zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G58620 |
| fragaria_vesca | FvH4_3g38750 FvH4_3g38750 FvH4_3g38750 |
| malus_domestica | MD03G1068400.v1.1 MD11G1072800.v1.1 |
| prunus_persica | Prupe.6G056300_v2.0.a1 |
| pyrus_communis | pycom03g05490 pycom11g06050 |
| rosa_chinensis | RchiOBHm_Chr5g0069901 |
| rosa_laevigata | RLG00000036106 |
| rosa_multiflora | Rmu_ssc0000133.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00011160 |
| rosa_rugosa | Rorug05G0400600 |
| rosa_samantha | Rh5AG457700 Rh5BG476500 Rh5CG500300 Rh5DG488400 |
| rosa_wichuraiana | Rw5G042740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 424, 1001 |
| Acc36I | ACCTGC | 3 cut(s) | 424, 1001, 1179 |
| AccI | GTMKAC | 2 cut(s) | 662, 1199 |
| AciI | CCGC | 8 cut(s) | 59, 62, 185, 270, 362, 748, 1651, 1710 |
| AclWI | GGATC | 8 cut(s) | 12, 160, 749, 1039, 1230, 1418, 1423, 1431 |
| AcsI | RAATTY | 2 cut(s) | 633, 650 |
| AcuI | CTGAAG | 2 cut(s) | 221, 1314 |
| AfaI | GTAC | 2 cut(s) | 878, 2018 |
| AfeI | AGCGCT | 1 cut(s) | 1271 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 400, 1127, 1246, 1571, 1586, 1719, 1900 |
| AflIII | ACRYGT | 2 cut(s) | 242, 1134 |
| AgeI | ACCGGT | 1 cut(s) | 1106 |
| AgsI | TTSAA | 8 cut(s) | 436, 670, 854, 972, 1086, 1195, 1369, 1943 |
| AjiI | CACGTC | 1 cut(s) | 243 |
| AjnI | CCWGG | 8 cut(s) | 730, 1180, 1245, 1398, 1625, 1785, 1924, 1968 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 437, 469, 1096, 1128, 1395, 1427 |
| Alw26I | GTCTC | 3 cut(s) | 896, 1728, 1915 |
| AlwI | GGATC | 8 cut(s) | 12, 160, 749, 1039, 1230, 1418, 1423, 1431 |
| Aor51HI | AGCGCT | 1 cut(s) | 1271 |
| AoxI | GGCC | 2 cut(s) | 282, 1388 |
| ApoI | RAATTY | 2 cut(s) | 633, 650 |
| AsiGI | ACCGGT | 1 cut(s) | 1106 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 951 |
| AspLEI | GCGC | 3 cut(s) | 1272, 1509, 1674 |
| AspS9I | GGNCC | 2 cut(s) | 282, 1928 |
| AsuC2I | CCSGG | 1 cut(s) | 1348 |
| AsuHPI | GGTGA | 6 cut(s) | 545, 719, 857, 1247, 1698, 1958 |
| AvaII | GGWCC | 1 cut(s) | 1928 |
| BaeGI | GKGCMC | 1 cut(s) | 719 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1765, 1798 |
| BamHI | GGATCC | 1 cut(s) | 1423 |
| BanII | GRGCYC | 1 cut(s) | 1757 |
| BauI | CACGAG | 1 cut(s) | 561 |
| BbvCI | CCTCAGC | 1 cut(s) | 330 |
| BccI | CCATC | 7 cut(s) | 71, 98, 157, 508, 569, 1069, 2029 |
| BciT130I | CCWGG | 8 cut(s) | 732, 1182, 1247, 1400, 1627, 1787, 1926, 1970 |
| BciVI | GTATCC | 5 cut(s) | 487, 1456, 1508, 1793, 1823 |
| BcnI | CCSGG | 1 cut(s) | 1348 |
| BcoDI | GTCTC | 3 cut(s) | 896, 1728, 1915 |
| BfaI | CTAG | 6 cut(s) | 519, 687, 1212, 1226, 1323, 1392 |
| BfmI | CTRYAG | 2 cut(s) | 1008, 1611 |
| BfoI | RGCGCY | 1 cut(s) | 1273 |
| BfuAI | ACCTGC | 3 cut(s) | 424, 1001, 1179 |
| BfuI | GTATCC | 5 cut(s) | 487, 1456, 1508, 1793, 1823 |
| Bme1390I | CCNGG | 9 cut(s) | 732, 1182, 1247, 1348, 1400, 1627, 1787, 1926, 1970 |
| Bme18I | GGWCC | 1 cut(s) | 1928 |
| BmgBI | CACGTC | 1 cut(s) | 243 |
| BmgT120I | GGNCC | 2 cut(s) | 282, 1928 |
| BmiI | GGNNCC | 2 cut(s) | 1425, 1655 |
| BmrFI | CCNGG | 9 cut(s) | 732, 1182, 1247, 1348, 1400, 1627, 1787, 1926, 1970 |
| BmrI | ACTGGG | 3 cut(s) | 868, 1471, 1786 |
| BmuI | ACTGGG | 3 cut(s) | 868, 1471, 1786 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1979, 2011 |
| BpmI | CTGGAG | 1 cut(s) | 71 |
| Bpu10I | CCTNAGC | 2 cut(s) | 330, 1241 |
| BpuEI | CTTGAG | 2 cut(s) | 424, 452 |
| BpuMI | CCSGG | 1 cut(s) | 1348 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1221 |
| BsaI | GGTCTC | 2 cut(s) | 1728, 1915 |
| BsaJI | CCNNGG | 4 cut(s) | 730, 758, 1180, 1786 |
| BsaWI | WCCGGW | 2 cut(s) | 479, 1106 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 400, 1127, 1246, 1571, 1586, 1719, 1900 |
| Bse118I | RCCGGY | 1 cut(s) | 1106 |
| Bse1I | ACTGG | 9 cut(s) | 313, 369, 874, 910, 1290, 1310, 1477, 1498, 1781 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1221 |
| BseBI | CCWGG | 8 cut(s) | 732, 1182, 1247, 1400, 1627, 1787, 1926, 1970 |
| BseDI | CCNNGG | 4 cut(s) | 730, 758, 1180, 1786 |
| BseJI | GATNNNNATC | 1 cut(s) | 1221 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 400, 1127, 1246, 1571, 1586, 1719, 1900 |
| BseMII | CTCAG | 4 cut(s) | 321, 498, 1454, 1557 |
| BseNI | ACTGG | 9 cut(s) | 313, 369, 874, 910, 1290, 1310, 1477, 1498, 1781 |
| BseRI | GAGGAG | 3 cut(s) | 188, 549, 1295 |
| BseSI | GKGCMC | 1 cut(s) | 719 |
| BseYI | CCCAGC | 1 cut(s) | 398 |
| BsgI | GTGCAG | 1 cut(s) | 1626 |
| BshFI | GGCC | 2 cut(s) | 284, 1390 |
| BshTI | ACCGGT | 1 cut(s) | 1106 |
| BsiSI | CCGG | 3 cut(s) | 480, 1107, 1347 |
| BslFI | GGGAC | 6 cut(s) | 416, 592, 820, 942, 971, 1278 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 400, 1127, 1246, 1571, 1586, 1719, 1900 |
| BsmAI | GTCTC | 3 cut(s) | 896, 1728, 1915 |
| BsmFI | GGGAC | 6 cut(s) | 416, 592, 820, 942, 971, 1278 |
| BsmI | GAATGC | 1 cut(s) | 860 |
| BsnI | GGCC | 2 cut(s) | 284, 1390 |
| Bso31I | GGTCTC | 2 cut(s) | 1728, 1915 |
| Bsp1286I | GDGCHC | 2 cut(s) | 719, 1757 |
| BspACI | CCGC | 8 cut(s) | 59, 62, 185, 270, 362, 748, 1651, 1710 |
| BspANI | GGCC | 2 cut(s) | 284, 1390 |
| BspCNI | CTCAG | 4 cut(s) | 322, 499, 1453, 1556 |
| BspHI | TCATGA | 2 cut(s) | 7, 109 |
| BspLI | GGNNCC | 2 cut(s) | 1425, 1655 |
| BspMAI | CTGCAG | 2 cut(s) | 1012, 1615 |
| BspMI | ACCTGC | 3 cut(s) | 424, 1001, 1179 |
| BspPI | GGATC | 8 cut(s) | 12, 160, 749, 1039, 1230, 1418, 1423, 1431 |
| BspQI | GCTCTTC | 3 cut(s) | 297, 942, 1938 |
| BspTNI | GGTCTC | 2 cut(s) | 1728, 1915 |
| BsrFI | RCCGGY | 1 cut(s) | 1106 |
| BsrI | ACTGG | 9 cut(s) | 313, 369, 874, 910, 1290, 1310, 1477, 1498, 1781 |
| BssAI | RCCGGY | 1 cut(s) | 1106 |
| BssECI | CCNNGG | 4 cut(s) | 730, 758, 1180, 1786 |
| BssNAI | GTATAC | 1 cut(s) | 663 |
| BssSI | CACGAG | 1 cut(s) | 561 |
| BssT1I | CCWWGG | 1 cut(s) | 758 |
| Bst1107I | GTATAC | 1 cut(s) | 663 |
| Bst2BI | CACGAG | 1 cut(s) | 561 |
| Bst2UI | CCWGG | 8 cut(s) | 732, 1182, 1247, 1400, 1627, 1787, 1926, 1970 |
| Bst4CI | ACNGT | 2 cut(s) | 1259, 1861 |
| Bst6I | CTCTTC | 5 cut(s) | 297, 618, 942, 1561, 1938 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1604 |
| BstC8I | GCNNGC | 5 cut(s) | 268, 351, 815, 860, 1265 |
| BstDEI | CTNAG | 6 cut(s) | 330, 507, 1205, 1241, 1440, 1543 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1898 |
| BstH2I | RGCGCY | 1 cut(s) | 1273 |
| BstHHI | GCGC | 3 cut(s) | 1272, 1509, 1674 |
| BstMAI | GTCTC | 3 cut(s) | 896, 1728, 1915 |
| BstNI | CCWGG | 8 cut(s) | 732, 1182, 1247, 1400, 1627, 1787, 1926, 1970 |
| BstNSI | RCATGY | 2 cut(s) | 1138, 1525 |
| BstSCI | CCNGG | 9 cut(s) | 730, 1180, 1245, 1346, 1398, 1625, 1785, 1924, 1968 |
| BstSFI | CTRYAG | 2 cut(s) | 1008, 1611 |
| BstSLI | GKGCMC | 1 cut(s) | 719 |
| BstX2I | RGATCY | 2 cut(s) | 1222, 1423 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1694 |
| BstYI | RGATCY | 2 cut(s) | 1222, 1423 |
| BstZ17I | GTATAC | 1 cut(s) | 663 |
| BsuI | GTATCC | 5 cut(s) | 487, 1456, 1508, 1793, 1823 |
| BsuRI | GGCC | 2 cut(s) | 284, 1390 |
| BtrI | CACGTC | 1 cut(s) | 243 |
| BtsI | GCAGTG | 3 cut(s) | 285, 1681, 1967 |
| BtsIMutI | CAGTG | 3 cut(s) | 285, 1681, 1967 |
| BveI | ACCTGC | 3 cut(s) | 424, 1001, 1179 |
| Cac8I | GCNNGC | 5 cut(s) | 268, 351, 815, 860, 1265 |
| CciI | TCATGA | 2 cut(s) | 7, 109 |
| CfoI | GCGC | 3 cut(s) | 1272, 1509, 1674 |
| Cfr10I | RCCGGY | 1 cut(s) | 1106 |
| Cfr13I | GGNCC | 2 cut(s) | 282, 1928 |
| Csp6I | GTAC | 2 cut(s) | 877, 2017 |
| CspAI | ACCGGT | 1 cut(s) | 1106 |
| CviQI | GTAC | 2 cut(s) | 877, 2017 |
| DdeI | CTNAG | 6 cut(s) | 330, 507, 1205, 1241, 1440, 1543 |
| Eam1104I | CTCTTC | 5 cut(s) | 297, 618, 942, 1561, 1938 |
| EarI | CTCTTC | 5 cut(s) | 297, 618, 942, 1561, 1938 |
| Eco130I | CCWWGG | 1 cut(s) | 758 |
| Eco147I | AGGCCT | 1 cut(s) | 1390 |
| Eco24I | GRGCYC | 1 cut(s) | 1757 |
| Eco31I | GGTCTC | 2 cut(s) | 1728, 1915 |
| Eco47I | GGWCC | 1 cut(s) | 1928 |
| Eco47III | AGCGCT | 1 cut(s) | 1271 |
| Eco57I | CTGAAG | 2 cut(s) | 221, 1314 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1898 |
| EcoRII | CCWGG | 8 cut(s) | 730, 1180, 1245, 1398, 1625, 1785, 1924, 1968 |
| EcoT14I | CCWWGG | 1 cut(s) | 758 |
| EcoT22I | ATGCAT | 1 cut(s) | 1600 |
| EcoT38I | GRGCYC | 1 cut(s) | 1757 |
| ErhI | CCWWGG | 1 cut(s) | 758 |
| FaqI | GGGAC | 6 cut(s) | 416, 592, 820, 942, 971, 1278 |
| FauI | CCCGC | 1 cut(s) | 1717 |
| FblI | GTMKAC | 2 cut(s) | 662, 1199 |
| FriOI | GRGCYC | 1 cut(s) | 1757 |
| FspBI | CTAG | 6 cut(s) | 519, 687, 1212, 1226, 1323, 1392 |
| GlaI | GCGC | 3 cut(s) | 1271, 1508, 1673 |
| GsaI | CCCAGC | 1 cut(s) | 402 |
| GsuI | CTGGAG | 1 cut(s) | 71 |
| HaeII | RGCGCY | 1 cut(s) | 1273 |
| HaeIII | GGCC | 2 cut(s) | 284, 1390 |
| HapII | CCGG | 3 cut(s) | 480, 1107, 1347 |
| HhaI | GCGC | 3 cut(s) | 1272, 1509, 1674 |
| Hin6I | GCGC | 3 cut(s) | 1270, 1507, 1672 |
| HinP1I | GCGC | 3 cut(s) | 1270, 1507, 1672 |
| HindIII | AAGCTT | 1 cut(s) | 450 |
| HinfI | GANTC | 5 cut(s) | 1039, 1072, 1099, 1351, 1715 |
| HpaII | CCGG | 3 cut(s) | 480, 1107, 1347 |
| HphI | GGTGA | 6 cut(s) | 545, 719, 857, 1247, 1698, 1958 |
| Hpy166II | GTNNAC | 5 cut(s) | 663, 727, 1043, 1200, 1888 |
| Hpy188I | TCNGA | 5 cut(s) | 86, 240, 277, 508, 800 |
| Hpy8I | GTNNAC | 5 cut(s) | 663, 727, 1043, 1200, 1888 |
| Hpy99I | CGWCG | 1 cut(s) | 1263 |
| HpyCH4III | ACNGT | 2 cut(s) | 1259, 1861 |
| HpyCH4IV | ACGT | 1 cut(s) | 242 |
| HpyF3I | CTNAG | 6 cut(s) | 330, 507, 1205, 1241, 1440, 1543 |
| HpySE526I | ACGT | 1 cut(s) | 242 |
| HspAI | GCGC | 3 cut(s) | 1270, 1507, 1672 |
| LguI | GCTCTTC | 3 cut(s) | 297, 942, 1938 |
| LmnI | GCTCC | 4 cut(s) | 1182, 1653, 2023, 2029 |
| MaeI | CTAG | 6 cut(s) | 519, 687, 1212, 1226, 1323, 1392 |
| MaeII | ACGT | 1 cut(s) | 242 |
| MaeIII | GTNAC | 3 cut(s) | 550, 1394, 1964 |
| MflI | RGATCY | 2 cut(s) | 1222, 1423 |
| MhlI | GDGCHC | 2 cut(s) | 719, 1757 |
| MluCI | AATT | 6 cut(s) | 226, 633, 650, 1364, 1690, 1747 |
| MlyI | GAGTC | 2 cut(s) | 1048, 1093 |
| MmeI | TCCRAC | 4 cut(s) | 130, 1127, 1326, 1880 |
| Mph1103I | ATGCAT | 1 cut(s) | 1600 |
| MroXI | GAANNNNTTC | 1 cut(s) | 951 |
| MseI | TTAA | 3 cut(s) | 224, 384, 2044 |
| MslI | CAYNNNNRTG | 2 cut(s) | 218, 1520 |
| MspA1I | CMGCKG | 4 cut(s) | 187, 1610, 1634, 1651 |
| MspI | CCGG | 3 cut(s) | 480, 1107, 1347 |
| MspR9I | CCNGG | 9 cut(s) | 732, 1182, 1247, 1348, 1400, 1627, 1787, 1926, 1970 |
| Mva1269I | GAATGC | 1 cut(s) | 860 |
| MvaI | CCWGG | 8 cut(s) | 732, 1182, 1247, 1400, 1627, 1787, 1926, 1970 |
| NciI | CCSGG | 1 cut(s) | 1348 |
| NlaIV | GGNNCC | 2 cut(s) | 1425, 1655 |
| NmuCI | GTSAC | 2 cut(s) | 550, 1964 |
| NsiI | ATGCAT | 1 cut(s) | 1600 |
| NspI | RCATGY | 2 cut(s) | 1138, 1525 |
| PagI | TCATGA | 2 cut(s) | 7, 109 |
| PaqCI | CACCTGC | 2 cut(s) | 424, 1001 |
| PceI | AGGCCT | 1 cut(s) | 1390 |
| PciI | ACATGT | 1 cut(s) | 1134 |
| PciSI | GCTCTTC | 3 cut(s) | 297, 942, 1938 |
| PctI | GAATGC | 1 cut(s) | 860 |
| PdmI | GAANNNNTTC | 1 cut(s) | 951 |
| PfeI | GAWTC | 3 cut(s) | 1072, 1351, 1715 |
| PfoI | TCCNGGA | 1 cut(s) | 1346 |
| PinAI | ACCGGT | 1 cut(s) | 1106 |
| PleI | GAGTC | 2 cut(s) | 1047, 1093 |
| PpsI | GAGTC | 2 cut(s) | 1047, 1093 |
| PscI | ACATGT | 1 cut(s) | 1134 |
| Psp6I | CCWGG | 8 cut(s) | 730, 1180, 1245, 1398, 1625, 1785, 1924, 1968 |
| PspFI | CCCAGC | 1 cut(s) | 398 |
| PspGI | CCWGG | 8 cut(s) | 730, 1180, 1245, 1398, 1625, 1785, 1924, 1968 |
| PspN4I | GGNNCC | 2 cut(s) | 1425, 1655 |
| PspPI | GGNCC | 2 cut(s) | 282, 1928 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 620, 652 |
| PstI | CTGCAG | 2 cut(s) | 1012, 1615 |
| PsuI | RGATCY | 2 cut(s) | 1222, 1423 |
| PvuII | CAGCTG | 2 cut(s) | 1610, 1634 |
| RsaI | GTAC | 2 cut(s) | 878, 2018 |
| RsaNI | GTAC | 2 cut(s) | 877, 2017 |
| RseI | CAYNNNNRTG | 2 cut(s) | 218, 1520 |
| SapI | GCTCTTC | 3 cut(s) | 297, 942, 1938 |
| SaqAI | TTAA | 3 cut(s) | 224, 384, 2044 |
| Sau96I | GGNCC | 2 cut(s) | 282, 1928 |
| SchI | GAGTC | 2 cut(s) | 1048, 1093 |
| ScrFI | CCNGG | 9 cut(s) | 732, 1182, 1247, 1348, 1400, 1627, 1787, 1926, 1970 |
| SduI | GDGCHC | 2 cut(s) | 719, 1757 |
| SfcI | CTRYAG | 2 cut(s) | 1008, 1611 |
| SinI | GGWCC | 1 cut(s) | 1928 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 218, 1520 |
| SmlI | CTYRAG | 2 cut(s) | 439, 467 |
| SmoI | CTYRAG | 2 cut(s) | 439, 467 |
| Sse9I | AATT | 6 cut(s) | 226, 633, 650, 1364, 1690, 1747 |
| SseBI | AGGCCT | 1 cut(s) | 1390 |
| SsiI | CCGC | 8 cut(s) | 59, 62, 185, 270, 362, 748, 1651, 1710 |
| SspI | AATATT | 1 cut(s) | 1156 |
| SspMI | CTAG | 6 cut(s) | 519, 687, 1212, 1226, 1323, 1392 |
| StuI | AGGCCT | 1 cut(s) | 1390 |
| StyD4I | CCNGG | 9 cut(s) | 730, 1180, 1245, 1346, 1398, 1625, 1785, 1924, 1968 |
| StyI | CCWWGG | 1 cut(s) | 758 |
| TaaI | ACNGT | 2 cut(s) | 1259, 1861 |
| TaiI | ACGT | 1 cut(s) | 245 |
| TaqI | TCGA | 6 cut(s) | 41, 155, 247, 1354, 1919, 2007 |
| TaqII | GACCGA | 1 cut(s) | 1521 |
| TasI | AATT | 6 cut(s) | 226, 633, 650, 1364, 1690, 1747 |
| TatI | WGTACW | 1 cut(s) | 2016 |
| TauI | GCSGC | 3 cut(s) | 62, 65, 751 |
| TfiI | GAWTC | 3 cut(s) | 1072, 1351, 1715 |
| Tru1I | TTAA | 3 cut(s) | 224, 384, 2044 |
| Tru9I | TTAA | 3 cut(s) | 224, 384, 2044 |
| TscAI | CASTG | 3 cut(s) | 292, 1681, 1967 |
| TseFI | GTSAC | 2 cut(s) | 550, 1964 |
| Tsp45I | GTSAC | 2 cut(s) | 550, 1964 |
| TspDTI | ATGAA | 7 cut(s) | 230, 284, 417, 663, 1532, 1548, 1654 |
| TspGWI | ACGGA | 2 cut(s) | 596, 645 |
| TspRI | CASTG | 3 cut(s) | 292, 1681, 1967 |
| VpaK11BI | GGWCC | 1 cut(s) | 1928 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1898 |
| XapI | RAATTY | 2 cut(s) | 633, 650 |
| XbaI | TCTAGA | 1 cut(s) | 1225 |
| XceI | RCATGY | 2 cut(s) | 1138, 1525 |
| XmiI | GTMKAC | 2 cut(s) | 662, 1199 |
| XmnI | GAANNNNTTC | 1 cut(s) | 951 |
| XspI | CTAG | 6 cut(s) | 519, 687, 1212, 1226, 1323, 1392 |
| Zsp2I | ATGCAT | 1 cut(s) | 1600 |