MD11G1072800.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011766
Physical Location & Seq
Reverse (-)
6181344 .. 6184778
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1072800.v1.1.491

Sequence Viewer

Length: 2121 bp
ATGTGCAGTGGTTCCAAGAGGAATCCTTCTTCCACTGATACGATCATGGAGCGTGAGAAACAAGAAGGGACGCGGTTTAACTTTTCGATTTTGCTTGAACTAGCCGCCTGCGATGATCATGAAGGGTTCAAAAGGGCTGTAGAGGAAGAGGGTCTTGATGTTGATGAGGCGAGCTATTGGTGTGGGAGGCTGATTGGCTCGAAGAAGTTGGGGTTTGAGGAGAGGACTCCCCTCATGGTCGCCGCTATGTTCGGTAGCATGAACGTGTTGAATTATATTCTTCAATCCTGTCTTGTTGATGTTAATAAAGCCTGCGGTTCAGATAGAGCTACAGCTCTTCATTGTGCTGTTGCTGGTGGCTCTGCTGCTTCGGCTGAGGTTGTCAAGCTCTTGCTTGCTGCTTCTGCTGATGCGAGTTCTCTTGATGCTAATGGAAACCAACCAGGTGACTTGATCGCACCTGCTTATAGTTCGAGCTTCGGTTCGAGGAAGAAAGCTTTGGAGGTCATGCTCAAGGGTGTTCCCAGTATTGATGAACCTTTCGACTTCTCGGAGCAAATGATTAATGAGACAGAAGGGCAAGAACAGCAAGAGATGACAACTCCTCGTGCTTCGAAGGATGGAACAGAGAAGAAAGAGTATCCTGTTGATCTTTCTCTTCCGGACATCAAGAACGGGATTTATAGCACGGATGAGTTCAGAATGTATACTTTCAAGGTCAAGCCGTGCTCAAGGGCCTACTCTCATGACTGGACAGAGTGTCCGTTCGTCCACCCGGGGGAAAATGCAAGGCGGCGTGATCCAAGGAAATATCATTACAGCTGTGTTCCTTGCCCGGAGTTCAGAAAGGGGACCTGCAGACAGGGAGATGCTTGTGAATATGCACATGGTATTTTTGAATGTTGGCTTCACCCTGCCCAGTACCGTACCCGTCTTTGCAAGGATGAGACGGGATGCACAAGAAGGGTCTGTTTCTTTGCTCACAAGCCAGAAGAGCTTCGCCCCTTGTATGCTTCGACAGGTTCTGCTGTGCCTTCTCCGAGATCATTCTCAGCCACTGCTGCTTCTCTGGACATGGGGTCAATTACCCCGCTTTCCCTCAACTCTCCATCCATGATGATTCCTCCTGATTCAACTCCGCCCATGACTCCCACAGGACCTTCTTCTCCTATGGGTGGAAACATGTGGCAGAACAATCCAAACTTTGCACCCCCCACTTTGCAGCTTCCAGGTAGCAGATTGAAATCTACTCTGAGTGCTAGAGATATGGATTTTGAGATCGAGATGCTTAGCCTGGAGAGGGATCGTCGAAGGCAGCAACGCTTGATTGATGAGATGTCCGGTTCCCCATCTAGCTGGAACAAAGGCTTATCTCCTGCATCGCCCTTTTCTGCATCTGGGAATCGAACAGGGGAATTGAATACCTTCGGAGTAGTGAACCCTACTAACCTTGACGACATTTTTGGATCTCTTGATCCTGCAATTTTGCCTCAATTTAATGGCCTTTCACGGGATGCAACAGCATCCCAGTTACATTCTCCAACTGGGATCCAGATGCGCCAAAATATGAACCTGCAGGCCCGTCCCAGCTACTCTGCCAGCCTCTCATCCTCTCCTGTACGGGCTTCTCCGATGTTTGGAGTTGATGCATCTAGTGCAGCTGCTGTTTTTAATTCAAGGTCTGCTGCATTTGCAAAGAGGAGTCAGAGCTTCATTGAGCGTAGTGCTGGCAACCGTAATTCTGTGGTTTCTTCCTCTGCTGATTTTGGAACAATAAAGCCCTCTAACCTTTCAGATTGGGGCTCTCCTGGTGGCAAATTAGACTGGGGTATCCAGGGCGAAGAGCTGAACAAGCTGAGGAAATCTGCTTCTTTTGGATTCCGAAGCAACGGGAGCAGTTCCCCAACAGCTTCATCCATGATGCCAACAAATGGTGATGAGCCTGACGTATCATGGGTTCAATCTCTTGTCAAGGATGGACCTCAAGCCTCGCAACAACGCGGGCAATTTGGATTCGAGGACCAGCAGCAGCAGCAGTGTCACCCTAACAACGGAGGTCCAGAGATGCTCCCCGCTTGGGTGGAGCAGCTTTACTTTGAGCAGGAGCAGATGGTGGCTTAA

Protein Analysis

707

Amino Acids

77.07

Weight (kDa)

5.53

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 70 - 138 5.2e-08 Ankyrin repeats (3 copies)
zf-CCCH_AtC3H23 PF25512 232 - 265 9.6e-21 AtC3H23-like, CCCH zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011766)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58620
fragaria_vesca FvH4_3g38750 FvH4_3g38750 FvH4_3g38750
malus_domestica MD03G1068400.v1.1 MD11G1072800.v1.1
prunus_persica Prupe.6G056300_v2.0.a1
pyrus_communis pycom03g05490 pycom11g06050
rosa_chinensis RchiOBHm_Chr5g0069901
rosa_laevigata RLG00000036106
rosa_multiflora Rmu_ssc0000133.1_g000002
rosa_roxburghii Rroxscaffold_1G00011160
rosa_rugosa Rorug05G0400600
rosa_samantha Rh5AG457700 Rh5BG476500 Rh5CG500300 Rh5DG488400
rosa_wichuraiana Rw5G042740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 469
Acc36I ACCTGC 3 cut(s) 469, 863, 1581
AccB7I CCANNNNNTGG 1 cut(s) 1931
AccI GTMKAC 1 cut(s) 707
AccII CGCG 2 cut(s) 73, 2001
AccIII TCCGGA 1 cut(s) 661
AciI CCGC 9 cut(s) 73, 105, 243, 315, 793, 1091, 1139, 2001, 2073
AclWI GGATC 6 cut(s) 794, 1311, 1469, 1474, 1543, 1556
AfaI GTAC 3 cut(s) 923, 928, 1620
AfiI CCNNNNNNNGG 8 cut(s) 778, 1175, 1300, 1510, 1637, 1931, 2051, 2077
AflIII ACRYGT 2 cut(s) 264, 1182
AhdI GACNNNNNGTC 2 cut(s) 759, 1078
AjnI CCWGG 5 cut(s) 442, 1228, 1293, 1807, 1833
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 2 cut(s) 563, 941
AlwI GGATC 6 cut(s) 794, 1311, 1469, 1474, 1543, 1556
AlwNI CAGNNNCTG 3 cut(s) 1025, 1058, 1664
Ama87I CYCGRG 1 cut(s) 775
Aor13HI TCCGGA 1 cut(s) 661
AoxI GGCC 3 cut(s) 735, 1501, 1578
ArsI GACNNNNNNTTYG 2 cut(s) 1445, 1477
AseI ATTAAT 1 cut(s) 564
Asp700I GAANNNNTTC 2 cut(s) 996, 1424
AspLEI GCGC 1 cut(s) 1560
AspS9I GGNCC 7 cut(s) 735, 852, 1157, 1579, 1979, 2020, 2057
AsuC2I CCSGG 3 cut(s) 776, 777, 836
AsuHPI GGTGA 4 cut(s) 458, 902, 1946, 2033
AsuII TTCGAA 1 cut(s) 614
AvaI CYCGRG 1 cut(s) 775
AvaII GGWCC 5 cut(s) 852, 1157, 1979, 2020, 2057
BaeI ACNNNNGTAYC 2 cut(s) 1813, 1846
BamHI GGATCC 1 cut(s) 1548
BanII GRGCYC 1 cut(s) 1805
BauI CACGAG 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 731
BbvCI CCTCAGC 2 cut(s) 375, 1856
BccI CCATC 5 cut(s) 614, 1117, 1357, 1970, 2104
BceAI ACGGC 1 cut(s) 709
BciT130I CCWGG 5 cut(s) 444, 1230, 1295, 1809, 1835
BciVI GTATCC 2 cut(s) 651, 1841
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 3 cut(s) 776, 777, 836
BcoDI GTCTC 2 cut(s) 563, 941
BfaI CTAG 4 cut(s) 101, 1260, 1353, 1653
BfmI CTRYAG 4 cut(s) 138, 330, 856, 1574
BfuAI ACCTGC 3 cut(s) 469, 863, 1581
BfuI GTATCC 2 cut(s) 651, 1841
BlpI GCTNAGC 1 cut(s) 1289
Bme1390I CCNGG 8 cut(s) 444, 776, 777, 836, 1230, 1295, 1809, 1835
Bme18I GGWCC 5 cut(s) 852, 1157, 1979, 2020, 2057
BmeRI GACNNNNNGTC 2 cut(s) 759, 1078
BmeT110I CYCGRG 1 cut(s) 775
BmgT120I GGNCC 7 cut(s) 735, 852, 1157, 1579, 1979, 2020, 2057
BmiI GGNNCC 4 cut(s) 13, 853, 1345, 1550
BmrFI CCNGG 8 cut(s) 444, 776, 777, 836, 1230, 1295, 1809, 1835
BmrI ACTGGG 5 cut(s) 519, 913, 1522, 1554, 1834
BmuI ACTGGG 5 cut(s) 519, 913, 1522, 1554, 1834
BpmI CTGGAG 1 cut(s) 1316
Bpu10I CCTNAGC 2 cut(s) 375, 1856
Bpu1102I GCTNAGC 1 cut(s) 1289
Bpu14I TTCGAA 1 cut(s) 614
BpuEI CTTGAG 3 cut(s) 497, 715, 1968
BpuMI CCSGG 3 cut(s) 776, 777, 836
BsaBI GATNNNNATC 1 cut(s) 1243
BsaJI CCNNGG 4 cut(s) 775, 776, 803, 1834
BsaWI WCCGGW 2 cut(s) 661, 1340
Bsc4I CCNNNNNNNGG 8 cut(s) 778, 1175, 1300, 1510, 1637, 1931, 2051, 2077
Bse1I ACTGG 6 cut(s) 525, 755, 919, 1528, 1549, 1829
Bse8I GATNNNNATC 1 cut(s) 1243
BseAI TCCGGA 1 cut(s) 661
BseBI CCWGG 5 cut(s) 444, 1230, 1295, 1809, 1835
BseDI CCNNGG 4 cut(s) 775, 776, 803, 1834
BseJI GATNNNNATC 1 cut(s) 1243
BseLI CCNNNNNNNGG 8 cut(s) 778, 1175, 1300, 1510, 1637, 1931, 2051, 2077
BseMII CTCAG 4 cut(s) 366, 1065, 1244, 1847
BseNI ACTGG 6 cut(s) 525, 755, 919, 1528, 1549, 1829
BseRI GAGGAG 3 cut(s) 233, 594, 1714
BseYI CCCAGC 1 cut(s) 1586
BsgI GTGCAG 2 cut(s) 25, 1677
Bsh1236I CGCG 2 cut(s) 73, 2001
BshFI GGCC 3 cut(s) 737, 1503, 1580
BsiHKAI GWGCWC 1 cut(s) 731
BsiHKCI CYCGRG 1 cut(s) 775
BsiSI CCGG 4 cut(s) 662, 776, 836, 1341
BslFI GGGAC 3 cut(s) 82, 865, 1569
BslI CCNNNNNNNGG 8 cut(s) 778, 1175, 1300, 1510, 1637, 1931, 2051, 2077
BsmAI GTCTC 2 cut(s) 563, 941
BsmBI CGTCTC 1 cut(s) 941
BsmFI GGGAC 3 cut(s) 82, 865, 1569
BsnI GGCC 3 cut(s) 737, 1503, 1580
BsoBI CYCGRG 1 cut(s) 775
Bsp119I TTCGAA 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 731, 1805
Bsp13I TCCGGA 1 cut(s) 661
Bsp1720I GCTNAGC 1 cut(s) 1289
BspACI CCGC 9 cut(s) 73, 105, 243, 315, 793, 1091, 1139, 2001, 2073
BspANI GGCC 3 cut(s) 737, 1503, 1580
BspCNI CTCAG 4 cut(s) 367, 1064, 1245, 1848
BspEI TCCGGA 1 cut(s) 661
BspFNI CGCG 2 cut(s) 73, 2001
BspHI TCATGA 2 cut(s) 118, 745
BspLI GGNNCC 4 cut(s) 13, 853, 1345, 1550
BspMAI CTGCAG 2 cut(s) 860, 1578
BspMI ACCTGC 3 cut(s) 469, 863, 1581
BspPI GGATC 6 cut(s) 794, 1311, 1469, 1474, 1543, 1556
BspQI GCTCTTC 3 cut(s) 342, 987, 1836
BspT104I TTCGAA 1 cut(s) 614
BsrI ACTGG 6 cut(s) 525, 755, 919, 1528, 1549, 1829
BssECI CCNNGG 4 cut(s) 775, 776, 803, 1834
BssNAI GTATAC 1 cut(s) 708
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 803
Bst1107I GTATAC 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 5 cut(s) 444, 1230, 1295, 1809, 1835
Bst4CI ACNGT 2 cut(s) 926, 1736
Bst6I CTCTTC 5 cut(s) 141, 342, 663, 987, 1836
BstAPI GCANNNNNTGC 1 cut(s) 1655
BstBI TTCGAA 1 cut(s) 614
BstC8I GCNNGC 8 cut(s) 109, 172, 313, 396, 1578, 1600, 1729, 2003
BstDEI CTNAG 5 cut(s) 375, 1051, 1253, 1289, 1856
BstFNI CGCG 2 cut(s) 73, 2001
BstHHI GCGC 1 cut(s) 1560
BstMAI GTCTC 2 cut(s) 563, 941
BstNI CCWGG 5 cut(s) 444, 1230, 1295, 1809, 1835
BstNSI RCATGY 1 cut(s) 1186
BstSCI CCNGG 8 cut(s) 442, 774, 775, 834, 1228, 1293, 1807, 1833
BstSFI CTRYAG 4 cut(s) 138, 330, 856, 1574
BstUI CGCG 2 cut(s) 73, 2001
BstX2I RGATCY 2 cut(s) 1466, 1548
BstXI CCANNNNNNTGG 1 cut(s) 1356
BstYI RGATCY 2 cut(s) 1466, 1548
BstZ17I GTATAC 1 cut(s) 708
BsuI GTATCC 2 cut(s) 651, 1841
BsuRI GGCC 3 cut(s) 737, 1503, 1580
BtgZI GCGATG 2 cut(s) 126, 1365
BtsI GCAGTG 3 cut(s) 13, 1056, 2042
BtsIMutI CAGTG 4 cut(s) 13, 33, 1056, 2042
BveI ACCTGC 3 cut(s) 469, 863, 1581
Cac8I GCNNGC 8 cut(s) 109, 172, 313, 396, 1578, 1600, 1729, 2003
CaiI CAGNNNCTG 3 cut(s) 1025, 1058, 1664
CciI TCATGA 2 cut(s) 118, 745
CfoI GCGC 1 cut(s) 1560
Cfr13I GGNCC 7 cut(s) 735, 852, 1157, 1579, 1979, 2020, 2057
Cfr9I CCCGGG 1 cut(s) 775
CseI GACGC 1 cut(s) 79
CsiI ACCWGGT 1 cut(s) 442
Csp6I GTAC 3 cut(s) 922, 927, 1619
CviQI GTAC 3 cut(s) 922, 927, 1619
DdeI CTNAG 5 cut(s) 375, 1051, 1253, 1289, 1856
DriI GACNNNNNGTC 2 cut(s) 759, 1078
Eam1104I CTCTTC 5 cut(s) 141, 342, 663, 987, 1836
Eam1105I GACNNNNNGTC 2 cut(s) 759, 1078
EarI CTCTTC 5 cut(s) 141, 342, 663, 987, 1836
EciI GGCGGA 1 cut(s) 1128
Eco130I CCWWGG 1 cut(s) 803
Eco24I GRGCYC 1 cut(s) 1805
Eco47I GGWCC 5 cut(s) 852, 1157, 1979, 2020, 2057
Eco88I CYCGRG 1 cut(s) 775
EcoO109I RGGNCCY 3 cut(s) 735, 852, 1157
EcoRII CCWGG 5 cut(s) 442, 1228, 1293, 1807, 1833
EcoT14I CCWWGG 1 cut(s) 803
EcoT22I ATGCAT 1 cut(s) 1651
EcoT38I GRGCYC 1 cut(s) 1805
ErhI CCWWGG 1 cut(s) 803
Esp3I CGTCTC 1 cut(s) 941
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 3 cut(s) 82, 865, 1569
FauI CCCGC 3 cut(s) 1098, 1994, 2080
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 707
FriOI GRGCYC 1 cut(s) 1805
FspBI CTAG 4 cut(s) 101, 1260, 1353, 1653
GlaI GCGC 1 cut(s) 1559
GsaI CCCAGC 1 cut(s) 1590
GsuI CTGGAG 1 cut(s) 1316
HaeIII GGCC 3 cut(s) 737, 1503, 1580
HapII CCGG 4 cut(s) 662, 776, 836, 1341
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 1560
Hin6I GCGC 1 cut(s) 1558
HinP1I GCGC 1 cut(s) 1558
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 9 cut(s) 22, 226, 1120, 1130, 1147, 1402, 1702, 1878, 2013
HpaII CCGG 4 cut(s) 662, 776, 836, 1341
HphI GGTGA 4 cut(s) 458, 902, 1946, 2033
Hpy166II GTNNAC 3 cut(s) 708, 772, 1438
Hpy8I GTNNAC 3 cut(s) 708, 772, 1438
Hpy99I CGWCG 1 cut(s) 1311
HpyCH4III ACNGT 2 cut(s) 926, 1736
HpyCH4IV ACGT 2 cut(s) 264, 1947
HpyF3I CTNAG 5 cut(s) 375, 1051, 1253, 1289, 1856
HpySE526I ACGT 2 cut(s) 264, 1947
HspAI GCGC 1 cut(s) 1558
Kpn2I TCCGGA 1 cut(s) 661
Ksp22I TGATCA 1 cut(s) 115
LguI GCTCTTC 3 cut(s) 342, 987, 1836
LmnI GCTCC 6 cut(s) 49, 553, 1893, 2073, 2083, 2104
MabI ACCWGGT 1 cut(s) 442
MaeI CTAG 4 cut(s) 101, 1260, 1353, 1653
MaeII ACGT 2 cut(s) 264, 1947
MaeIII GTNAC 3 cut(s) 446, 1530, 2039
MflI RGATCY 2 cut(s) 1466, 1548
MhlI GDGCHC 2 cut(s) 731, 1805
MluCI AATT 9 cut(s) 271, 1083, 1415, 1482, 1493, 1672, 1738, 1817, 2006
MlyI GAGTC 3 cut(s) 220, 1141, 1711
MmeI TCCRAC 1 cut(s) 1565
Mph1103I ATGCAT 1 cut(s) 1651
MroI TCCGGA 1 cut(s) 661
MroXI GAANNNNTTC 2 cut(s) 996, 1424
MseI TTAA 6 cut(s) 78, 303, 564, 1497, 1671, 2119
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 822, 1661
MspI CCGG 4 cut(s) 662, 776, 836, 1341
MspR9I CCNGG 8 cut(s) 444, 776, 777, 836, 1230, 1295, 1809, 1835
MvaI CCWGG 5 cut(s) 444, 1230, 1295, 1809, 1835
MvnI CGCG 2 cut(s) 73, 2001
NciI CCSGG 3 cut(s) 776, 777, 836
NlaIV GGNNCC 4 cut(s) 13, 853, 1345, 1550
NmuCI GTSAC 2 cut(s) 446, 2039
NsiI ATGCAT 1 cut(s) 1651
NspI RCATGY 1 cut(s) 1186
NspV TTCGAA 1 cut(s) 614
PagI TCATGA 2 cut(s) 118, 745
PaqCI CACCTGC 1 cut(s) 469
PciI ACATGT 1 cut(s) 1182
PciSI GCTCTTC 3 cut(s) 342, 987, 1836
PdmI GAANNNNTTC 2 cut(s) 996, 1424
PfeI GAWTC 6 cut(s) 22, 1120, 1130, 1402, 1878, 2013
PflMI CCANNNNNTGG 1 cut(s) 1931
PleI GAGTC 3 cut(s) 220, 1141, 1710
PpsI GAGTC 3 cut(s) 220, 1141, 1710
PpuMI RGGWCCY 2 cut(s) 852, 1157
PscI ACATGT 1 cut(s) 1182
PshBI ATTAAT 1 cut(s) 564
Psp5II RGGWCCY 2 cut(s) 852, 1157
Psp6I CCWGG 5 cut(s) 442, 1228, 1293, 1807, 1833
PspFI CCCAGC 1 cut(s) 1586
PspGI CCWGG 5 cut(s) 442, 1228, 1293, 1807, 1833
PspN4I GGNNCC 4 cut(s) 13, 853, 1345, 1550
PspPI GGNCC 7 cut(s) 735, 852, 1157, 1579, 1979, 2020, 2057
PspPPI RGGWCCY 2 cut(s) 852, 1157
PsrI GAACNNNNNNTAC 2 cut(s) 1941, 1973
PstI CTGCAG 2 cut(s) 860, 1578
PstNI CAGNNNCTG 3 cut(s) 1025, 1058, 1664
PsuI RGATCY 2 cut(s) 1466, 1548
PvuII CAGCTG 2 cut(s) 822, 1661
RsaI GTAC 3 cut(s) 923, 928, 1620
RsaNI GTAC 3 cut(s) 922, 927, 1619
RseI CAYNNNNRTG 1 cut(s) 263
SapI GCTCTTC 3 cut(s) 342, 987, 1836
SaqAI TTAA 6 cut(s) 78, 303, 564, 1497, 1671, 2119
Sau96I GGNCC 7 cut(s) 735, 852, 1157, 1579, 1979, 2020, 2057
SbfI CCTGCAGG 1 cut(s) 1578
SchI GAGTC 3 cut(s) 220, 1141, 1711
ScrFI CCNGG 8 cut(s) 444, 776, 777, 836, 1230, 1295, 1809, 1835
SdaI CCTGCAGG 1 cut(s) 1578
SduI GDGCHC 2 cut(s) 731, 1805
SexAI ACCWGGT 1 cut(s) 442
SfcI CTRYAG 4 cut(s) 138, 330, 856, 1574
SfuI TTCGAA 1 cut(s) 614
SinI GGWCC 5 cut(s) 852, 1157, 1979, 2020, 2057
SmaI CCCGGG 1 cut(s) 777
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 3 cut(s) 512, 730, 1983
SmoI CTYRAG 3 cut(s) 512, 730, 1983
Sse8387I CCTGCAGG 1 cut(s) 1578
Sse9I AATT 9 cut(s) 271, 1083, 1415, 1482, 1493, 1672, 1738, 1817, 2006
SsiI CCGC 9 cut(s) 73, 105, 243, 315, 793, 1091, 1139, 2001, 2073
SspMI CTAG 4 cut(s) 101, 1260, 1353, 1653
StyD4I CCNGG 8 cut(s) 442, 774, 775, 834, 1228, 1293, 1807, 1833
StyI CCWWGG 1 cut(s) 803
TaaI ACNGT 2 cut(s) 926, 1736
TaiI ACGT 2 cut(s) 267, 1950
TasI AATT 9 cut(s) 271, 1083, 1415, 1482, 1493, 1672, 1738, 1817, 2006
TauI GCSGC 3 cut(s) 107, 245, 796
TfiI GAWTC 6 cut(s) 22, 1120, 1130, 1402, 1878, 2013
Tru1I TTAA 6 cut(s) 78, 303, 564, 1497, 1671, 2119
Tru9I TTAA 6 cut(s) 78, 303, 564, 1497, 1671, 2119
TscAI CASTG 4 cut(s) 13, 40, 1063, 2042
TseFI GTSAC 2 cut(s) 446, 2039
Tsp45I GTSAC 2 cut(s) 446, 2039
TspDTI ATGAA 7 cut(s) 135, 275, 329, 549, 1583, 1702, 1902
TspGWI ACGGA 3 cut(s) 704, 753, 2067
TspMI CCCGGG 1 cut(s) 775
TspRI CASTG 4 cut(s) 13, 40, 1063, 2042
Van91I CCANNNNNTGG 1 cut(s) 1931
VpaK11BI GGWCC 5 cut(s) 852, 1157, 1979, 2020, 2057
VspI ATTAAT 1 cut(s) 564
XceI RCATGY 1 cut(s) 1186
XmaI CCCGGG 1 cut(s) 775
XmiI GTMKAC 1 cut(s) 707
XmnI GAANNNNTTC 2 cut(s) 996, 1424
XspI CTAG 4 cut(s) 101, 1260, 1353, 1653
Zsp2I ATGCAT 1 cut(s) 1651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.