Rw5G039830

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0012343
Physical Location & Seq
Reverse (-)
70387168 .. 70388918
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039830.1

Sequence Viewer

Length: 438 bp
ATGCCTAGCAGCGGGTTTTCAGGGACACTTTCCGGGCCGAAGGTTGAGGTGGCCATTGACATGGGTAACCCACTGCTCAATGTCACCGTCGATGGTTTCTTGAAGATCGGAGTTGCTGCTACCAGAGTTGCTGCAGAGGAAGCTTACCATGCCGTCAAGAAAGGGAGCATTTCAAGTCACAACTTTGAGCACACTTTGAAGAAGATGTGTAAAGAAGGTGCATATTGGGGAACTGTAGCTGGAGTTTATGTGGGAGCGGAGTATGGTGTCGAGAGGATCCGTGGCAGAAGAGACTGGAAGAATGCCATGATTGGGGGTGTAGTGACAGGGGCTGTAATATCTGCAGCCACCAGCAAGGACAAGGACAGGATTGTGGTCGATGCGATCACAGGAGGTGCCATTGCAACTGCTGCAGAATTCCTCAACTATCTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

145

Amino Acids

15.22

Weight (kDa)

8.69

Isoelectric Point (pI)

10.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 54 - 134 6.8e-12 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28900
fragaria_vesca FvH4_3g36080
malus_domestica MD03G1093500.v1.1 MD11G1108300.v1.1 MD11G1108500.v1.1 MD11G1108700.v1.1
prunus_persica Prupe.6G077600_v2.0.a1
pyrus_communis pycom03g07510 pycom11g08950 pycom11g08990
rosa_chinensis RchiOBHm_Chr5g0064511
rosa_laevigata RLG00000035730
rosa_multiflora Rmu_sc0003352.1_g000002
rosa_roxburghii Rroxscaffold_1G00016510
rosa_rugosa Rorug05G0365700 Rorug05G0365800
rosa_samantha Rh5AG423700 Rh5DG452400
rosa_wichuraiana Rw5G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 257
AciI CCGC 2 cut(s) 12, 257
AclWI GGATC 2 cut(s) 271, 284
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 416
AfiI CCNNNNNNNGG 2 cut(s) 11, 312
AgsI TTSAA 3 cut(s) 103, 174, 199
AluBI AGCT 2 cut(s) 143, 239
AluI AGCT 2 cut(s) 143, 239
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 2 cut(s) 271, 284
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 2 cut(s) 35, 51
ApeKI GCWGC 5 cut(s) 9, 116, 131, 344, 410
ApoI RAATTY 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 76
BalI TGGCCA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 276
BanI GGYRCC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 5 cut(s) 21, 103, 118, 356, 397
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 4 cut(s) 132, 234, 342, 411
BisI GCNGC 5 cut(s) 10, 117, 132, 345, 411
BlsI GCNGC 5 cut(s) 11, 118, 133, 346, 412
Bme1390I CCNGG 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 278, 397
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 370
BpmI CTGGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 312
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 11, 312
BseMI GCAATG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 5 cut(s) 21, 103, 118, 356, 397
BshFI GGCC 2 cut(s) 37, 53
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 11, 312
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 2 cut(s) 37, 53
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 105, 276, 384
BspACI CCGC 2 cut(s) 12, 257
BspANI GGCC 2 cut(s) 37, 53
BspLI GGNNCC 2 cut(s) 278, 397
BspMAI CTGCAG 3 cut(s) 136, 346, 415
BspPI GGATC 2 cut(s) 271, 284
BspT107I GGYRCC 1 cut(s) 395
BsrBI CCGCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 399
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 3 cut(s) 105, 276, 384
Bst4CI ACNGT 2 cut(s) 88, 235
Bst6I CTCTTC 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 410
BstDSI CCRYGG 1 cut(s) 280
BstEII GGTNACC 1 cut(s) 65
BstKTI GATC 3 cut(s) 108, 279, 387
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 3 cut(s) 105, 276, 384
BstMWI GCNNNNNNNGC 3 cut(s) 140, 149, 410
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 4 cut(s) 132, 234, 342, 411
BstV1I GCAGC 5 cut(s) 21, 103, 118, 356, 397
BstX2I RGATCY 1 cut(s) 276
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 276
BsuRI GGCC 2 cut(s) 37, 53
BtgI CCRYGG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 3 cut(s) 61, 149, 307
CviJI RGCY 6 cut(s) 37, 53, 143, 239, 332, 347
CviKI_1 RGCY 6 cut(s) 37, 53, 143, 239, 332, 347
DpnI GATC 3 cut(s) 107, 278, 386
DpnII GATC 3 cut(s) 105, 276, 384
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco91I GGTNACC 1 cut(s) 65
EcoO65I GGTNACC 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 416
FaeI CATG 3 cut(s) 64, 152, 310
FaiI YATR 6 cut(s) 62, 150, 223, 249, 264, 308
FaqI GGGAC 1 cut(s) 37
FatI CATG 3 cut(s) 60, 148, 306
FauI CCCGC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 10, 117, 132, 345, 411
Fsp4HI GCNGC 5 cut(s) 10, 117, 132, 345, 411
FspBI CTAG 1 cut(s) 6
GluI GCNGC 5 cut(s) 10, 117, 132, 345, 411
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 2 cut(s) 37, 53
HapII CCGG 1 cut(s) 33
Hin1II CATG 3 cut(s) 64, 152, 310
HindIII AAGCTT 1 cut(s) 141
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 110, 437
Hpy188III TCNNGA 3 cut(s) 100, 157, 271
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 34, 209
HpyCH4III ACNGT 2 cut(s) 88, 235
HpyCH4V TGCA 5 cut(s) 134, 221, 344, 404, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 149, 410
Hsp92II CATG 3 cut(s) 64, 152, 310
Kzo9I GATC 3 cut(s) 105, 276, 384
LmnI GCTCC 2 cut(s) 165, 254
LpnPI CCDG 9 cut(s) 6, 46, 136, 225, 280, 312, 352, 364, 375
Lsp1109I GCAGC 5 cut(s) 21, 103, 118, 356, 397
LweI GCATC 1 cut(s) 370
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 4 cut(s) 65, 82, 176, 322
MalI GATC 3 cut(s) 107, 278, 386
MbiI CCGCTC 1 cut(s) 257
MboI GATC 3 cut(s) 105, 276, 384
MboII GAAGA 5 cut(s) 115, 211, 214, 300, 310
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 1 cut(s) 416
MluNI TGGCCA 1 cut(s) 53
MnlI CCTC 5 cut(s) 40, 130, 267, 386, 431
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 3 cut(s) 140, 149, 410
NciI CCSGG 1 cut(s) 34
NdeII GATC 3 cut(s) 105, 276, 384
NlaIII CATG 3 cut(s) 64, 152, 310
NlaIV GGNNCC 2 cut(s) 278, 397
NmuCI GTSAC 3 cut(s) 82, 176, 322
PctI GAATGC 1 cut(s) 307
PkrI GCNGC 5 cut(s) 11, 118, 133, 346, 412
PspEI GGTNACC 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 278, 397
PspPI GGNCC 1 cut(s) 35
PstI CTGCAG 3 cut(s) 136, 346, 415
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 59
SatI GCNGC 5 cut(s) 10, 117, 132, 345, 411
Sau3AI GATC 3 cut(s) 105, 276, 384
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 192
SetI ASST 6 cut(s) 45, 51, 145, 220, 241, 397
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 4 cut(s) 132, 234, 342, 411
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 1 cut(s) 416
SsiI CCGC 2 cut(s) 12, 257
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 88, 235
TaqI TCGA 3 cut(s) 90, 270, 378
TasI AATT 1 cut(s) 416
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 3 cut(s) 82, 176, 322
TseI GCWGC 5 cut(s) 9, 116, 131, 344, 410
Tsp45I GTSAC 3 cut(s) 82, 176, 322
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 1 cut(s) 78
XapI RAATTY 1 cut(s) 416
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.