MD11G1108500.v1.1

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012343
Physical Location & Seq
Forward (+)
9556678 .. 9558589
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1108500.v1.1.491

Sequence Viewer

Length: 582 bp
ATGGCATCTTCCGATGGCATTCTCGTAAATGTCTCATCACTGATAAATATCGTAGTACAAAACACCCCCACCAATTTTGTCATCAGTGTTAGTCACAGAGAGAGAGAGAGAGAGAGAGTGAGGAGAGAGAGAAAGAAGAAGAAGATGCCGAGAAGCAGTTTCTCAGGGGCGCTTACAGGGCCGCAAGTCGACGTGGTCATCGACTTGGGAAACCCCTTGCTCAACCACACCGTCGATGGCTTCTTGAAGATCGGAACCGTTGCTGCTACCAGAGCTGTTGCAGAGGATGCTTTCTCTGCGGCCAAGAATGGGAGCATTTCGACTAGCGACTTTAAGCACACTTTGAAGAAGATGTGTAAAGAAGGTGCATATTGGGGAACTGTAGCTGGAGTGTATGTGGGAGCAGAGTATGGTATCGAGAGGGTCCGTGGACACAGAGACTGGAATGCCATGCTCGGGGGTGCATTGACAGGGGCTCTAGTATCTGCAGCCAGCAAAGAGAACAAGGATAAAATTCTGGTGGATGCAATTACAGGAGGTGCCATTGCGACCGCTGCGGAATTCATCAACTATCTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

194

Amino Acids

20.68

Weight (kDa)

9.52

Isoelectric Point (pI)

16.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 84 - 182 4.2e-12 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28900
fragaria_vesca FvH4_3g36080
malus_domestica MD03G1093500.v1.1 MD11G1108300.v1.1 MD11G1108500.v1.1 MD11G1108700.v1.1
prunus_persica Prupe.6G077600_v2.0.a1
pyrus_communis pycom03g07510 pycom11g08950 pycom11g08990
rosa_chinensis RchiOBHm_Chr5g0064511
rosa_laevigata RLG00000035730
rosa_multiflora Rmu_sc0003352.1_g000002
rosa_roxburghii Rroxscaffold_1G00016510
rosa_rugosa Rorug05G0365700 Rorug05G0365800
rosa_samantha Rh5AG423700 Rh5DG452400
rosa_wichuraiana Rw5G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 539
AccI GTMKAC 1 cut(s) 189
AciI CCGC 4 cut(s) 182, 299, 552, 557
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 513, 560
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 309, 456
AgsI TTSAA 2 cut(s) 247, 346
AjiI CACGTC 1 cut(s) 193
AluBI AGCT 2 cut(s) 275, 386
AluI AGCT 2 cut(s) 275, 386
Alw26I GTCTC 2 cut(s) 37, 432
AlwNI CAGNNNCTG 1 cut(s) 441
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 2 cut(s) 179, 300
ApeKI GCWGC 3 cut(s) 263, 488, 554
ApoI RAATTY 2 cut(s) 513, 560
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 179, 424
AsuHPI GGTGA 1 cut(s) 568
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 424
BanI GGYRCC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 478
BbvI GCAGC 3 cut(s) 250, 500, 541
BccI CCATC 2 cut(s) 8, 230
BcoDI GTCTC 2 cut(s) 37, 432
BfaI CTAG 2 cut(s) 324, 479
BfmI CTRYAG 2 cut(s) 381, 486
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 5 cut(s) 182, 264, 300, 489, 555
BlsI GCNGC 5 cut(s) 183, 265, 301, 490, 556
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 179, 424
BmiI GGNNCC 3 cut(s) 256, 425, 541
BmsI GCATC 4 cut(s) 14, 135, 277, 514
BpmI CTGGAG 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 456
Bse1I ACTGG 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 2 cut(s) 292, 529
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 309, 456
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 3 cut(s) 250, 500, 541
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 2 cut(s) 181, 302
BshNI GGYRCC 1 cut(s) 539
BsiEI CGRYCG 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 455
BslI CCNNNNNNNGG 2 cut(s) 309, 456
BsmAI GTCTC 2 cut(s) 37, 432
BsmI GAATGC 2 cut(s) 18, 451
BsnI GGCC 2 cut(s) 181, 302
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 4 cut(s) 182, 299, 552, 557
BspANI GGCC 2 cut(s) 181, 302
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 3 cut(s) 256, 425, 541
BspMAI CTGCAG 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 543
BsrI ACTGG 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 232, 259, 382
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 292, 529
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 2 cut(s) 37, 432
BstMBI GATC 1 cut(s) 249
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 5 cut(s) 178, 272, 287, 296, 554
BstSFI CTRYAG 2 cut(s) 381, 486
BstV1I GCAGC 3 cut(s) 250, 500, 541
BsuRI GGCC 2 cut(s) 181, 302
BtgI CCRYGG 1 cut(s) 427
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 2 cut(s) 292, 529
BtsIMutI CAGTG 2 cut(s) 38, 91
Cac8I GCNNGC 1 cut(s) 493
CaiI CAGNNNCTG 1 cut(s) 441
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 179, 424
Csp6I GTAC 1 cut(s) 56
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 451
CviJI RGCY 7 cut(s) 181, 240, 275, 302, 386, 476, 491
CviKI_1 RGCY 7 cut(s) 181, 240, 275, 302, 386, 476, 491
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 424
Eco88I CYCGRG 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 478
FaeI CATG 1 cut(s) 454
FaiI YATR 4 cut(s) 370, 396, 411, 452
FatI CATG 1 cut(s) 450
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 182, 264, 300, 489, 555
FokI GGATG 2 cut(s) 299, 536
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 5 cut(s) 182, 264, 300, 489, 555
FspBI CTAG 2 cut(s) 324, 479
GlaI GCGC 1 cut(s) 171
GluI GCNGC 5 cut(s) 182, 264, 300, 489, 555
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 2 cut(s) 181, 302
HhaI GCGC 1 cut(s) 172
Hin1II CATG 1 cut(s) 454
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 2 cut(s) 190, 431
Hpy188I TCNGA 2 cut(s) 13, 254
Hpy188III TCNNGA 2 cut(s) 244, 418
Hpy8I GTNNAC 2 cut(s) 190, 431
Hpy99I CGWCG 2 cut(s) 194, 236
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 3 cut(s) 232, 259, 382
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 5 cut(s) 281, 368, 464, 488, 527
HpyF10VI GCNNNNNNNGC 5 cut(s) 178, 272, 287, 296, 554
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 1 cut(s) 454
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 312, 401
LpnPI CCDG 9 cut(s) 150, 162, 283, 372, 427, 456, 503, 505, 519
Lsp1109I GCAGC 3 cut(s) 250, 500, 541
LweI GCATC 4 cut(s) 14, 135, 277, 514
MaeI CTAG 2 cut(s) 324, 479
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 6 cut(s) 148, 151, 154, 259, 358, 361
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 4 cut(s) 73, 513, 528, 560
MnlI CCTC 4 cut(s) 114, 277, 414, 530
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 554
Mva1269I GAATGC 2 cut(s) 18, 451
MwoI GCNNNNNNNGC 5 cut(s) 178, 272, 287, 296, 554
NdeII GATC 1 cut(s) 249
NlaIII CATG 1 cut(s) 454
NlaIV GGNNCC 3 cut(s) 256, 425, 541
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 2 cut(s) 18, 451
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 5 cut(s) 183, 265, 301, 490, 556
PspN4I GGNNCC 3 cut(s) 256, 425, 541
PspPI GGNCC 2 cut(s) 179, 424
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 1 cut(s) 441
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 5 cut(s) 182, 264, 300, 489, 555
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 179, 424
SduI GDGCHC 1 cut(s) 478
SetI ASST 6 cut(s) 195, 277, 367, 388, 541, 581
SfaNI GCATC 4 cut(s) 14, 135, 277, 514
SfcI CTRYAG 2 cut(s) 381, 486
SinI GGWCC 1 cut(s) 424
Sse9I AATT 4 cut(s) 73, 513, 528, 560
SsiI CCGC 4 cut(s) 182, 299, 552, 557
SspMI CTAG 2 cut(s) 324, 479
TaaI ACNGT 3 cut(s) 232, 259, 382
TaiI ACGT 1 cut(s) 195
TaqI TCGA 5 cut(s) 189, 201, 234, 320, 417
TasI AATT 4 cut(s) 73, 513, 528, 560
TatI WGTACW 1 cut(s) 55
TauI GCSGC 2 cut(s) 184, 302
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 45, 91
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 3 cut(s) 263, 488, 554
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 553
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 2 cut(s) 45, 91
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 2 cut(s) 513, 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 2 cut(s) 324, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.