FvH4_3g36080

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012343
Physical Location & Seq
Reverse (-)
30940292 .. 30942405
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36080.t1

Sequence Viewer

Length: 441 bp
ATGCCTAGCTCCAGGTTTTCTGGGTCAGTTACAGGGCCGAAGGTTGATGTGGCCATTGACATGGGTCACCCGTTGCTCAATATCACCGTTGATGGTTTCTTGAAGATTGGAACTGTTGCTGCTACCAGAGCTGCTGCTGAGGATGCTTACTATGCCGTCAAGAAAGGGAGCATTTCAAGCCACAGCTTTGAGCAGACTTTGAAGAAGATGTGTAAAGAAGGCGCATATTGGGGAACTGTAGCTGGAGTTTATGTGGGAGCAGAGTATGGTGTGGAGAGGATCCGTGGCAGAAGAGACTGGAAGAATGCCATGATTGGGGGTGCAGTGACGGGAGCTGTAATTTCTGCAGCCACCAGCAATAACAAGGACAGGATTCTGGTTGATGCAATCACAGGAGGTGCCATTGCAACTGCTGCAGAAATCCTCAACTATCTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

147

Amino Acids

15.3

Weight (kDa)

9.04

Isoelectric Point (pI)

22.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 43 - 135 4.1e-12 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28900
fragaria_vesca FvH4_3g36080
malus_domestica MD03G1093500.v1.1 MD11G1108300.v1.1 MD11G1108500.v1.1 MD11G1108700.v1.1
prunus_persica Prupe.6G077600_v2.0.a1
pyrus_communis pycom03g07510 pycom11g08950 pycom11g08990
rosa_chinensis RchiOBHm_Chr5g0064511
rosa_laevigata RLG00000035730
rosa_multiflora Rmu_sc0003352.1_g000002
rosa_roxburghii Rroxscaffold_1G00016510
rosa_rugosa Rorug05G0365700 Rorug05G0365800
rosa_samantha Rh5AG423700 Rh5DG452400
rosa_wichuraiana Rw5G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AclWI GGATC 2 cut(s) 274, 287
AcoI YGGCCR 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 3 cut(s) 103, 177, 202
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 5 cut(s) 9, 131, 186, 242, 335
AluI AGCT 5 cut(s) 9, 131, 186, 242, 335
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 2 cut(s) 274, 287
AoxI GGCC 2 cut(s) 35, 51
ApeKI GCWGC 5 cut(s) 119, 131, 134, 347, 413
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 3 cut(s) 59, 76, 427
BalI TGGCCA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 279
BanI GGYRCC 1 cut(s) 398
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 5 cut(s) 106, 118, 121, 359, 400
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 3 cut(s) 237, 345, 414
BisI GCNGC 5 cut(s) 120, 132, 135, 348, 414
BlsI GCNGC 5 cut(s) 121, 133, 136, 349, 415
Bme1390I CCNGG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 281, 400
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 2 cut(s) 133, 373
BoxI GACNNNNGTC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 302
BseXI GCAGC 5 cut(s) 106, 118, 121, 359, 400
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 2 cut(s) 37, 53
BshNI GGYRCC 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 37, 53
Bsp143I GATC 1 cut(s) 279
BspANI GGCC 2 cut(s) 37, 53
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 281, 400
BspMAI CTGCAG 2 cut(s) 349, 418
BspPI GGATC 2 cut(s) 274, 287
BspT107I GGYRCC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 3 cut(s) 88, 115, 238
Bst6I CTCTTC 1 cut(s) 286
BstAPI GCANNNNNTGC 1 cut(s) 413
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 283
BstEII GGTNACC 1 cut(s) 65
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 5 cut(s) 128, 143, 152, 177, 413
BstNI CCWGG 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 63
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 3 cut(s) 237, 345, 414
BstV1I GCAGC 5 cut(s) 106, 118, 121, 359, 400
BstX2I RGATCY 1 cut(s) 279
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 279
BsuRI GGCC 2 cut(s) 37, 53
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 2 cut(s) 61, 310
CviJI RGCY 9 cut(s) 9, 37, 53, 131, 180, 186, 242, 335, 350
CviKI_1 RGCY 9 cut(s) 9, 37, 53, 131, 180, 186, 242, 335, 350
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 65
EcoO65I GGTNACC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 11
FaeI CATG 2 cut(s) 64, 313
FaiI YATR 6 cut(s) 62, 153, 226, 252, 267, 311
FatI CATG 2 cut(s) 60, 309
Fnu4HI GCNGC 5 cut(s) 120, 132, 135, 348, 414
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 5 cut(s) 120, 132, 135, 348, 414
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 223
GluI GCNGC 5 cut(s) 120, 132, 135, 348, 414
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 37, 53
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 64, 313
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 1 cut(s) 373
HphI GGTGA 3 cut(s) 59, 76, 427
Hpy188III TCNNGA 2 cut(s) 100, 160
HpyAV CCTTC 2 cut(s) 34, 212
HpyCH4III ACNGT 3 cut(s) 88, 115, 238
HpyCH4V TGCA 5 cut(s) 323, 347, 386, 407, 416
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 143, 152, 177, 413
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 2 cut(s) 64, 313
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 4 cut(s) 14, 168, 257, 332
Lsp1109I GCAGC 5 cut(s) 106, 118, 121, 359, 400
LweI GCATC 2 cut(s) 133, 373
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 3 cut(s) 28, 65, 325
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 5 cut(s) 115, 214, 217, 303, 313
MflI RGATCY 1 cut(s) 279
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 1 cut(s) 339
MluNI TGGCCA 1 cut(s) 53
MnlI CCTC 4 cut(s) 133, 270, 389, 434
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 5 cut(s) 128, 143, 152, 177, 413
NdeII GATC 1 cut(s) 279
NlaIII CATG 2 cut(s) 64, 313
NlaIV GGNNCC 2 cut(s) 281, 400
NmuCI GTSAC 2 cut(s) 65, 325
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 5 cut(s) 121, 133, 136, 349, 415
PshAI GACNNNNGTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 11
PspEI GGTNACC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 281, 400
PspPI GGNCC 1 cut(s) 35
PstI CTGCAG 2 cut(s) 349, 418
PsuI RGATCY 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 59
SatI GCNGC 5 cut(s) 120, 132, 135, 348, 414
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 13
SetI ASST 9 cut(s) 11, 17, 45, 133, 188, 244, 337, 400, 440
SfaNI GCATC 2 cut(s) 133, 373
SfcI CTRYAG 3 cut(s) 237, 345, 414
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 1 cut(s) 339
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 11
TaaI ACNGT 3 cut(s) 88, 115, 238
TasI AATT 1 cut(s) 339
TfiI GAWTC 1 cut(s) 373
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 2 cut(s) 65, 325
TseI GCWGC 5 cut(s) 119, 131, 134, 347, 413
Tsp45I GTSAC 2 cut(s) 65, 325
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 330
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.