MD11G1108300.v1.1

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012343
Physical Location & Seq
Forward (+)
9535212 .. 9537123
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1108300.v1.1.491

Sequence Viewer

Length: 438 bp
ATGCCGAGAAGCAGTTTCTCAGGGGCGCTTACAGGGCCGCAGGTCGACGTGATCATCGACTTGGGAAACCCCTTGCTCAACCACACCGTCGATGGCTTCTTGAAGATCGGAACAGTTGCTGCTACCAGAGCTGTTGCAGAGGATGCTTTCTCTGCGGCCAAGAAAGGGGGCATTTCGACTAAAGACTTTGAGCACACTTTGAAGAAGATGTGTAAAGAAGGTGCATATTGGGGAACTGTAGCTGGACTGTACGTGGGAGCAGAGTATGGTATCGAGAGGGTCCGTGGACGCAGAGACTGGAATGCATTGCTCGGGGGTGCATTGACAGGGGCTCTAGTATCTGCAGCCAGCAAAGAGAACAAAGATAAAGTTCTGGTGGATGCAATTACAGGAGGTGCCATTGCGACCGCTGCGGAATTCATCAACTACCTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

146

Amino Acids

15.16

Weight (kDa)

7.83

Isoelectric Point (pI)

12.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 37 - 135 5e-12 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28900
fragaria_vesca FvH4_3g36080
malus_domestica MD03G1093500.v1.1 MD11G1108300.v1.1 MD11G1108500.v1.1 MD11G1108700.v1.1
prunus_persica Prupe.6G077600_v2.0.a1
pyrus_communis pycom03g07510 pycom11g08950 pycom11g08990
rosa_chinensis RchiOBHm_Chr5g0064511
rosa_laevigata RLG00000035730
rosa_multiflora Rmu_sc0003352.1_g000002
rosa_roxburghii Rroxscaffold_1G00016510
rosa_rugosa Rorug05G0365700 Rorug05G0365800
rosa_samantha Rh5AG423700 Rh5DG452400
rosa_wichuraiana Rw5G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 45
AciI CCGC 4 cut(s) 38, 155, 408, 413
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 103, 202
AjiI CACGTC 1 cut(s) 49
AluBI AGCT 2 cut(s) 131, 242
AluI AGCT 2 cut(s) 131, 242
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 288
AlwNI CAGNNNCTG 2 cut(s) 119, 297
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 2 cut(s) 35, 156
ApeKI GCWGC 3 cut(s) 119, 344, 410
ApoI RAATTY 1 cut(s) 416
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 35, 280
AsuHPI GGTGA 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 106, 356, 397
BccI CCATC 1 cut(s) 86
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 2 cut(s) 237, 342
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 5 cut(s) 38, 120, 156, 345, 411
BlsI GCNGC 5 cut(s) 39, 121, 157, 346, 412
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 35, 280
BmiI GGNNCC 2 cut(s) 281, 397
BmsI GCATC 2 cut(s) 133, 370
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 2 cut(s) 305, 399
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 2 cut(s) 148, 385
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 2 cut(s) 305, 399
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 302
BseXI GCAGC 3 cut(s) 106, 356, 397
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 2 cut(s) 37, 158
BshNI GGYRCC 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 2 cut(s) 37, 158
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 195, 334
Bsp143I GATC 2 cut(s) 51, 105
BspACI CCGC 4 cut(s) 38, 155, 408, 413
BspANI GGCC 2 cut(s) 37, 158
BspCNI CTCAG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 281, 397
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 305, 399
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 51, 105
Bst4CI ACNGT 4 cut(s) 88, 115, 238, 249
BstAPI GCANNNNNTGC 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 2 cut(s) 148, 385
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 54, 108
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 2 cut(s) 51, 105
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 5 cut(s) 34, 128, 143, 152, 410
BstSFI CTRYAG 2 cut(s) 237, 342
BstV1I GCAGC 3 cut(s) 106, 356, 397
BsuRI GGCC 2 cut(s) 37, 158
BtgI CCRYGG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 148, 385
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 349
CaiI CAGNNNCTG 2 cut(s) 119, 297
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 35, 280
CseI GACGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 7 cut(s) 37, 96, 131, 158, 242, 332, 347
CviKI_1 RGCY 7 cut(s) 37, 96, 131, 158, 242, 332, 347
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 19
DpnI GATC 2 cut(s) 53, 107
DpnII GATC 2 cut(s) 51, 105
EaeI YGGCCR 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 416
EcoT22I ATGCAT 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 334
FaiI YATR 2 cut(s) 226, 267
FbaI TGATCA 1 cut(s) 51
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 5 cut(s) 38, 120, 156, 345, 411
FokI GGATG 2 cut(s) 155, 392
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 5 cut(s) 38, 120, 156, 345, 411
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 27
GluI GCNGC 5 cut(s) 38, 120, 156, 345, 411
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 2 cut(s) 37, 158
HgaI GACGC 1 cut(s) 297
HhaI GCGC 1 cut(s) 28
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 46, 287
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 100, 274
Hpy8I GTNNAC 2 cut(s) 46, 287
Hpy99I CGWCG 2 cut(s) 50, 92
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 4 cut(s) 88, 115, 238, 249
HpyCH4IV ACGT 2 cut(s) 48, 252
HpyCH4V TGCA 6 cut(s) 137, 224, 305, 320, 344, 383
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 128, 143, 152, 410
HpyF3I CTNAG 1 cut(s) 19
HpySE526I ACGT 2 cut(s) 48, 252
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 2 cut(s) 51, 105
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 3 cut(s) 106, 356, 397
LweI GCATC 2 cut(s) 133, 370
MaeI CTAG 1 cut(s) 335
MaeII ACGT 2 cut(s) 48, 252
MalI GATC 2 cut(s) 53, 107
MboI GATC 2 cut(s) 51, 105
MboII GAAGA 3 cut(s) 115, 214, 217
MhlI GDGCHC 2 cut(s) 195, 334
MluCI AATT 2 cut(s) 384, 416
MnlI CCTC 3 cut(s) 133, 270, 386
Mph1103I ATGCAT 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 5 cut(s) 34, 128, 143, 152, 410
NdeII GATC 2 cut(s) 51, 105
NlaIV GGNNCC 2 cut(s) 281, 397
NmeAIII GCCGAG 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 307
PkrI GCNGC 5 cut(s) 39, 121, 157, 346, 412
Ppu21I YACGTR 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 281, 397
PspPI GGNCC 2 cut(s) 35, 280
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 2 cut(s) 119, 297
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SalI GTCGAC 1 cut(s) 44
SatI GCNGC 5 cut(s) 38, 120, 156, 345, 411
Sau3AI GATC 2 cut(s) 51, 105
Sau96I GGNCC 2 cut(s) 35, 280
SduI GDGCHC 2 cut(s) 195, 334
SetI ASST 9 cut(s) 45, 51, 133, 223, 244, 255, 397, 432, 437
SfaNI GCATC 2 cut(s) 133, 370
SfcI CTRYAG 2 cut(s) 237, 342
SinI GGWCC 1 cut(s) 280
Sse9I AATT 2 cut(s) 384, 416
SsiI CCGC 4 cut(s) 38, 155, 408, 413
SspMI CTAG 1 cut(s) 335
TaaI ACNGT 4 cut(s) 88, 115, 238, 249
TaiI ACGT 2 cut(s) 51, 255
TaqI TCGA 5 cut(s) 45, 57, 90, 176, 273
TasI AATT 2 cut(s) 384, 416
TauI GCSGC 2 cut(s) 40, 158
TseI GCWGC 3 cut(s) 119, 344, 410
TspDTI ATGAA 1 cut(s) 409
TspGWI ACGGA 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.