3 cut(s) 62, 238, 341
StyI CCWWGG 1 cut(s) 321
TaqI TCGA 1 cut(s) 360
TasI AATT 3 cut(s) 62, 238, 341
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 2 cut(s) 14, 364
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 79, 207, 253
TspRI CASTG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.