Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003352.1

Orthogroup ID

OG0012343

Physical Location & Seq

Genomic Coordinates Reverse (-)

2262 .. 4042

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003352.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgcctagcagcgggttttcagggacactttccgggccgaaggttgaggtggccattgacatgggtaacccactgctcaatgtcaccgtcgatggtttcttgaagatcggagctgttgctgctaccagagttgctgcagaggaagcttaccatgccgtcaagaaagggagcatttcaagtcacaactttgagcacactttgaagaagatgtgtaaagaaggtgcatattggggaactgtagctggagtttatgtgggagcggagtatggtgtcgagaggatccgtggcagaagagactggaagaatgccatgattgggggtgtagtgacaggggctgtaatatctgcagccaccagcaaggacaaggacaggattgtggtcgatgcgatcacaggaggtgccattgcaactgctgcagaattcctcaactatctcatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

146

Amino Acids

15.29

Weight (kDa)

8.69

Isoelectric Point (pI)

9.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28900
fragaria_vesca	FvH4_3g36080
malus_domestica	MD03G1093500.v1.1 MD11G1108300.v1.1 MD11G1108500.v1.1 MD11G1108700.v1.1
prunus_persica	Prupe.6G077600_v2.0.a1
pyrus_communis	pycom03g07510 pycom11g08950 pycom11g08990
rosa_chinensis	RchiOBHm_Chr5g0064511
rosa_laevigata	RLG00000035730
rosa_multiflora	Rmu_sc0003352.1_g000002
rosa_roxburghii	Rroxscaffold_1G00016510
rosa_rugosa	Rorug05G0365700 Rorug05G0365800
rosa_samantha	Rh5AG423700 Rh5DG452400
rosa_wichuraiana	Rw5G039830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	2 cut(s)	12, 260
AclWI	GGATC	2 cut(s)	274, 287
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	11, 315
AgsI	TTSAA	3 cut(s)	103, 177, 202
AluBI	AGCT	3 cut(s)	113, 146, 242
AluI	AGCT	3 cut(s)	113, 146, 242
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	274, 287
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	35, 51
ApeKI	GCWGC	5 cut(s)	9, 119, 134, 347, 413
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	5 cut(s)	21, 106, 121, 359, 400
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	4 cut(s)	135, 237, 345, 414
BisI	GCNGC	5 cut(s)	10, 120, 135, 348, 414
BlsI	GCNGC	5 cut(s)	11, 121, 136, 349, 415
Bme1390I	CCNGG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	281, 400
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 315
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	11, 315
BseMI	GCAATG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	302
BseXI	GCAGC	5 cut(s)	21, 106, 121, 359, 400
BshFI	GGCC	2 cut(s)	37, 53
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	11, 315
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	37, 53
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	105, 279, 387
BspACI	CCGC	2 cut(s)	12, 260
BspANI	GGCC	2 cut(s)	37, 53
BspLI	GGNNCC	2 cut(s)	281, 400
BspMAI	CTGCAG	3 cut(s)	139, 349, 418
BspPI	GGATC	2 cut(s)	274, 287
BspT107I	GGYRCC	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	3 cut(s)	105, 279, 387
Bst4CI	ACNGT	2 cut(s)	88, 238
Bst6I	CTCTTC	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	65
BstKTI	GATC	3 cut(s)	108, 282, 390
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	3 cut(s)	105, 279, 387
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 143, 152, 413
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	4 cut(s)	135, 237, 345, 414
BstV1I	GCAGC	5 cut(s)	21, 106, 121, 359, 400
BstX2I	RGATCY	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	37, 53
BtgI	CCRYGG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	71
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	3 cut(s)	61, 152, 310
CviJI	RGCY	7 cut(s)	37, 53, 113, 146, 242, 335, 350
CviKI_1	RGCY	7 cut(s)	37, 53, 113, 146, 242, 335, 350
DpnI	GATC	3 cut(s)	107, 281, 389
DpnII	GATC	3 cut(s)	105, 279, 387
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco91I	GGTNACC	1 cut(s)	65
EcoO65I	GGTNACC	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	419
FaeI	CATG	3 cut(s)	64, 155, 313
FaiI	YATR	6 cut(s)	62, 153, 226, 252, 267, 311
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	60, 151, 309
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	10, 120, 135, 348, 414
Fsp4HI	GCNGC	5 cut(s)	10, 120, 135, 348, 414
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	5 cut(s)	10, 120, 135, 348, 414
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	37, 53
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	3 cut(s)	64, 155, 313
HindIII	AAGCTT	1 cut(s)	144
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	110, 440
Hpy188III	TCNNGA	3 cut(s)	100, 160, 274
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	34, 212
HpyCH4III	ACNGT	2 cut(s)	88, 238
HpyCH4V	TGCA	5 cut(s)	137, 224, 347, 407, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 143, 152, 413
Hsp92II	CATG	3 cut(s)	64, 155, 313
Kzo9I	GATC	3 cut(s)	105, 279, 387
LmnI	GCTCC	3 cut(s)	110, 168, 257
LpnPI	CCDG	9 cut(s)	6, 46, 139, 228, 283, 315, 355, 367, 378
Lsp1109I	GCAGC	5 cut(s)	21, 106, 121, 359, 400
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	4 cut(s)	65, 82, 179, 325
MalI	GATC	3 cut(s)	107, 281, 389
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	3 cut(s)	105, 279, 387
MboII	GAAGA	5 cut(s)	115, 214, 217, 303, 313
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	419
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	5 cut(s)	40, 133, 270, 389, 434
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	310
MwoI	GCNNNNNNNGC	4 cut(s)	119, 143, 152, 413
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	3 cut(s)	105, 279, 387
NlaIII	CATG	3 cut(s)	64, 155, 313
NlaIV	GGNNCC	2 cut(s)	281, 400
NmuCI	GTSAC	3 cut(s)	82, 179, 325
PctI	GAATGC	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	11, 121, 136, 349, 415
PspEI	GGTNACC	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	281, 400
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	3 cut(s)	139, 349, 418
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	59
SatI	GCNGC	5 cut(s)	10, 120, 135, 348, 414
Sau3AI	GATC	3 cut(s)	105, 279, 387
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	7 cut(s)	45, 51, 115, 148, 223, 244, 400
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	4 cut(s)	135, 237, 345, 414
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	2 cut(s)	12, 260
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	88, 238
TaqI	TCGA	3 cut(s)	90, 273, 381
TasI	AATT	1 cut(s)	419
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	3 cut(s)	82, 179, 325
TseI	GCWGC	5 cut(s)	9, 119, 134, 347, 413
Tsp45I	GTSAC	3 cut(s)	82, 179, 325
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	78
XapI	RAATTY	1 cut(s)	419
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.