zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G58620 |
| fragaria_vesca | FvH4_3g38750 FvH4_3g38750 FvH4_3g38750 |
| malus_domestica | MD03G1068400.v1.1 MD11G1072800.v1.1 |
| prunus_persica | Prupe.6G056300_v2.0.a1 |
| pyrus_communis | pycom03g05490 pycom11g06050 |
| rosa_chinensis | RchiOBHm_Chr5g0069901 |
| rosa_laevigata | RLG00000036106 |
| rosa_multiflora | Rmu_ssc0000133.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00011160 |
| rosa_rugosa | Rorug05G0400600 |
| rosa_samantha | Rh5AG457700 Rh5BG476500 Rh5CG500300 Rh5DG488400 |
| rosa_wichuraiana | Rw5G042740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 469 |
| Acc36I | ACCTGC | 2 cut(s) | 469, 1224 |
| AccI | GTMKAC | 2 cut(s) | 707, 1244 |
| AclWI | GGATC | 5 cut(s) | 57, 794, 1084, 1463, 1468 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcuI | CTGAAG | 1 cut(s) | 1359 |
| AfaI | GTAC | 3 cut(s) | 771, 923, 2066 |
| AfeI | AGCGCT | 1 cut(s) | 1316 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 445, 1172, 1291, 1346, 1616, 1631, 1945, 2047 |
| AflIII | ACRYGT | 2 cut(s) | 287, 1179 |
| AgeI | ACCGGT | 1 cut(s) | 1151 |
| AjnI | CCWGG | 7 cut(s) | 775, 1225, 1290, 1670, 1830, 1954, 1969 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 482, 514, 1141, 1173, 1440, 1472 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 13, 45, 1881, 1913 |
| Alw26I | GTCTC | 3 cut(s) | 941, 1488, 1960 |
| AlwI | GGATC | 5 cut(s) | 57, 794, 1084, 1463, 1468 |
| Aor51HI | AGCGCT | 1 cut(s) | 1316 |
| AoxI | GGCC | 2 cut(s) | 108, 1433 |
| AsiGI | ACCGGT | 1 cut(s) | 1151 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 996 |
| AspLEI | GCGC | 4 cut(s) | 1207, 1317, 1554, 1719 |
| AspS9I | GGNCC | 3 cut(s) | 1434, 1958, 1973 |
| AsuHPI | GGTGA | 6 cut(s) | 181, 578, 590, 902, 1743, 2003 |
| AsuII | TTCGAA | 1 cut(s) | 14 |
| AvaII | GGWCC | 2 cut(s) | 1958, 1973 |
| BaeGI | GKGCMC | 1 cut(s) | 764 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1810, 1843 |
| BauI | CACGAG | 1 cut(s) | 606 |
| BbsI | GAAGAC | 1 cut(s) | 1101 |
| BbvCI | CCTCAGC | 2 cut(s) | 375, 1853 |
| BccI | CCATC | 6 cut(s) | 116, 143, 202, 553, 614, 2077 |
| BceAI | ACGGC | 1 cut(s) | 348 |
| BciT130I | CCWGG | 7 cut(s) | 777, 1227, 1292, 1672, 1832, 1956, 1971 |
| BciVI | GTATCC | 3 cut(s) | 1501, 1553, 1838 |
| BcoDI | GTCTC | 3 cut(s) | 941, 1488, 1960 |
| BfaI | CTAG | 4 cut(s) | 732, 1257, 1368, 1817 |
| BfmI | CTRYAG | 1 cut(s) | 369 |
| BfoI | RGCGCY | 1 cut(s) | 1318 |
| BfuAI | ACCTGC | 2 cut(s) | 469, 1224 |
| BfuI | GTATCC | 3 cut(s) | 1501, 1553, 1838 |
| Bme1390I | CCNGG | 7 cut(s) | 777, 1227, 1292, 1672, 1832, 1956, 1971 |
| Bme18I | GGWCC | 2 cut(s) | 1958, 1973 |
| BmgT120I | GGNCC | 3 cut(s) | 1434, 1958, 1973 |
| BmiI | GGNNCC | 2 cut(s) | 199, 1700 |
| BmrFI | CCNGG | 7 cut(s) | 777, 1227, 1292, 1672, 1832, 1956, 1971 |
| BmrI | ACTGGG | 3 cut(s) | 913, 1516, 1831 |
| BmsI | GCATC | 9 cut(s) | 400, 859, 944, 1441, 1526, 1539, 1630, 1652, 1939 |
| BmuI | ACTGGG | 3 cut(s) | 913, 1516, 1831 |
| BpiI | GAAGAC | 1 cut(s) | 1101 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| Bpu10I | CCTNAGC | 3 cut(s) | 375, 1286, 1853 |
| Bpu14I | TTCGAA | 1 cut(s) | 14 |
| BpuEI | CTTGAG | 1 cut(s) | 497 |
| BsaI | GGTCTC | 1 cut(s) | 1960 |
| BsaJI | CCNNGG | 7 cut(s) | 45, 330, 775, 776, 803, 1225, 1831 |
| BsaWI | WCCGGW | 1 cut(s) | 1151 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 445, 1172, 1291, 1346, 1616, 1631, 1945, 2047 |
| Bse118I | RCCGGY | 1 cut(s) | 1151 |
| Bse1I | ACTGG | 7 cut(s) | 414, 919, 955, 1335, 1522, 1543, 1826 |
| Bse3DI | GCAATG | 1 cut(s) | 1482 |
| BseBI | CCWGG | 7 cut(s) | 777, 1227, 1292, 1672, 1832, 1956, 1971 |
| BseDI | CCNNGG | 7 cut(s) | 45, 330, 775, 776, 803, 1225, 1831 |
| BseGI | GGATG | 9 cut(s) | 163, 415, 625, 874, 949, 959, 1343, 1517, 1954 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 445, 1172, 1291, 1346, 1616, 1631, 1945, 2047 |
| BseMI | GCAATG | 1 cut(s) | 1482 |
| BseMII | CTCAG | 5 cut(s) | 366, 543, 1499, 1602, 1844 |
| BseNI | ACTGG | 7 cut(s) | 414, 919, 955, 1335, 1522, 1543, 1826 |
| BseRI | GAGGAG | 3 cut(s) | 233, 594, 1440 |
| BseSI | GKGCMC | 1 cut(s) | 764 |
| BseX3I | CGGCCG | 1 cut(s) | 108 |
| BsgI | GTGCAG | 2 cut(s) | 25, 1671 |
| Bsh1285I | CGRYCG | 1 cut(s) | 111 |
| BshFI | GGCC | 2 cut(s) | 110, 1435 |
| BshTI | ACCGGT | 1 cut(s) | 1151 |
| BsiEI | CGRYCG | 1 cut(s) | 111 |
| BsiSI | CCGG | 2 cut(s) | 1152, 1347 |
| BslFI | GGGAC | 5 cut(s) | 461, 637, 865, 987, 1323 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 445, 1172, 1291, 1346, 1616, 1631, 1945, 2047 |
| BsmAI | GTCTC | 3 cut(s) | 941, 1488, 1960 |
| BsmFI | GGGAC | 5 cut(s) | 461, 637, 865, 987, 1323 |
| BsnI | GGCC | 2 cut(s) | 110, 1435 |
| Bso31I | GGTCTC | 1 cut(s) | 1960 |
| Bsp119I | TTCGAA | 1 cut(s) | 14 |
| Bsp1286I | GDGCHC | 1 cut(s) | 764 |
| Bsp1407I | TGTACA | 1 cut(s) | 769 |
| Bsp19I | CCATGG | 1 cut(s) | 45 |
| BspANI | GGCC | 2 cut(s) | 110, 1435 |
| BspCNI | CTCAG | 5 cut(s) | 367, 544, 1498, 1601, 1845 |
| BspHI | TCATGA | 1 cut(s) | 52 |
| BspLI | GGNNCC | 2 cut(s) | 199, 1700 |
| BspMAI | CTGCAG | 1 cut(s) | 373 |
| BspMI | ACCTGC | 2 cut(s) | 469, 1224 |
| BspPI | GGATC | 5 cut(s) | 57, 794, 1084, 1463, 1468 |
| BspQI | GCTCTTC | 2 cut(s) | 342, 987 |
| BspT104I | TTCGAA | 1 cut(s) | 14 |
| BspTNI | GGTCTC | 1 cut(s) | 1960 |
| BsrDI | GCAATG | 1 cut(s) | 1482 |
| BsrFI | RCCGGY | 1 cut(s) | 1151 |
| BsrGI | TGTACA | 1 cut(s) | 769 |
| BsrI | ACTGG | 7 cut(s) | 414, 919, 955, 1335, 1522, 1543, 1826 |
| BssAI | RCCGGY | 1 cut(s) | 1151 |
| BssECI | CCNNGG | 7 cut(s) | 45, 330, 775, 776, 803, 1225, 1831 |
| BssNAI | GTATAC | 1 cut(s) | 708 |
| BssSI | CACGAG | 1 cut(s) | 606 |
| BssT1I | CCWWGG | 2 cut(s) | 45, 803 |
| Bst1107I | GTATAC | 1 cut(s) | 708 |
| Bst2BI | CACGAG | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 7 cut(s) | 777, 1227, 1292, 1672, 1832, 1956, 1971 |
| Bst4CI | ACNGT | 4 cut(s) | 344, 470, 1906, 1962 |
| Bst6I | CTCTTC | 3 cut(s) | 11, 342, 987 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1649 |
| BstAUI | TGTACA | 1 cut(s) | 769 |
| BstBI | TTCGAA | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 4 cut(s) | 313, 396, 860, 1310 |
| BstDEI | CTNAG | 8 cut(s) | 375, 552, 1250, 1286, 1485, 1588, 1853, 2068 |
| BstDSI | CCRYGG | 2 cut(s) | 45, 330 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1943 |
| BstF5I | GGATG | 9 cut(s) | 163, 415, 625, 874, 949, 959, 1343, 1517, 1954 |
| BstH2I | RGCGCY | 1 cut(s) | 1318 |
| BstHHI | GCGC | 4 cut(s) | 1207, 1317, 1554, 1719 |
| BstMAI | GTCTC | 3 cut(s) | 941, 1488, 1960 |
| BstMCI | CGRYCG | 1 cut(s) | 111 |
| BstNI | CCWGG | 7 cut(s) | 777, 1227, 1292, 1672, 1832, 1956, 1971 |
| BstNSI | RCATGY | 2 cut(s) | 1183, 1570 |
| BstSCI | CCNGG | 7 cut(s) | 775, 1225, 1290, 1670, 1830, 1954, 1969 |
| BstSFI | CTRYAG | 1 cut(s) | 369 |
| BstSLI | GKGCMC | 1 cut(s) | 764 |
| BstV2I | GAAGAC | 1 cut(s) | 1101 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 208, 1739 |
| BstZ17I | GTATAC | 1 cut(s) | 708 |
| BstZI | CGGCCG | 1 cut(s) | 108 |
| BsuI | GTATCC | 3 cut(s) | 1501, 1553, 1838 |
| BsuRI | GGCC | 2 cut(s) | 110, 1435 |
| BtgI | CCRYGG | 2 cut(s) | 45, 330 |
| BtsCI | GGATG | 9 cut(s) | 163, 415, 625, 874, 949, 959, 1343, 1517, 1954 |
| BtsI | GCAGTG | 2 cut(s) | 1726, 2012 |
| BtsIMutI | CAGTG | 4 cut(s) | 33, 340, 1726, 2012 |
| BveI | ACCTGC | 2 cut(s) | 469, 1224 |
| Cac8I | GCNNGC | 4 cut(s) | 313, 396, 860, 1310 |
| CciI | TCATGA | 1 cut(s) | 52 |
| CfoI | GCGC | 4 cut(s) | 1207, 1317, 1554, 1719 |
| Cfr10I | RCCGGY | 1 cut(s) | 1151 |
| Cfr13I | GGNCC | 3 cut(s) | 1434, 1958, 1973 |
| Csp6I | GTAC | 3 cut(s) | 770, 922, 2065 |
| CspAI | ACCGGT | 1 cut(s) | 1151 |
| CviQI | GTAC | 3 cut(s) | 770, 922, 2065 |
| DdeI | CTNAG | 8 cut(s) | 375, 552, 1250, 1286, 1485, 1588, 1853, 2068 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| EagI | CGGCCG | 1 cut(s) | 108 |
| Eam1104I | CTCTTC | 3 cut(s) | 11, 342, 987 |
| EarI | CTCTTC | 3 cut(s) | 11, 342, 987 |
| EclXI | CGGCCG | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 2 cut(s) | 45, 803 |
| Eco31I | GGTCTC | 1 cut(s) | 1960 |
| Eco32I | GATATC | 1 cut(s) | 1877 |
| Eco47I | GGWCC | 2 cut(s) | 1958, 1973 |
| Eco47III | AGCGCT | 1 cut(s) | 1316 |
| Eco52I | CGGCCG | 1 cut(s) | 108 |
| Eco57I | CTGAAG | 1 cut(s) | 1359 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1943 |
| EcoRII | CCWGG | 7 cut(s) | 775, 1225, 1290, 1670, 1830, 1954, 1969 |
| EcoRV | GATATC | 1 cut(s) | 1877 |
| EcoT14I | CCWWGG | 2 cut(s) | 45, 803 |
| EcoT22I | ATGCAT | 1 cut(s) | 1645 |
| ErhI | CCWWGG | 2 cut(s) | 45, 803 |
| FaqI | GGGAC | 5 cut(s) | 461, 637, 865, 987, 1323 |
| FauI | CCCGC | 1 cut(s) | 1762 |
| FblI | GTMKAC | 2 cut(s) | 707, 1244 |
| FokI | GGATG | 9 cut(s) | 170, 422, 632, 881, 956, 966, 1330, 1504, 1961 |
| FspBI | CTAG | 4 cut(s) | 732, 1257, 1368, 1817 |
| GlaI | GCGC | 4 cut(s) | 1206, 1316, 1553, 1718 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeII | RGCGCY | 1 cut(s) | 1318 |
| HaeIII | GGCC | 2 cut(s) | 110, 1435 |
| HapII | CCGG | 2 cut(s) | 1152, 1347 |
| HhaI | GCGC | 4 cut(s) | 1207, 1317, 1554, 1719 |
| Hin6I | GCGC | 4 cut(s) | 1205, 1315, 1552, 1717 |
| HinP1I | GCGC | 4 cut(s) | 1205, 1315, 1552, 1717 |
| HindIII | AAGCTT | 2 cut(s) | 495, 537 |
| HinfI | GANTC | 8 cut(s) | 38, 521, 1084, 1117, 1144, 1396, 1760, 2027 |
| HpaII | CCGG | 2 cut(s) | 1152, 1347 |
| HphI | GGTGA | 6 cut(s) | 181, 578, 590, 902, 1743, 2003 |
| Hpy166II | GTNNAC | 5 cut(s) | 708, 772, 1088, 1245, 1933 |
| Hpy188I | TCNGA | 5 cut(s) | 322, 553, 845, 1577, 2032 |
| Hpy188III | TCNNGA | 9 cut(s) | 53, 119, 155, 662, 670, 1067, 1546, 1764, 1965 |
| Hpy8I | GTNNAC | 5 cut(s) | 708, 772, 1088, 1245, 1933 |
| Hpy99I | CGWCG | 2 cut(s) | 1308, 1966 |
| HpyCH4III | ACNGT | 4 cut(s) | 344, 470, 1906, 1962 |
| HpyCH4IV | ACGT | 1 cut(s) | 287 |
| HpyF3I | CTNAG | 8 cut(s) | 375, 552, 1250, 1286, 1485, 1588, 1853, 2068 |
| HpySE526I | ACGT | 1 cut(s) | 287 |
| HspAI | GCGC | 4 cut(s) | 1205, 1315, 1552, 1717 |
| LguI | GCTCTTC | 2 cut(s) | 342, 987 |
| LmnI | GCTCC | 5 cut(s) | 203, 1227, 1698, 2053, 2077 |
| LweI | GCATC | 9 cut(s) | 400, 859, 944, 1441, 1526, 1539, 1630, 1652, 1939 |
| MaeI | CTAG | 4 cut(s) | 732, 1257, 1368, 1817 |
| MaeII | ACGT | 1 cut(s) | 287 |
| MaeIII | GTNAC | 2 cut(s) | 1488, 2009 |
| MfeI | CAATTG | 1 cut(s) | 1464 |
| MhlI | GDGCHC | 1 cut(s) | 764 |
| MluCI | AATT | 6 cut(s) | 271, 481, 1409, 1464, 1735, 1792 |
| MlyI | GAGTC | 3 cut(s) | 32, 1093, 1138 |
| MmeI | TCCRAC | 4 cut(s) | 1172, 1559, 1806, 1925 |
| Mph1103I | ATGCAT | 1 cut(s) | 1645 |
| MroXI | GAANNNNTTC | 1 cut(s) | 996 |
| MseI | TTAA | 4 cut(s) | 303, 429, 1944, 2092 |
| MslI | CAYNNNNRTG | 4 cut(s) | 263, 1565, 1635, 1737 |
| MspA1I | CMGCKG | 6 cut(s) | 9, 374, 1028, 1679, 1696, 1757 |
| MspI | CCGG | 2 cut(s) | 1152, 1347 |
| MspR9I | CCNGG | 7 cut(s) | 777, 1227, 1292, 1672, 1832, 1956, 1971 |
| MunI | CAATTG | 1 cut(s) | 1464 |
| MvaI | CCWGG | 7 cut(s) | 777, 1227, 1292, 1672, 1832, 1956, 1971 |
| NcoI | CCATGG | 1 cut(s) | 45 |
| NlaIV | GGNNCC | 2 cut(s) | 199, 1700 |
| NmuCI | GTSAC | 1 cut(s) | 2009 |
| NsiI | ATGCAT | 1 cut(s) | 1645 |
| NspI | RCATGY | 2 cut(s) | 1183, 1570 |
| NspV | TTCGAA | 1 cut(s) | 14 |
| PagI | TCATGA | 1 cut(s) | 52 |
| PaqCI | CACCTGC | 1 cut(s) | 469 |
| PasI | CCCWGGG | 1 cut(s) | 776 |
| PciI | ACATGT | 1 cut(s) | 1179 |
| PciSI | GCTCTTC | 2 cut(s) | 342, 987 |
| PdmI | GAANNNNTTC | 1 cut(s) | 996 |
| PfeI | GAWTC | 5 cut(s) | 521, 1117, 1396, 1760, 2027 |
| PinAI | ACCGGT | 1 cut(s) | 1151 |
| PleI | GAGTC | 3 cut(s) | 32, 1092, 1138 |
| PpsI | GAGTC | 3 cut(s) | 32, 1092, 1138 |
| PscI | ACATGT | 1 cut(s) | 1179 |
| Psp6I | CCWGG | 7 cut(s) | 775, 1225, 1290, 1670, 1830, 1954, 1969 |
| PspGI | CCWGG | 7 cut(s) | 775, 1225, 1290, 1670, 1830, 1954, 1969 |
| PspN4I | GGNNCC | 2 cut(s) | 199, 1700 |
| PspPI | GGNCC | 3 cut(s) | 1434, 1958, 1973 |
| PstI | CTGCAG | 1 cut(s) | 373 |
| PvuII | CAGCTG | 3 cut(s) | 374, 1028, 1679 |
| RsaI | GTAC | 3 cut(s) | 771, 923, 2066 |
| RsaNI | GTAC | 3 cut(s) | 770, 922, 2065 |
| RseI | CAYNNNNRTG | 4 cut(s) | 263, 1565, 1635, 1737 |
| SapI | GCTCTTC | 2 cut(s) | 342, 987 |
| SaqAI | TTAA | 4 cut(s) | 303, 429, 1944, 2092 |
| Sau96I | GGNCC | 3 cut(s) | 1434, 1958, 1973 |
| SchI | GAGTC | 3 cut(s) | 32, 1093, 1138 |
| ScrFI | CCNGG | 7 cut(s) | 777, 1227, 1292, 1672, 1832, 1956, 1971 |
| SduI | GDGCHC | 1 cut(s) | 764 |
| SfaNI | GCATC | 9 cut(s) | 400, 859, 944, 1441, 1526, 1539, 1630, 1652, 1939 |
| SfcI | CTRYAG | 1 cut(s) | 369 |
| SfuI | TTCGAA | 1 cut(s) | 14 |
| SinI | GGWCC | 2 cut(s) | 1958, 1973 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 263, 1565, 1635, 1737 |
| SmlI | CTYRAG | 1 cut(s) | 512 |
| SmoI | CTYRAG | 1 cut(s) | 512 |
| Sse9I | AATT | 6 cut(s) | 271, 481, 1409, 1464, 1735, 1792 |
| SspI | AATATT | 1 cut(s) | 1201 |
| SspMI | CTAG | 4 cut(s) | 732, 1257, 1368, 1817 |
| StyD4I | CCNGG | 7 cut(s) | 775, 1225, 1290, 1670, 1830, 1954, 1969 |
| StyI | CCWWGG | 2 cut(s) | 45, 803 |
| TaaI | ACNGT | 4 cut(s) | 344, 470, 1906, 1962 |
| TaiI | ACGT | 1 cut(s) | 290 |
| TaqI | TCGA | 9 cut(s) | 14, 41, 86, 485, 1399, 1446, 1879, 1964, 2016 |
| TasI | AATT | 6 cut(s) | 271, 481, 1409, 1464, 1735, 1792 |
| TatI | WGTACW | 2 cut(s) | 769, 2064 |
| TauI | GCSGC | 4 cut(s) | 107, 110, 796, 1658 |
| TfiI | GAWTC | 5 cut(s) | 521, 1117, 1396, 1760, 2027 |
| Tru1I | TTAA | 4 cut(s) | 303, 429, 1944, 2092 |
| Tru9I | TTAA | 4 cut(s) | 303, 429, 1944, 2092 |
| TscAI | CASTG | 4 cut(s) | 40, 347, 1726, 2012 |
| TseFI | GTSAC | 1 cut(s) | 2009 |
| Tsp45I | GTSAC | 1 cut(s) | 2009 |
| TspDTI | ATGAA | 6 cut(s) | 275, 549, 1184, 1577, 1593, 1699 |
| TspGWI | ACGGA | 2 cut(s) | 641, 1095 |
| TspRI | CASTG | 4 cut(s) | 40, 347, 1726, 2012 |
| VpaK11BI | GGWCC | 2 cut(s) | 1958, 1973 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1943 |
| XceI | RCATGY | 2 cut(s) | 1183, 1570 |
| XmiI | GTMKAC | 2 cut(s) | 707, 1244 |
| XmnI | GAANNNNTTC | 1 cut(s) | 996 |
| XspI | CTAG | 4 cut(s) | 732, 1257, 1368, 1817 |
| Zsp2I | ATGCAT | 1 cut(s) | 1645 |