Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016394.1

Orthogroup ID

OG0015793

Physical Location & Seq

Genomic Coordinates Reverse (-)

13030 .. 14643

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016394.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggccaatgcggcgtcgggatttgctgtggatgatgattgcaaactaaagttcttggacttgaaggccaaaagaacttaccgcttcatagtattcaagattgaggagaagcagaagcaggtgatcgtggagaaattaggtgagccagctcaaagctatgaagatttcactgcaagccttccagctgatgaatgcagatatgctgtctatgattttgattttgtgactgctgaaaactgtcagaaaagcaggattttcttcattgcatggtcccctgatacatcaaaggtgagaaacaagatgatttatgcaagctccaaggacaggttcaagagagaattggatggtatccaaatagagctgcaggccactgacccaactgagatggatcttgatgttatcagaagtcgtgccagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

139

Amino Acids

16.03

Weight (kDa)

5.3

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015793)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35350
malus_domestica	MD03G1098000.v1.1 MD11G1144300.v1.1 MD11G1144400.v1.1
prunus_persica	Prupe.6G082200_v2.0.a1
pyrus_communis	pycom03g08080
rosa_chinensis	RchiOBHm_Chr5g0063461
rosa_laevigata	RLG00000035636
rosa_multiflora	Rmu_sc0016394.1_g000004
rosa_roxburghii	Rroxscaffold_1G00017260
rosa_rugosa	Rorug05G0357500
rosa_samantha	Rh5BG431700 Rh5CG455000 Rh5DG445200
rosa_wichuraiana	Rw5G039130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	109
Acc36I	ACCTGC	1 cut(s)	109
AciI	CCGC	2 cut(s)	11, 82
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	64, 97, 331
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	6 cut(s)	149, 156, 185, 315, 361, 417
AluI	AGCT	6 cut(s)	149, 156, 185, 315, 361, 417
AlwI	GGATC	1 cut(s)	396
AoxI	GGCC	3 cut(s)	3, 66, 366
ApeKI	GCWGC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	133, 152, 301
AvaII	GGWCC	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	338, 379
BciVI	GTATCC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	359
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	12, 362
BlsI	GCNGC	2 cut(s)	13, 363
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	37, 349
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	348
BshFI	GGCC	3 cut(s)	5, 68, 368
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	5, 68, 368
Bsp143I	GATC	2 cut(s)	123, 388
BspACI	CCGC	2 cut(s)	11, 82
BspANI	GGCC	3 cut(s)	5, 68, 368
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	272
BspMAI	CTGCAG	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	123, 388
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	147, 175, 313, 366, 415
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	37, 349
BstKTI	GATC	2 cut(s)	126, 391
BstMBI	GATC	2 cut(s)	123, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	359
BsuRI	GGCC	3 cut(s)	5, 68, 368
BtsCI	GGATG	2 cut(s)	37, 349
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 369
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	5 cut(s)	147, 175, 313, 366, 415
Cfr13I	GGNCC	1 cut(s)	270
CseI	GACGC	1 cut(s)	3
CviAII	CATG	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	125, 390
DpnII	GATC	2 cut(s)	123, 388
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	270
FaiI	YATR	6 cut(s)	89, 159, 201, 210, 268, 309
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	12, 362
FokI	GGATG	2 cut(s)	44, 356
Fsp4HI	GCNGC	2 cut(s)	12, 362
GluI	GCNGC	2 cut(s)	12, 362
HaeIII	GGCC	3 cut(s)	5, 68, 368
HgaI	GACGC	1 cut(s)	3
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	270
HphI	GGTGA	3 cut(s)	133, 152, 301
Hpy188I	TCNGA	2 cut(s)	243, 404
Hpy188III	TCNNGA	4 cut(s)	18, 97, 331, 392
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	58, 188
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	6 cut(s)	42, 173, 195, 266, 311, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	123, 388
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	7 cut(s)	104, 159, 195, 235, 288, 310, 350
Lsp1109I	GCAGC	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	125, 390
MboI	GATC	2 cut(s)	123, 388
MboII	GAAGA	2 cut(s)	173, 250
MflI	RGATCY	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	134, 338
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	97
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	123, 388
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	109
PctI	GAATGC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	13, 363
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	185
SatI	GCNGC	2 cut(s)	12, 362
Sau3AI	GATC	2 cut(s)	123, 388
Sau96I	GGNCC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	270
Sse9I	AATT	2 cut(s)	134, 338
SsiI	CCGC	2 cut(s)	11, 82
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	239
TasI	AATT	2 cut(s)	134, 338
TauI	GCSGC	1 cut(s)	14
TscAI	CASTG	2 cut(s)	175, 376
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	76, 174, 204, 250
TspRI	CASTG	2 cut(s)	175, 376
VpaK11BI	GGWCC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.