Rmu_ssc0000133.1_g000002

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000133.1
Physical Location & Seq
Reverse (-)
5919 .. 8009
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000133.1_g000002.1.cds

Sequence Viewer

Length: 2091 bp
atgtgcagcggttcaaagaggaaaccttgttccactgactcgaccatggatcatgagaaacaggaagggttgaggtttagcttttcgattttgttggagttagcagcggccgatgatcttgatgggttcaaaagtgctgtggaggaagatggtcatgatgttgatgaggtgagttattggtatgggaggcgtgttggctccaagaagatggggtttgaggagagaacaccgcttatgattgctgctatgtttggcagcatgaatgtgttgaattatatcctccaaacgtgtcgcgttgatgttaatagagcttgtggttcagatagagccacggctcttcactgtgctgctgctggtggctctggtgctgcagctgaggttgtcaaggtcttgcttgctgcttctgcggatgccagttctattgatgttaatggaaaccaagcaggggacttgatcgcacctgcctacagttcagccttcaattcgaggaagaaagctttggaagtcatgctcaagggcgattcgggttttgatgaagcttttgatttctctgagcagatggctagggaagcagaaggtgaagatcagcaagagatcacaactcctcgtgcctcaaaggatgggacggagaggaaggaatatcctgttgatctttcccttcctgacatcaagaacgggatttatagcacagatgagtttagaatgtatactttcaaggtcaagccttgctctagggcttactcacacgattggacagagtgcccatttgtacacccaggggaaaatgcaaggcggcgtgatccaaggaaatatcattatagctgcgttccttgcccagagttcagaaaggggacttgcaggcaaggggatgcttgtgaatatgcacatggtatttttgaatgttggcttcaccctgcccagtaccgcacccgtctttgcaaggatgagactgggtgcacaagaagggtctgtttctttgctcacaagacagaagagcttcgtcccctctatgcttcaacaggttcggctgtgccttctcccagatcattctctgcgggtgcttctctggacatgggatcattgagtccactttccctcaactctccgtctgccctgattccttctgtttcaactccacccatgactccaactggtgcttcttcccctatgaatggaaacatgtggcaaaatcagccaaatattgcgccccccaccttgcagctcccaggtagcaggttgaagtctactctaagtgctagagatatggatttagacatggaattccttagcctggaaaatcatcgtcgcaggcagcgcttgatagatgagttgtccagtccctcatccggctggaataatggcttatctagtccttcagccttcgcggcctctgggaatcgaataggggaattgaataggattggaggagtgaggcccactaacctcgaagatgcttttggatcaattgatcctgcaatgttgcctcagttacaggggctttcacgggataccacagcatcccagttgcaatctccaactggtatccagatgcgccaaaacatgaacatgcaactccgatcaagctactcaagcagccctgcttcatctcctgttaggggttctcctttgcatgggtttgatgcatctggtgcagcagcagttttgagttccaggtcagctgcatttgcaaagcagcggagccagagcttcattgagcgcagtgcaaaccacaattatgggttttcctcacccgctgattctggaactccaaaaacctccaacctttcaaattggggctctcctagtggaaagctagactggggtatccagggggaagaactgaataagctgaggaaatctgcttcttttggataccgaaacaatggaaacagcgttccaactgttgatgagcctgatgtatcttgggtaaacacccttgttaaggatgcaccaggaccttcgagacctggaccacttggttttgaagaccagcagcagcagcagcagtgtcacctcgacaatggagattcagagatactccctgcttgggtggagcagatgtacttagagcaggagcagatggtggcttaa

Protein Analysis

696

Amino Acids

75.89

Weight (kDa)

5.67

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011766)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 469
Acc36I ACCTGC 2 cut(s) 469, 1224
AccI GTMKAC 2 cut(s) 707, 1244
AccII CGCG 2 cut(s) 294, 1385
AclWI GGATC 5 cut(s) 57, 794, 1084, 1463, 1468
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 1280
AcuI CTGAAG 1 cut(s) 1359
AfaI GTAC 3 cut(s) 771, 923, 2063
AfeI AGCGCT 1 cut(s) 1316
AfiI CCNNNNNNNGG 8 cut(s) 445, 1172, 1291, 1346, 1616, 1631, 1942, 2047
AflIII ACRYGT 2 cut(s) 287, 1179
AjnI CCWGG 7 cut(s) 775, 1225, 1290, 1670, 1827, 1951, 1966
AjuI GAANNNNNNNTTGG 6 cut(s) 482, 514, 1141, 1173, 1440, 1472
AloI GAACNNNNNNTCC 4 cut(s) 13, 45, 1878, 1910
Alw21I GWGCWC 1 cut(s) 959
Alw26I GTCTC 2 cut(s) 941, 1957
Alw44I GTGCAC 1 cut(s) 955
AlwI GGATC 5 cut(s) 57, 794, 1084, 1463, 1468
Aor51HI AGCGCT 1 cut(s) 1316
AoxI GGCC 3 cut(s) 108, 1386, 1433
ApaLI GTGCAC 1 cut(s) 955
ApoI RAATTY 1 cut(s) 1280
Asp700I GAANNNNTTC 1 cut(s) 996
AspLEI GCGC 4 cut(s) 1207, 1317, 1554, 1719
AspS9I GGNCC 3 cut(s) 1434, 1955, 1970
AsuHPI GGTGA 5 cut(s) 181, 590, 902, 1740, 2003
AvaII GGWCC 2 cut(s) 1955, 1970
BaeGI GKGCMC 2 cut(s) 764, 959
BaeI ACNNNNGTAYC 2 cut(s) 1807, 1840
BanII GRGCYC 1 cut(s) 1799
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 1992
Bbv12I GWGCWC 1 cut(s) 959
BbvCI CCTCAGC 2 cut(s) 375, 1850
BccI CCATC 6 cut(s) 116, 143, 202, 553, 614, 2074
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 7 cut(s) 777, 1227, 1292, 1672, 1829, 1953, 1968
BciVI GTATCC 4 cut(s) 1501, 1553, 1835, 1865
BcoDI GTCTC 2 cut(s) 941, 1957
BfaI CTAG 6 cut(s) 564, 732, 1257, 1368, 1803, 1814
BfmI CTRYAG 2 cut(s) 369, 466
BfoI RGCGCY 1 cut(s) 1318
BfuAI ACCTGC 2 cut(s) 469, 1224
BfuI GTATCC 4 cut(s) 1501, 1553, 1835, 1865
BglI GCCNNNNNGGC 1 cut(s) 1385
Bme1390I CCNGG 7 cut(s) 777, 1227, 1292, 1672, 1829, 1953, 1968
Bme18I GGWCC 2 cut(s) 1955, 1970
BmgT120I GGNCC 3 cut(s) 1434, 1955, 1970
BmiI GGNNCC 2 cut(s) 199, 1700
BmrFI CCNGG 7 cut(s) 777, 1227, 1292, 1672, 1829, 1953, 1968
BmrI ACTGGG 4 cut(s) 913, 960, 1516, 1828
BmsI GCATC 8 cut(s) 400, 859, 1441, 1526, 1539, 1630, 1652, 1936
BmuI ACTGGG 4 cut(s) 913, 960, 1516, 1828
BpiI GAAGAC 1 cut(s) 1992
Bpu10I CCTNAGC 3 cut(s) 375, 1286, 1850
BpuEI CTTGAG 2 cut(s) 497, 1573
BsaI GGTCTC 1 cut(s) 1957
BsaJI CCNNGG 7 cut(s) 45, 330, 775, 776, 803, 1225, 1828
BsaXI ACNNNNNCTCC 2 cut(s) 2045, 2075
Bsc4I CCNNNNNNNGG 8 cut(s) 445, 1172, 1291, 1346, 1616, 1631, 1942, 2047
Bse1I ACTGG 8 cut(s) 414, 919, 955, 1156, 1335, 1522, 1543, 1823
Bse3DI GCAATG 1 cut(s) 1482
BseBI CCWGG 7 cut(s) 777, 1227, 1292, 1672, 1829, 1953, 1968
BseDI CCNNGG 7 cut(s) 45, 330, 775, 776, 803, 1225, 1828
BseGI GGATG 7 cut(s) 415, 625, 874, 949, 1343, 1517, 1951
BseLI CCNNNNNNNGG 8 cut(s) 445, 1172, 1291, 1346, 1616, 1631, 1942, 2047
BseMI GCAATG 1 cut(s) 1482
BseMII CTCAG 4 cut(s) 366, 543, 1499, 1841
BseNI ACTGG 8 cut(s) 414, 919, 955, 1156, 1335, 1522, 1543, 1823
BseRI GAGGAG 3 cut(s) 233, 594, 1440
BseSI GKGCMC 2 cut(s) 764, 959
BseX3I CGGCCG 1 cut(s) 108
BsgI GTGCAG 2 cut(s) 25, 1671
Bsh1236I CGCG 2 cut(s) 294, 1385
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 110, 1388, 1435
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 959
BsiSI CCGG 1 cut(s) 1347
BslFI GGGAC 5 cut(s) 461, 637, 865, 987, 1323
BslI CCNNNNNNNGG 8 cut(s) 445, 1172, 1291, 1346, 1616, 1631, 1942, 2047
BsmAI GTCTC 2 cut(s) 941, 1957
BsmFI GGGAC 5 cut(s) 461, 637, 865, 987, 1323
BsnI GGCC 3 cut(s) 110, 1388, 1435
Bso31I GGTCTC 1 cut(s) 1957
Bsp1286I GDGCHC 3 cut(s) 764, 959, 1799
Bsp1407I TGTACA 1 cut(s) 769
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 3 cut(s) 110, 1388, 1435
BspCNI CTCAG 4 cut(s) 367, 544, 1498, 1842
BspFNI CGCG 2 cut(s) 294, 1385
BspHI TCATGA 2 cut(s) 52, 154
BspLI GGNNCC 2 cut(s) 199, 1700
BspMAI CTGCAG 1 cut(s) 373
BspMI ACCTGC 2 cut(s) 469, 1224
BspPI GGATC 5 cut(s) 57, 794, 1084, 1463, 1468
BspQI GCTCTTC 2 cut(s) 342, 987
BspTNI GGTCTC 1 cut(s) 1957
BsrDI GCAATG 1 cut(s) 1482
BsrGI TGTACA 1 cut(s) 769
BsrI ACTGG 8 cut(s) 414, 919, 955, 1156, 1335, 1522, 1543, 1823
BssECI CCNNGG 7 cut(s) 45, 330, 775, 776, 803, 1225, 1828
BssNAI GTATAC 1 cut(s) 708
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 2 cut(s) 45, 803
Bst1107I GTATAC 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 7 cut(s) 777, 1227, 1292, 1672, 1829, 1953, 1968
Bst4CI ACNGT 3 cut(s) 344, 470, 1903
Bst6I CTCTTC 2 cut(s) 342, 987
BstAPI GCANNNNNTGC 1 cut(s) 1649
BstAUI TGTACA 1 cut(s) 769
BstC8I GCNNGC 3 cut(s) 396, 860, 1310
BstDEI CTNAG 7 cut(s) 375, 552, 1250, 1286, 1485, 1850, 2065
BstDSI CCRYGG 2 cut(s) 45, 330
BstENI CCTNNNNNAGG 1 cut(s) 1940
BstF5I GGATG 7 cut(s) 415, 625, 874, 949, 1343, 1517, 1951
BstFNI CGCG 2 cut(s) 294, 1385
BstH2I RGCGCY 1 cut(s) 1318
BstHHI GCGC 4 cut(s) 1207, 1317, 1554, 1719
BstMAI GTCTC 2 cut(s) 941, 1957
BstMCI CGRYCG 1 cut(s) 111
BstNI CCWGG 7 cut(s) 777, 1227, 1292, 1672, 1829, 1953, 1968
BstNSI RCATGY 2 cut(s) 1183, 1570
BstSCI CCNGG 7 cut(s) 775, 1225, 1290, 1670, 1827, 1951, 1966
BstSFI CTRYAG 2 cut(s) 369, 466
BstSLI GKGCMC 2 cut(s) 764, 959
BstUI CGCG 2 cut(s) 294, 1385
BstV2I GAAGAC 1 cut(s) 1992
BstXI CCANNNNNNTGG 2 cut(s) 208, 1736
BstZ17I GTATAC 1 cut(s) 708
BstZI CGGCCG 1 cut(s) 108
BsuI GTATCC 4 cut(s) 1501, 1553, 1835, 1865
BsuRI GGCC 3 cut(s) 110, 1388, 1435
BtgI CCRYGG 2 cut(s) 45, 330
BtsCI GGATG 7 cut(s) 415, 625, 874, 949, 1343, 1517, 1951
BtsI GCAGTG 2 cut(s) 1726, 2012
BtsIMutI CAGTG 4 cut(s) 33, 340, 1726, 2012
BveI ACCTGC 2 cut(s) 469, 1224
Cac8I GCNNGC 3 cut(s) 396, 860, 1310
CciI TCATGA 2 cut(s) 52, 154
CfoI GCGC 4 cut(s) 1207, 1317, 1554, 1719
Cfr13I GGNCC 3 cut(s) 1434, 1955, 1970
Csp6I GTAC 3 cut(s) 770, 922, 2062
CviQI GTAC 3 cut(s) 770, 922, 2062
DdeI CTNAG 7 cut(s) 375, 552, 1250, 1286, 1485, 1850, 2065
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 342, 987
EarI CTCTTC 2 cut(s) 342, 987
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 45, 803
Eco24I GRGCYC 1 cut(s) 1799
Eco31I GGTCTC 1 cut(s) 1957
Eco47I GGWCC 2 cut(s) 1955, 1970
Eco47III AGCGCT 1 cut(s) 1316
Eco52I CGGCCG 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 1359
EcoNI CCTNNNNNAGG 1 cut(s) 1940
EcoO109I RGGNCCY 1 cut(s) 1955
EcoRI GAATTC 1 cut(s) 1280
EcoRII CCWGG 7 cut(s) 775, 1225, 1290, 1670, 1827, 1951, 1966
EcoT14I CCWWGG 2 cut(s) 45, 803
EcoT22I ATGCAT 1 cut(s) 1645
EcoT38I GRGCYC 1 cut(s) 1799
ErhI CCWWGG 2 cut(s) 45, 803
FaqI GGGAC 5 cut(s) 461, 637, 865, 987, 1323
FauI CCCGC 2 cut(s) 1048, 1759
FblI GTMKAC 2 cut(s) 707, 1244
FokI GGATG 7 cut(s) 422, 632, 881, 956, 1330, 1504, 1958
FriOI GRGCYC 1 cut(s) 1799
FspBI CTAG 6 cut(s) 564, 732, 1257, 1368, 1803, 1814
GlaI GCGC 4 cut(s) 1206, 1316, 1553, 1718
HaeII RGCGCY 1 cut(s) 1318
HaeIII GGCC 3 cut(s) 110, 1388, 1435
HapII CCGG 1 cut(s) 1347
HhaI GCGC 4 cut(s) 1207, 1317, 1554, 1719
Hin6I GCGC 4 cut(s) 1205, 1315, 1552, 1717
HinP1I GCGC 4 cut(s) 1205, 1315, 1552, 1717
HindIII AAGCTT 2 cut(s) 495, 537
HinfI GANTC 8 cut(s) 38, 521, 1084, 1117, 1144, 1396, 1757, 2027
HpaII CCGG 1 cut(s) 1347
HphI GGTGA 5 cut(s) 181, 590, 902, 1740, 2003
Hpy166II GTNNAC 6 cut(s) 708, 772, 957, 1088, 1245, 1930
Hpy188I TCNGA 5 cut(s) 322, 553, 845, 1577, 2032
Hpy188III TCNNGA 9 cut(s) 53, 119, 155, 662, 670, 1067, 1546, 1761, 1962
Hpy8I GTNNAC 6 cut(s) 708, 772, 957, 1088, 1245, 1930
Hpy99I CGWCG 1 cut(s) 1308
HpyCH4III ACNGT 3 cut(s) 344, 470, 1903
HpyCH4IV ACGT 1 cut(s) 287
HpyF3I CTNAG 7 cut(s) 375, 552, 1250, 1286, 1485, 1850, 2065
HpySE526I ACGT 1 cut(s) 287
HspAI GCGC 4 cut(s) 1205, 1315, 1552, 1717
LguI GCTCTTC 2 cut(s) 342, 987
LmnI GCTCC 5 cut(s) 203, 1227, 1698, 2053, 2074
LweI GCATC 8 cut(s) 400, 859, 1441, 1526, 1539, 1630, 1652, 1936
MaeI CTAG 6 cut(s) 564, 732, 1257, 1368, 1803, 1814
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 1488, 2009
MfeI CAATTG 1 cut(s) 1464
MhlI GDGCHC 3 cut(s) 764, 959, 1799
MluCI AATT 7 cut(s) 271, 481, 1280, 1409, 1464, 1732, 1789
MlyI GAGTC 3 cut(s) 32, 1093, 1138
MmeI TCCRAC 5 cut(s) 75, 1172, 1559, 1803, 1922
Mph1103I ATGCAT 1 cut(s) 1645
MroXI GAANNNNTTC 1 cut(s) 996
MseI TTAA 4 cut(s) 303, 429, 1941, 2089
MslI CAYNNNNRTG 3 cut(s) 263, 1565, 1734
MspA1I CMGCKG 6 cut(s) 9, 107, 374, 1679, 1696, 1754
MspI CCGG 1 cut(s) 1347
MspR9I CCNGG 7 cut(s) 777, 1227, 1292, 1672, 1829, 1953, 1968
MunI CAATTG 1 cut(s) 1464
MvaI CCWGG 7 cut(s) 777, 1227, 1292, 1672, 1829, 1953, 1968
MvnI CGCG 2 cut(s) 294, 1385
NcoI CCATGG 1 cut(s) 45
NlaIV GGNNCC 2 cut(s) 199, 1700
NmuCI GTSAC 1 cut(s) 2009
NsiI ATGCAT 1 cut(s) 1645
NspI RCATGY 2 cut(s) 1183, 1570
PagI TCATGA 2 cut(s) 52, 154
PaqCI CACCTGC 1 cut(s) 469
PasI CCCWGGG 1 cut(s) 776
PciI ACATGT 1 cut(s) 1179
PciSI GCTCTTC 2 cut(s) 342, 987
PdmI GAANNNNTTC 1 cut(s) 996
PfeI GAWTC 5 cut(s) 521, 1117, 1396, 1757, 2027
PleI GAGTC 3 cut(s) 32, 1092, 1138
PpsI GAGTC 3 cut(s) 32, 1092, 1138
PpuMI RGGWCCY 1 cut(s) 1955
PscI ACATGT 1 cut(s) 1179
Psp5II RGGWCCY 1 cut(s) 1955
Psp6I CCWGG 7 cut(s) 775, 1225, 1290, 1670, 1827, 1951, 1966
PspGI CCWGG 7 cut(s) 775, 1225, 1290, 1670, 1827, 1951, 1966
PspN4I GGNNCC 2 cut(s) 199, 1700
PspPI GGNCC 3 cut(s) 1434, 1955, 1970
PspPPI RGGWCCY 1 cut(s) 1955
PstI CTGCAG 1 cut(s) 373
PvuII CAGCTG 2 cut(s) 374, 1679
RsaI GTAC 3 cut(s) 771, 923, 2063
RsaNI GTAC 3 cut(s) 770, 922, 2062
RseI CAYNNNNRTG 3 cut(s) 263, 1565, 1734
SapI GCTCTTC 2 cut(s) 342, 987
SaqAI TTAA 4 cut(s) 303, 429, 1941, 2089
Sau96I GGNCC 3 cut(s) 1434, 1955, 1970
SchI GAGTC 3 cut(s) 32, 1093, 1138
ScrFI CCNGG 7 cut(s) 777, 1227, 1292, 1672, 1829, 1953, 1968
SduI GDGCHC 3 cut(s) 764, 959, 1799
SfaNI GCATC 8 cut(s) 400, 859, 1441, 1526, 1539, 1630, 1652, 1936
SfcI CTRYAG 2 cut(s) 369, 466
SinI GGWCC 2 cut(s) 1955, 1970
SmiMI CAYNNNNRTG 3 cut(s) 263, 1565, 1734
SmlI CTYRAG 2 cut(s) 512, 1588
SmoI CTYRAG 2 cut(s) 512, 1588
Sse9I AATT 7 cut(s) 271, 481, 1280, 1409, 1464, 1732, 1789
SspI AATATT 1 cut(s) 1201
SspMI CTAG 6 cut(s) 564, 732, 1257, 1368, 1803, 1814
StyD4I CCNGG 7 cut(s) 775, 1225, 1290, 1670, 1827, 1951, 1966
StyI CCWWGG 2 cut(s) 45, 803
TaaI ACNGT 3 cut(s) 344, 470, 1903
TaiI ACGT 1 cut(s) 290
TaqI TCGA 7 cut(s) 41, 86, 485, 1399, 1446, 1961, 2016
TasI AATT 7 cut(s) 271, 481, 1280, 1409, 1464, 1732, 1789
TatI WGTACW 2 cut(s) 769, 2061
TauI GCSGC 3 cut(s) 110, 796, 1388
TfiI GAWTC 5 cut(s) 521, 1117, 1396, 1757, 2027
Tru1I TTAA 4 cut(s) 303, 429, 1941, 2089
Tru9I TTAA 4 cut(s) 303, 429, 1941, 2089
TscAI CASTG 4 cut(s) 40, 347, 1726, 2012
TseFI GTSAC 1 cut(s) 2009
Tsp45I GTSAC 1 cut(s) 2009
TspDTI ATGAA 6 cut(s) 275, 549, 1184, 1577, 1593, 1699
TspGWI ACGGA 2 cut(s) 641, 1095
TspRI CASTG 4 cut(s) 40, 347, 1726, 2012
VneI GTGCAC 1 cut(s) 955
VpaK11BI GGWCC 2 cut(s) 1955, 1970
XagI CCTNNNNNAGG 1 cut(s) 1940
XapI RAATTY 1 cut(s) 1280
XceI RCATGY 2 cut(s) 1183, 1570
XmiI GTMKAC 2 cut(s) 707, 1244
XmnI GAANNNNTTC 1 cut(s) 996
XspI CTAG 6 cut(s) 564, 732, 1257, 1368, 1803, 1814
Zsp2I ATGCAT 1 cut(s) 1645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.