zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G58620 |
| fragaria_vesca | FvH4_3g38750 FvH4_3g38750 FvH4_3g38750 |
| malus_domestica | MD03G1068400.v1.1 MD11G1072800.v1.1 |
| prunus_persica | Prupe.6G056300_v2.0.a1 |
| pyrus_communis | pycom03g05490 pycom11g06050 |
| rosa_chinensis | RchiOBHm_Chr5g0069901 |
| rosa_laevigata | RLG00000036106 |
| rosa_multiflora | Rmu_ssc0000133.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00011160 |
| rosa_rugosa | Rorug05G0400600 |
| rosa_samantha | Rh5AG457700 Rh5BG476500 Rh5CG500300 Rh5DG488400 |
| rosa_wichuraiana | Rw5G042740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 469 |
| Acc36I | ACCTGC | 2 cut(s) | 469, 1221 |
| AccI | GTMKAC | 1 cut(s) | 704 |
| AccII | CGCG | 1 cut(s) | 294 |
| AciI | CCGC | 9 cut(s) | 9, 104, 107, 315, 790, 922, 1549, 1693, 1749 |
| AclWI | GGATC | 5 cut(s) | 57, 791, 1081, 1460, 1465 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcuI | CTGAAG | 1 cut(s) | 1356 |
| AfaI | GTAC | 3 cut(s) | 768, 920, 2057 |
| AfeI | AGCGCT | 1 cut(s) | 1313 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1169, 1288, 1343, 1613, 1628, 1939, 2041 |
| AflIII | ACRYGT | 2 cut(s) | 287, 1176 |
| AjnI | CCWGG | 7 cut(s) | 772, 1222, 1287, 1667, 1824, 1948, 1963 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 482, 514, 1138, 1170, 1437, 1469 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 13, 45, 1875, 1907 |
| Alw26I | GTCTC | 3 cut(s) | 441, 938, 1954 |
| AlwI | GGATC | 5 cut(s) | 57, 791, 1081, 1460, 1465 |
| Aor51HI | AGCGCT | 1 cut(s) | 1313 |
| AoxI | GGCC | 3 cut(s) | 108, 327, 1430 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 993 |
| AspLEI | GCGC | 4 cut(s) | 1204, 1305, 1314, 1716 |
| AspS9I | GGNCC | 4 cut(s) | 327, 1431, 1952, 1967 |
| AsuHPI | GGTGA | 5 cut(s) | 181, 587, 899, 1737, 1997 |
| AvaII | GGWCC | 2 cut(s) | 1952, 1967 |
| BaeGI | GKGCMC | 1 cut(s) | 761 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1804, 1837 |
| BanII | GRGCYC | 1 cut(s) | 1796 |
| BauI | CACGAG | 1 cut(s) | 603 |
| BbsI | GAAGAC | 1 cut(s) | 1989 |
| BbvCI | CCTCAGC | 2 cut(s) | 375, 1847 |
| BccI | CCATC | 6 cut(s) | 116, 143, 202, 550, 611, 2068 |
| BceAI | ACGGC | 1 cut(s) | 348 |
| BciT130I | CCWGG | 7 cut(s) | 774, 1224, 1289, 1669, 1826, 1950, 1965 |
| BciVI | GTATCC | 4 cut(s) | 1498, 1550, 1832, 1862 |
| BcoDI | GTCTC | 3 cut(s) | 441, 938, 1954 |
| BfaI | CTAG | 5 cut(s) | 561, 729, 1254, 1365, 1811 |
| BfmI | CTRYAG | 3 cut(s) | 369, 466, 1653 |
| BfoI | RGCGCY | 1 cut(s) | 1315 |
| BfuAI | ACCTGC | 2 cut(s) | 469, 1221 |
| BfuI | GTATCC | 4 cut(s) | 1498, 1550, 1832, 1862 |
| Bme1390I | CCNGG | 7 cut(s) | 774, 1224, 1289, 1669, 1826, 1950, 1965 |
| Bme18I | GGWCC | 2 cut(s) | 1952, 1967 |
| BmgT120I | GGNCC | 4 cut(s) | 327, 1431, 1952, 1967 |
| BmiI | GGNNCC | 2 cut(s) | 199, 1697 |
| BmrFI | CCNGG | 7 cut(s) | 774, 1224, 1289, 1669, 1826, 1950, 1965 |
| BmrI | ACTGGG | 3 cut(s) | 910, 1513, 1825 |
| BmsI | GCATC | 9 cut(s) | 400, 856, 941, 1438, 1523, 1536, 1627, 1649, 1933 |
| BmuI | ACTGGG | 3 cut(s) | 910, 1513, 1825 |
| BpiI | GAAGAC | 1 cut(s) | 1989 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| Bpu10I | CCTNAGC | 3 cut(s) | 375, 1283, 1847 |
| BpuEI | CTTGAG | 1 cut(s) | 497 |
| BsaI | GGTCTC | 1 cut(s) | 1954 |
| BsaJI | CCNNGG | 7 cut(s) | 45, 330, 772, 773, 800, 1222, 1825 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2039, 2069 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1169, 1288, 1343, 1613, 1628, 1939, 2041 |
| Bse1I | ACTGG | 8 cut(s) | 414, 916, 952, 1153, 1332, 1519, 1540, 1820 |
| Bse3DI | GCAATG | 1 cut(s) | 1479 |
| BseBI | CCWGG | 7 cut(s) | 774, 1224, 1289, 1669, 1826, 1950, 1965 |
| BseDI | CCNNGG | 7 cut(s) | 45, 330, 772, 773, 800, 1222, 1825 |
| BseGI | GGATG | 7 cut(s) | 622, 871, 946, 956, 1340, 1514, 1948 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1169, 1288, 1343, 1613, 1628, 1939, 2041 |
| BseMI | GCAATG | 1 cut(s) | 1479 |
| BseMII | CTCAG | 5 cut(s) | 366, 540, 1496, 1599, 1838 |
| BseNI | ACTGG | 8 cut(s) | 414, 916, 952, 1153, 1332, 1519, 1540, 1820 |
| BseRI | GAGGAG | 3 cut(s) | 233, 591, 1437 |
| BseSI | GKGCMC | 1 cut(s) | 761 |
| BseX3I | CGGCCG | 1 cut(s) | 108 |
| BsgI | GTGCAG | 2 cut(s) | 25, 1668 |
| Bsh1236I | CGCG | 1 cut(s) | 294 |
| Bsh1285I | CGRYCG | 1 cut(s) | 111 |
| BshFI | GGCC | 3 cut(s) | 110, 329, 1432 |
| BsiEI | CGRYCG | 1 cut(s) | 111 |
| BsiSI | CCGG | 1 cut(s) | 1344 |
| BslFI | GGGAC | 4 cut(s) | 634, 862, 984, 1320 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1169, 1288, 1343, 1613, 1628, 1939, 2041 |
| BsmAI | GTCTC | 3 cut(s) | 441, 938, 1954 |
| BsmFI | GGGAC | 4 cut(s) | 634, 862, 984, 1320 |
| BsnI | GGCC | 3 cut(s) | 110, 329, 1432 |
| Bso31I | GGTCTC | 1 cut(s) | 1954 |
| Bsp1286I | GDGCHC | 2 cut(s) | 761, 1796 |
| Bsp1407I | TGTACA | 1 cut(s) | 766 |
| Bsp19I | CCATGG | 1 cut(s) | 45 |
| BspACI | CCGC | 9 cut(s) | 9, 104, 107, 315, 790, 922, 1549, 1693, 1749 |
| BspANI | GGCC | 3 cut(s) | 110, 329, 1432 |
| BspCNI | CTCAG | 5 cut(s) | 367, 541, 1495, 1598, 1839 |
| BspFNI | CGCG | 1 cut(s) | 294 |
| BspHI | TCATGA | 2 cut(s) | 52, 154 |
| BspLI | GGNNCC | 2 cut(s) | 199, 1697 |
| BspMAI | CTGCAG | 2 cut(s) | 373, 1657 |
| BspMI | ACCTGC | 2 cut(s) | 469, 1221 |
| BspPI | GGATC | 5 cut(s) | 57, 791, 1081, 1460, 1465 |
| BspQI | GCTCTTC | 2 cut(s) | 342, 984 |
| BspTNI | GGTCTC | 1 cut(s) | 1954 |
| BsrDI | GCAATG | 1 cut(s) | 1479 |
| BsrGI | TGTACA | 1 cut(s) | 766 |
| BsrI | ACTGG | 8 cut(s) | 414, 916, 952, 1153, 1332, 1519, 1540, 1820 |
| BssECI | CCNNGG | 7 cut(s) | 45, 330, 772, 773, 800, 1222, 1825 |
| BssNAI | GTATAC | 1 cut(s) | 705 |
| BssSI | CACGAG | 1 cut(s) | 603 |
| BssT1I | CCWWGG | 2 cut(s) | 45, 800 |
| Bst1107I | GTATAC | 1 cut(s) | 705 |
| Bst2BI | CACGAG | 1 cut(s) | 603 |
| Bst2UI | CCWGG | 7 cut(s) | 774, 1224, 1289, 1669, 1826, 1950, 1965 |
| Bst4CI | ACNGT | 3 cut(s) | 344, 470, 1900 |
| Bst6I | CTCTTC | 2 cut(s) | 342, 984 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1646 |
| BstAUI | TGTACA | 1 cut(s) | 766 |
| BstC8I | GCNNGC | 4 cut(s) | 313, 396, 857, 1307 |
| BstDEI | CTNAG | 8 cut(s) | 375, 549, 1247, 1283, 1482, 1585, 1847, 2059 |
| BstDSI | CCRYGG | 2 cut(s) | 45, 330 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1937 |
| BstF5I | GGATG | 7 cut(s) | 622, 871, 946, 956, 1340, 1514, 1948 |
| BstFNI | CGCG | 1 cut(s) | 294 |
| BstH2I | RGCGCY | 1 cut(s) | 1315 |
| BstHHI | GCGC | 4 cut(s) | 1204, 1305, 1314, 1716 |
| BstMAI | GTCTC | 3 cut(s) | 441, 938, 1954 |
| BstMCI | CGRYCG | 1 cut(s) | 111 |
| BstNI | CCWGG | 7 cut(s) | 774, 1224, 1289, 1669, 1826, 1950, 1965 |
| BstNSI | RCATGY | 2 cut(s) | 1180, 1567 |
| BstSCI | CCNGG | 7 cut(s) | 772, 1222, 1287, 1667, 1824, 1948, 1963 |
| BstSFI | CTRYAG | 3 cut(s) | 369, 466, 1653 |
| BstSLI | GKGCMC | 1 cut(s) | 761 |
| BstUI | CGCG | 1 cut(s) | 294 |
| BstV2I | GAAGAC | 1 cut(s) | 1989 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 208, 1733 |
| BstZ17I | GTATAC | 1 cut(s) | 705 |
| BstZI | CGGCCG | 1 cut(s) | 108 |
| BsuI | GTATCC | 4 cut(s) | 1498, 1550, 1832, 1862 |
| BsuRI | GGCC | 3 cut(s) | 110, 329, 1432 |
| BtgI | CCRYGG | 2 cut(s) | 45, 330 |
| BtsCI | GGATG | 7 cut(s) | 622, 871, 946, 956, 1340, 1514, 1948 |
| BtsI | GCAGTG | 2 cut(s) | 1723, 2006 |
| BtsIMutI | CAGTG | 4 cut(s) | 33, 340, 1723, 2006 |
| BveI | ACCTGC | 2 cut(s) | 469, 1221 |
| Cac8I | GCNNGC | 4 cut(s) | 313, 396, 857, 1307 |
| CciI | TCATGA | 2 cut(s) | 52, 154 |
| CfoI | GCGC | 4 cut(s) | 1204, 1305, 1314, 1716 |
| Cfr13I | GGNCC | 4 cut(s) | 327, 1431, 1952, 1967 |
| Csp6I | GTAC | 3 cut(s) | 767, 919, 2056 |
| CviQI | GTAC | 3 cut(s) | 767, 919, 2056 |
| DdeI | CTNAG | 8 cut(s) | 375, 549, 1247, 1283, 1482, 1585, 1847, 2059 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| EagI | CGGCCG | 1 cut(s) | 108 |
| Eam1104I | CTCTTC | 2 cut(s) | 342, 984 |
| EarI | CTCTTC | 2 cut(s) | 342, 984 |
| EclXI | CGGCCG | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 2 cut(s) | 45, 800 |
| Eco24I | GRGCYC | 1 cut(s) | 1796 |
| Eco31I | GGTCTC | 1 cut(s) | 1954 |
| Eco47I | GGWCC | 2 cut(s) | 1952, 1967 |
| Eco47III | AGCGCT | 1 cut(s) | 1313 |
| Eco52I | CGGCCG | 1 cut(s) | 108 |
| Eco57I | CTGAAG | 1 cut(s) | 1356 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1937 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1952 |
| EcoRII | CCWGG | 7 cut(s) | 772, 1222, 1287, 1667, 1824, 1948, 1963 |
| EcoT14I | CCWWGG | 2 cut(s) | 45, 800 |
| EcoT22I | ATGCAT | 1 cut(s) | 1642 |
| EcoT38I | GRGCYC | 1 cut(s) | 1796 |
| ErhI | CCWWGG | 2 cut(s) | 45, 800 |
| FaqI | GGGAC | 4 cut(s) | 634, 862, 984, 1320 |
| FauI | CCCGC | 1 cut(s) | 1756 |
| FblI | GTMKAC | 1 cut(s) | 704 |
| FokI | GGATG | 7 cut(s) | 629, 878, 953, 963, 1327, 1501, 1955 |
| FriOI | GRGCYC | 1 cut(s) | 1796 |
| FspBI | CTAG | 5 cut(s) | 561, 729, 1254, 1365, 1811 |
| GlaI | GCGC | 4 cut(s) | 1203, 1304, 1313, 1715 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeII | RGCGCY | 1 cut(s) | 1315 |
| HaeIII | GGCC | 3 cut(s) | 110, 329, 1432 |
| HapII | CCGG | 1 cut(s) | 1344 |
| HhaI | GCGC | 4 cut(s) | 1204, 1305, 1314, 1716 |
| Hin6I | GCGC | 4 cut(s) | 1202, 1303, 1312, 1714 |
| HinP1I | GCGC | 4 cut(s) | 1202, 1303, 1312, 1714 |
| HindIII | AAGCTT | 2 cut(s) | 495, 537 |
| HinfI | GANTC | 7 cut(s) | 38, 1081, 1114, 1141, 1393, 1754, 2021 |
| HpaII | CCGG | 1 cut(s) | 1344 |
| HphI | GGTGA | 5 cut(s) | 181, 587, 899, 1737, 1997 |
| Hpy166II | GTNNAC | 5 cut(s) | 705, 769, 1085, 1242, 1927 |
| Hpy188I | TCNGA | 5 cut(s) | 322, 550, 842, 1574, 2026 |
| Hpy8I | GTNNAC | 5 cut(s) | 705, 769, 1085, 1242, 1927 |
| HpyCH4III | ACNGT | 3 cut(s) | 344, 470, 1900 |
| HpyCH4IV | ACGT | 1 cut(s) | 287 |
| HpyF3I | CTNAG | 8 cut(s) | 375, 549, 1247, 1283, 1482, 1585, 1847, 2059 |
| HpySE526I | ACGT | 1 cut(s) | 287 |
| HspAI | GCGC | 4 cut(s) | 1202, 1303, 1312, 1714 |
| LguI | GCTCTTC | 2 cut(s) | 342, 984 |
| LmnI | GCTCC | 5 cut(s) | 203, 1224, 1695, 2047, 2068 |
| LweI | GCATC | 9 cut(s) | 400, 856, 941, 1438, 1523, 1536, 1627, 1649, 1933 |
| MaeI | CTAG | 5 cut(s) | 561, 729, 1254, 1365, 1811 |
| MaeII | ACGT | 1 cut(s) | 287 |
| MaeIII | GTNAC | 2 cut(s) | 1485, 2003 |
| MfeI | CAATTG | 1 cut(s) | 1461 |
| MhlI | GDGCHC | 2 cut(s) | 761, 1796 |
| MluCI | AATT | 7 cut(s) | 271, 481, 520, 1406, 1461, 1729, 1786 |
| MlyI | GAGTC | 3 cut(s) | 32, 1090, 1135 |
| MmeI | TCCRAC | 4 cut(s) | 1169, 1556, 1800, 1919 |
| Mph1103I | ATGCAT | 1 cut(s) | 1642 |
| MroXI | GAANNNNTTC | 1 cut(s) | 993 |
| MseI | TTAA | 5 cut(s) | 303, 429, 1095, 1938, 2083 |
| MslI | CAYNNNNRTG | 3 cut(s) | 263, 1562, 1731 |
| MspA1I | CMGCKG | 6 cut(s) | 9, 374, 1652, 1676, 1693, 1751 |
| MspI | CCGG | 1 cut(s) | 1344 |
| MspR9I | CCNGG | 7 cut(s) | 774, 1224, 1289, 1669, 1826, 1950, 1965 |
| MunI | CAATTG | 1 cut(s) | 1461 |
| MvaI | CCWGG | 7 cut(s) | 774, 1224, 1289, 1669, 1826, 1950, 1965 |
| MvnI | CGCG | 1 cut(s) | 294 |
| NcoI | CCATGG | 1 cut(s) | 45 |
| NlaIV | GGNNCC | 2 cut(s) | 199, 1697 |
| NmuCI | GTSAC | 1 cut(s) | 2003 |
| NsiI | ATGCAT | 1 cut(s) | 1642 |
| NspI | RCATGY | 2 cut(s) | 1180, 1567 |
| PagI | TCATGA | 2 cut(s) | 52, 154 |
| PaqCI | CACCTGC | 1 cut(s) | 469 |
| PasI | CCCWGGG | 1 cut(s) | 773 |
| PciI | ACATGT | 1 cut(s) | 1176 |
| PciSI | GCTCTTC | 2 cut(s) | 342, 984 |
| PdmI | GAANNNNTTC | 1 cut(s) | 993 |
| PfeI | GAWTC | 4 cut(s) | 1114, 1393, 1754, 2021 |
| PleI | GAGTC | 3 cut(s) | 32, 1089, 1135 |
| PpsI | GAGTC | 3 cut(s) | 32, 1089, 1135 |
| PpuMI | RGGWCCY | 1 cut(s) | 1952 |
| PscI | ACATGT | 1 cut(s) | 1176 |
| Psp5II | RGGWCCY | 1 cut(s) | 1952 |
| Psp6I | CCWGG | 7 cut(s) | 772, 1222, 1287, 1667, 1824, 1948, 1963 |
| PspGI | CCWGG | 7 cut(s) | 772, 1222, 1287, 1667, 1824, 1948, 1963 |
| PspN4I | GGNNCC | 2 cut(s) | 199, 1697 |
| PspPI | GGNCC | 4 cut(s) | 327, 1431, 1952, 1967 |
| PspPPI | RGGWCCY | 1 cut(s) | 1952 |
| PstI | CTGCAG | 2 cut(s) | 373, 1657 |
| PvuII | CAGCTG | 3 cut(s) | 374, 1652, 1676 |
| RsaI | GTAC | 3 cut(s) | 768, 920, 2057 |
| RsaNI | GTAC | 3 cut(s) | 767, 919, 2056 |
| RseI | CAYNNNNRTG | 3 cut(s) | 263, 1562, 1731 |
| SapI | GCTCTTC | 2 cut(s) | 342, 984 |
| SaqAI | TTAA | 5 cut(s) | 303, 429, 1095, 1938, 2083 |
| Sau96I | GGNCC | 4 cut(s) | 327, 1431, 1952, 1967 |
| SchI | GAGTC | 3 cut(s) | 32, 1090, 1135 |
| ScrFI | CCNGG | 7 cut(s) | 774, 1224, 1289, 1669, 1826, 1950, 1965 |
| SduI | GDGCHC | 2 cut(s) | 761, 1796 |
| SfaNI | GCATC | 9 cut(s) | 400, 856, 941, 1438, 1523, 1536, 1627, 1649, 1933 |
| SfcI | CTRYAG | 3 cut(s) | 369, 466, 1653 |
| SinI | GGWCC | 2 cut(s) | 1952, 1967 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 263, 1562, 1731 |
| SmlI | CTYRAG | 1 cut(s) | 512 |
| SmoI | CTYRAG | 1 cut(s) | 512 |
| Sse9I | AATT | 7 cut(s) | 271, 481, 520, 1406, 1461, 1729, 1786 |
| SsiI | CCGC | 9 cut(s) | 9, 104, 107, 315, 790, 922, 1549, 1693, 1749 |
| SspI | AATATT | 1 cut(s) | 1198 |
| SspMI | CTAG | 5 cut(s) | 561, 729, 1254, 1365, 1811 |
| StyD4I | CCNGG | 7 cut(s) | 772, 1222, 1287, 1667, 1824, 1948, 1963 |
| StyI | CCWWGG | 2 cut(s) | 45, 800 |
| TaaI | ACNGT | 3 cut(s) | 344, 470, 1900 |
| TaiI | ACGT | 1 cut(s) | 290 |
| TaqI | TCGA | 8 cut(s) | 41, 86, 216, 485, 1396, 1443, 1958, 2010 |
| TasI | AATT | 7 cut(s) | 271, 481, 520, 1406, 1461, 1729, 1786 |
| TatI | WGTACW | 2 cut(s) | 766, 2055 |
| TauI | GCSGC | 4 cut(s) | 107, 110, 793, 1552 |
| TfiI | GAWTC | 4 cut(s) | 1114, 1393, 1754, 2021 |
| Tru1I | TTAA | 5 cut(s) | 303, 429, 1095, 1938, 2083 |
| Tru9I | TTAA | 5 cut(s) | 303, 429, 1095, 1938, 2083 |
| TscAI | CASTG | 4 cut(s) | 40, 347, 1723, 2006 |
| TseFI | GTSAC | 1 cut(s) | 2003 |
| Tsp45I | GTSAC | 1 cut(s) | 2003 |
| TspDTI | ATGAA | 6 cut(s) | 275, 549, 1181, 1574, 1590, 1696 |
| TspGWI | ACGGA | 3 cut(s) | 638, 1001, 1092 |
| TspRI | CASTG | 4 cut(s) | 40, 347, 1723, 2006 |
| VpaK11BI | GGWCC | 2 cut(s) | 1952, 1967 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1937 |
| XceI | RCATGY | 2 cut(s) | 1180, 1567 |
| XmiI | GTMKAC | 1 cut(s) | 704 |
| XmnI | GAANNNNTTC | 1 cut(s) | 993 |
| XspI | CTAG | 5 cut(s) | 561, 729, 1254, 1365, 1811 |
| Zsp2I | ATGCAT | 1 cut(s) | 1642 |